Wall clock time and date at job start Mon Mar 30 2020 00:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30643 * 125.41989 * 2 1 4 4 C 1.33646 * 109.01019 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.28099 * 180.02562 * 4 3 2 6 6 C 1.36435 * 107.44327 * 359.97438 * 4 3 2 7 7 C 1.46545 * 126.65318 * 180.02562 * 6 4 3 8 8 O 1.21617 * 119.99706 * 355.24541 * 7 6 4 9 9 O 1.34884 * 120.00083 * 175.25023 * 7 6 4 10 10 C 1.45206 * 116.99853 * 185.19589 * 9 7 6 11 11 C 1.52997 * 109.46969 * 184.20656 * 10 9 7 12 12 C 1.50706 * 115.54855 * 64.76808 * 11 10 9 13 13 H 1.07997 * 119.99912 * 266.68050 * 12 11 10 14 14 C 1.37876 * 120.00056 * 86.68176 * 12 11 10 15 15 N 1.31506 * 120.00184 * 178.71845 * 14 12 11 16 16 Si 1.86805 * 119.99872 * 358.71977 * 14 12 11 17 17 H 1.48504 * 109.47121 * 90.85114 * 16 14 12 18 18 H 1.48495 * 109.46965 * 210.85202 * 16 14 12 19 19 H 1.48500 * 109.47280 * 330.85046 * 16 14 12 20 20 C 1.52999 * 117.49961 * 279.09733 * 11 10 9 21 21 C 1.52998 * 117.49780 * 210.43471 * 11 10 9 22 22 O 1.33656 * 125.41524 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47540 * 89.99887 * 1 2 3 24 24 H 1.09003 * 109.47312 * 210.00629 * 1 2 3 25 25 H 1.09008 * 109.46926 * 330.00338 * 1 2 3 26 26 H 1.09000 * 109.46503 * 89.97215 * 5 4 3 27 27 H 1.08997 * 109.47373 * 209.97811 * 5 4 3 28 28 H 1.09003 * 109.46689 * 329.97899 * 5 4 3 29 29 H 1.08998 * 109.47097 * 304.20879 * 10 9 7 30 30 H 1.09001 * 109.46799 * 64.20425 * 10 9 7 31 31 H 0.97004 * 120.00629 * 179.97438 * 15 14 12 32 32 H 1.08991 * 117.49848 * 0.02562 * 20 11 10 33 33 H 1.08998 * 117.49810 * 145.01922 * 20 11 10 34 34 H 1.09002 * 117.49921 * 214.97525 * 21 11 10 35 35 H 1.08998 * 117.50162 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2641 1.0646 0.0000 4 6 3.5461 0.6871 -0.0006 5 6 4.7448 1.6005 -0.0002 6 6 3.5707 -0.6770 -0.0003 7 6 4.7620 -1.5305 -0.0003 8 8 5.8676 -1.0314 -0.0877 9 8 4.6323 -2.8696 0.0967 10 6 5.8555 -3.6441 0.2074 11 6 5.5168 -5.1361 0.2011 12 6 4.9096 -5.6593 -1.0752 13 1 3.8360 -5.7040 -1.1837 14 6 5.7247 -6.0808 -2.1042 15 7 5.1951 -6.5609 -3.2080 16 14 7.5813 -5.9701 -1.9304 17 1 8.1011 -7.2369 -1.3555 18 1 8.1909 -5.7457 -3.2657 19 1 7.9279 -4.8398 -1.0318 20 6 5.0430 -5.7586 1.5159 21 6 6.4417 -6.0737 0.9796 22 8 2.2815 -1.0893 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 5.0336 1.8204 1.0276 27 1 5.5732 1.1131 -0.5142 28 1 4.4942 2.5288 -0.5137 29 1 6.5076 -3.4159 -0.6356 30 1 6.3630 -3.3906 1.1382 31 1 5.7684 -6.8572 -3.9322 32 1 4.9722 -5.1051 2.3854 33 1 4.2924 -6.5468 1.4579 34 1 6.6106 -7.0693 0.5691 35 1 7.2917 -5.6278 1.4961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755706723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:07 Heat of formation + Delta-G solvation = -36.660486 kcal Electronic energy + Delta-G solvation = -19920.343533 eV Core-core repulsion = 16693.528520 eV Total energy + Delta-G solvation = -3226.815014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.49605 -39.85146 -37.23413 -35.82643 -35.12471 -32.91624 -32.13669 -29.49678 -28.40534 -26.80212 -25.28470 -22.61931 -21.86850 -21.70772 -20.62009 -19.22061 -17.94902 -17.16820 -16.94152 -16.03384 -15.73332 -15.63947 -14.82836 -14.38143 -14.02425 -13.52135 -13.25498 -13.20308 -12.98874 -12.84865 -12.63605 -12.60953 -12.29921 -12.20895 -11.18428 -11.08222 -10.99125 -10.94496 -10.62510 -10.44225 -10.25158 -10.06080 -9.68516 -9.09950 -8.88794 -8.63208 -8.62974 -6.14690 -4.18159 0.69017 2.24201 2.26397 2.94822 3.11134 3.24674 3.35031 3.36846 3.75960 4.36776 4.56441 4.67630 4.96237 5.05458 5.10568 5.12533 5.31966 5.47300 5.51740 5.57365 5.58007 5.78439 5.85027 5.89119 5.91361 6.04913 6.15084 6.22140 6.37659 6.62260 6.75708 6.95751 7.02987 7.45252 7.64849 7.99931 8.46538 8.90357 9.46912 10.97149 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.005372 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.856399 B = 5210.856269 C = 5451.524347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.223 3.777 3 N -0.493 5.493 4 C 0.086 3.914 5 C -0.083 4.083 6 C -0.092 4.092 7 C 0.551 3.449 8 O -0.494 6.494 9 O -0.318 6.318 10 C 0.107 3.893 11 C -0.008 4.008 12 C -0.483 4.483 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.895 5.895 16 Si 0.876 3.124 17 H -0.275 1.275 18 H -0.291 1.291 19 H -0.261 1.261 20 C -0.172 4.172 21 C -0.188 4.188 22 O -0.168 6.168 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 12.655 7.944 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.018 3.982 3 N -0.225 5.225 4 C -0.038 4.038 5 C -0.140 4.140 6 C -0.145 4.145 7 C 0.394 3.606 8 O -0.385 6.385 9 O -0.232 6.232 10 C 0.033 3.967 11 C -0.009 4.009 12 C -0.520 4.520 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.218 1.218 19 H -0.185 1.185 20 C -0.209 4.209 21 C -0.225 4.225 22 O -0.054 6.054 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.890 13.184 7.711 16.037 hybrid contribution 1.362 -0.764 -0.094 1.564 sum -3.528 12.420 7.617 14.991 Atomic orbital electron populations 1.20405 0.80607 1.05586 1.05329 1.26624 0.96867 0.78689 0.96020 1.70361 1.01302 1.29945 1.20847 1.22064 0.93744 0.90684 0.97311 1.20440 0.92254 0.97545 1.03777 1.21755 0.81842 0.93452 1.17457 1.18992 0.85444 0.82374 0.73752 1.90867 1.24814 1.75619 1.47213 1.86718 1.39043 1.16092 1.81339 1.23216 0.82374 0.90840 1.00227 1.19326 1.00391 0.87296 0.93852 1.20220 0.94924 1.41425 0.95464 0.90086 1.24999 0.98647 0.94076 0.94867 1.69879 1.35718 1.41767 1.05778 0.86909 0.86024 0.79351 0.77327 1.20092 1.21751 1.18529 1.22832 0.96924 1.03772 0.97421 1.23010 0.93102 1.01378 1.05040 1.84585 1.15815 1.36581 1.68399 0.88195 0.88628 0.87749 0.89902 0.88426 0.90193 0.90851 0.93130 0.92448 0.90748 0.89057 0.88650 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.00 0.38 -0.09 16 2 C 0.22 2.97 8.32 -12.79 -0.11 2.86 16 3 N -0.49 -7.21 11.25 -7.06 -0.08 -7.29 16 4 C 0.09 1.33 7.16 -82.45 -0.59 0.74 16 5 C -0.08 -1.04 9.92 36.01 0.36 -0.68 16 6 C -0.09 -1.62 7.25 -36.89 -0.27 -1.89 16 7 C 0.55 10.93 7.92 34.08 0.27 11.20 16 8 O -0.49 -9.92 14.49 -19.36 -0.28 -10.20 16 9 O -0.32 -7.02 10.16 -41.95 -0.43 -7.45 16 10 C 0.11 2.36 5.01 37.16 0.19 2.54 16 11 C -0.01 -0.18 1.06 -155.66 -0.16 -0.34 16 12 C -0.48 -13.52 9.36 -34.44 -0.32 -13.85 16 13 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16 16 Si 0.88 21.43 24.88 -169.99 -4.23 17.20 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.26 -6.04 5.74 56.52 0.32 -5.72 16 20 C -0.17 -3.48 9.96 -26.69 -0.27 -3.74 16 21 C -0.19 -3.89 7.62 -26.69 -0.20 -4.09 16 22 O -0.17 -2.82 10.79 4.39 0.05 -2.77 16 23 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.32 6.39 -51.93 -0.33 0.99 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.71 6.47 -51.93 -0.34 1.37 16 30 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 34 H 0.10 2.04 7.29 -51.93 -0.38 1.66 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 304.78 15.07 4.59 4.59 Total: -1.00 -32.57 304.78 -4.91 -37.48 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.48 Total: -0.02 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.83 Total: -5.24 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.69 Total: -33.60 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.66 Total: -20.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.23 Total: 17.20 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.57 -4.91 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755706723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.818 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds