Wall clock time and date at job start Mon Mar 30 2020 00:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34864 * 119.09246 * 2 1 4 4 C 1.41667 * 119.34392 * 180.25368 * 3 2 1 5 5 O 1.22083 * 121.07398 * 179.76657 * 4 3 2 6 6 C 1.47140 * 117.85483 * 359.49946 * 4 3 2 7 7 C 1.47138 * 120.88871 * 180.22966 * 6 4 3 8 8 O 1.21541 * 120.00122 * 359.97438 * 7 6 4 9 9 O 1.34782 * 120.00281 * 179.97438 * 7 6 4 10 10 C 1.45202 * 117.00165 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46819 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47034 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99865 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99866 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00278 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99622 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47463 * 60.00043 * 17 15 13 19 19 H 1.48506 * 109.46662 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47082 * 299.99334 * 17 15 13 21 21 C 1.38068 * 118.22460 * 0.24291 * 6 4 3 22 22 N 1.34315 * 120.36162 * 0.02562 * 21 6 4 23 23 H 0.97004 * 118.79835 * 179.97438 * 22 21 6 24 24 H 1.08994 * 109.46984 * 270.26566 * 1 2 3 25 25 H 1.09005 * 109.47413 * 30.26602 * 1 2 3 26 26 H 1.08999 * 109.47262 * 150.26103 * 1 2 3 27 27 H 1.07998 * 120.32724 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47115 * 299.99847 * 10 9 7 29 29 H 1.09000 * 109.46888 * 59.99895 * 10 9 7 30 30 H 1.09002 * 109.47167 * 299.99900 * 11 10 9 31 31 H 1.09000 * 109.46918 * 59.99949 * 11 10 9 32 32 H 1.09002 * 109.47169 * 299.99898 * 12 11 10 33 33 H 1.09000 * 109.47417 * 60.00254 * 12 11 10 34 34 H 0.97001 * 120.00257 * 180.02562 * 16 15 13 35 35 H 1.08000 * 119.82240 * 179.97438 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5794 1.1847 -0.0055 5 8 4.2049 2.2331 -0.0099 6 6 4.2726 -0.1131 0.0004 7 6 5.7423 -0.1845 0.0003 8 8 6.4004 0.8373 -0.0051 9 8 6.3588 -1.3831 0.0063 10 6 7.8108 -1.3775 0.0052 11 6 8.3263 -2.8180 0.0132 12 6 9.8563 -2.8121 0.0127 13 6 10.3641 -4.2310 0.0199 14 1 9.6654 -5.0546 0.0248 15 6 11.7206 -4.4777 0.0214 16 7 12.5713 -3.4749 0.0159 17 14 12.3500 -6.2365 0.0296 18 1 11.8580 -6.9440 -1.1797 19 1 13.8350 -6.2307 0.0292 20 1 11.8575 -6.9327 1.2452 21 6 3.5072 -1.2622 0.0058 22 7 2.1663 -1.1848 0.0050 23 1 1.6507 -2.0065 0.0085 24 1 -0.3633 0.0048 1.0276 25 1 -0.3634 0.8876 -0.5180 26 1 -0.3634 -0.8923 -0.5098 27 1 1.6133 2.1083 0.0004 28 1 8.1716 -0.8670 -0.8878 29 1 8.1728 -0.8575 0.8922 30 1 7.9656 -3.3281 0.9064 31 1 7.9643 -3.3384 -0.8735 32 1 10.2174 -2.3019 -0.8803 33 1 10.2179 -2.2919 0.8997 34 1 13.5257 -3.6484 0.0165 35 1 3.9893 -2.2287 0.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762899378.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:42 Heat of formation + Delta-G solvation = -136.295554 kcal Electronic energy + Delta-G solvation = -18852.147329 eV Core-core repulsion = 15621.011815 eV Total energy + Delta-G solvation = -3231.135514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10527 -40.95262 -38.95156 -37.53878 -35.90977 -34.41563 -33.63046 -32.56462 -29.52946 -28.61742 -25.64968 -24.92023 -23.43775 -22.50439 -22.14486 -19.79445 -18.99145 -18.48246 -17.64922 -17.49757 -17.23863 -16.96012 -16.47704 -16.30345 -15.49223 -15.47466 -14.64001 -14.54042 -14.08282 -13.93729 -13.86945 -13.82195 -13.63669 -13.40572 -13.03937 -12.77507 -12.51825 -12.39294 -12.04328 -11.83261 -11.46891 -11.39513 -11.25953 -10.55980 -10.53832 -10.50294 -9.33273 -8.20146 -6.32604 -0.33065 0.30151 1.42212 1.46455 1.53525 1.53566 1.57097 1.77613 2.42772 2.65240 3.13658 3.34114 3.61193 3.63953 3.97033 4.00708 4.10517 4.11831 4.39887 4.42940 4.71589 4.77335 4.81505 4.82557 4.90225 5.10256 5.21974 5.24565 5.45215 5.53593 5.63466 5.64629 5.81071 6.06726 6.19188 6.80780 6.84794 7.00331 7.37195 8.92265 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.003087 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.980257 B = 9068.086515 C = 9727.014912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.193 3.807 3 C -0.296 4.296 4 C 0.387 3.613 5 O -0.566 6.566 6 C -0.354 4.354 7 C 0.510 3.490 8 O -0.548 6.548 9 O -0.350 6.350 10 C 0.079 3.921 11 C -0.087 4.087 12 C 0.023 3.977 13 C -0.541 4.541 14 H 0.071 0.929 15 C -0.005 4.005 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.263 1.263 19 H -0.287 1.287 20 H -0.263 1.263 21 C 0.265 3.735 22 N -0.545 5.545 23 H 0.454 0.546 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.161 0.839 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.074 0.926 32 H -0.007 1.007 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.815 -2.152 0.035 32.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 C -0.318 4.318 4 C 0.280 3.720 5 O -0.454 6.454 6 C -0.362 4.362 7 C 0.357 3.643 8 O -0.439 6.439 9 O -0.267 6.267 10 C 0.005 3.995 11 C -0.125 4.125 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.089 0.911 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.213 1.213 20 H -0.188 1.188 21 C 0.128 3.872 22 N -0.151 5.151 23 H 0.297 0.703 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.179 0.821 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.011 0.989 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -32.158 -1.268 0.029 32.183 hybrid contribution 1.425 -0.173 0.005 1.435 sum -30.733 -1.441 0.033 30.767 Atomic orbital electron populations 1.21326 0.83469 1.07021 1.06235 1.20875 0.97066 0.84181 0.89381 1.22093 0.93139 0.99988 1.16607 1.18981 0.90696 0.87209 0.75138 1.90792 1.71751 1.35551 1.47305 1.21425 0.89107 0.97390 1.28327 1.21061 0.89408 0.81250 0.72587 1.90872 1.67800 1.37440 1.47743 1.86434 1.23588 1.32135 1.84526 1.23106 0.75196 0.99969 1.01205 1.21433 0.95927 0.92026 1.03077 1.18960 0.90768 0.96533 0.95188 1.21607 0.92335 0.93163 1.50809 0.91069 1.26086 0.97400 1.02164 0.94614 1.70117 1.02651 1.33478 1.51509 0.85390 0.76772 0.78793 0.79426 1.18795 1.21254 1.18784 1.22854 0.82986 1.00046 0.81277 1.41124 1.05168 1.10560 1.58294 0.70255 0.87085 0.88061 0.87000 0.82128 0.92806 0.92820 0.90739 0.90729 0.98910 0.98908 0.92742 0.76006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.48 10.02 71.24 0.71 1.19 16 2 C 0.19 1.14 6.79 41.20 0.28 1.42 16 3 C -0.30 -5.31 9.57 22.34 0.21 -5.10 16 4 C 0.39 12.43 6.97 25.46 0.18 12.61 16 5 O -0.57 -25.72 16.41 13.57 0.22 -25.50 16 6 C -0.35 -9.83 6.05 -18.64 -0.11 -9.94 16 7 C 0.51 19.46 7.90 70.16 0.55 20.01 16 8 O -0.55 -27.13 15.36 26.19 0.40 -26.73 16 9 O -0.35 -12.05 9.50 -56.93 -0.54 -12.59 16 10 C 0.08 3.19 5.48 71.98 0.39 3.59 16 11 C -0.09 -3.61 5.53 30.59 0.17 -3.44 16 12 C 0.02 1.22 4.97 29.85 0.15 1.37 16 13 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 14 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 15 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 16 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 17 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 C 0.27 3.02 10.81 84.27 0.91 3.93 16 22 N -0.54 -1.29 5.16 -182.34 -0.94 -2.23 16 23 H 0.45 -3.75 8.70 -92.70 -0.81 -4.56 16 24 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.10 -0.34 8.06 -2.38 -0.02 -0.36 16 26 H 0.11 -1.03 8.12 -2.39 -0.02 -1.05 16 27 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.22 1.05 7.62 -2.91 -0.02 1.02 16 Total: -1.00 -98.18 312.81 5.90 -92.28 By element: Atomic # 1 Polarization: -8.93 SS G_CDS: 0.30 Total: -8.63 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.14 Total: -4.57 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.66 Total: -60.18 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: 0.08 Total: -64.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -98.18 5.90 -92.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762899378.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.014 kcal (2) G-P(sol) polarization free energy of solvation -98.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds