Wall clock time and date at job start Mon Mar 30 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47598 * 2 1 4 4 H 1.08998 * 109.47172 * 305.00685 * 3 2 1 5 5 C 1.53001 * 109.47617 * 184.99731 * 3 2 1 6 6 O 1.42902 * 109.46696 * 64.99923 * 3 2 1 7 7 C 1.35686 * 116.99825 * 209.99861 * 6 3 2 8 8 C 1.38874 * 119.61575 * 179.97438 * 7 6 3 9 9 C 1.39670 * 118.93268 * 180.02562 * 8 7 6 10 10 C 1.47976 * 120.89879 * 180.29486 * 9 8 7 11 11 O 1.21462 * 120.00091 * 359.72786 * 10 9 8 12 12 O 1.34693 * 119.99855 * 179.71921 * 10 9 8 13 13 C 1.34821 * 116.99789 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00325 * 0.02562 * 13 12 10 15 15 C 1.38849 * 119.99994 * 180.02562 * 13 12 10 16 16 N 1.31387 * 119.99977 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00042 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47114 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47235 * 119.99967 * 17 15 13 20 20 H 1.48496 * 109.47121 * 239.99828 * 17 15 13 21 21 C 1.40065 * 118.19982 * 0.02562 * 9 8 7 22 22 C 1.37946 * 119.12374 * 359.97438 * 21 9 8 23 23 N 1.31924 * 120.98786 * 359.97438 * 22 21 9 24 24 H 1.08998 * 109.46726 * 59.99477 * 1 2 3 25 25 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47074 * 299.99930 * 1 2 3 27 27 H 1.09000 * 109.47074 * 240.00070 * 2 1 3 28 28 H 1.09002 * 109.47187 * 120.00391 * 2 1 3 29 29 H 1.09000 * 109.46410 * 60.00466 * 5 3 2 30 30 H 1.08998 * 109.47190 * 180.02562 * 5 3 2 31 31 H 1.08994 * 109.47188 * 300.00830 * 5 3 2 32 32 H 1.08001 * 120.53538 * 0.04629 * 8 7 6 33 33 H 0.97002 * 120.00489 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.43537 * 179.97438 * 21 9 8 35 35 H 1.07994 * 119.50848 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4508 3.4208 1.1757 8 6 1.0807 4.0967 2.3310 9 6 0.8663 5.4755 2.2680 10 6 0.4771 6.2399 3.4737 11 8 0.3351 5.6680 4.5358 12 8 0.2805 7.5700 3.3934 13 6 -0.0720 8.2062 4.5287 14 1 -0.1841 7.6494 5.4473 15 6 -0.2908 9.5773 4.5168 16 7 -0.1540 10.2547 3.3995 17 14 -0.7784 10.4589 6.0899 18 1 -0.8632 9.4777 7.2013 19 1 0.2403 11.4889 6.4162 20 1 -2.0994 11.1110 5.9027 21 6 1.0354 6.1158 1.0338 22 6 1.4047 5.3685 -0.0653 23 7 1.5996 4.0673 0.0324 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8532 0.9570 -1.0571 30 1 3.9283 2.4719 -0.1252 31 1 3.9995 0.9051 0.7161 32 1 0.9609 3.5649 3.2634 33 1 -0.3065 11.2127 3.3912 34 1 0.8786 7.1805 0.9439 35 1 1.5364 5.8557 -1.0200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777185635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:59 Heat of formation + Delta-G solvation = -111.577807 kcal Electronic energy + Delta-G solvation = -19410.251174 eV Core-core repulsion = 16180.187502 eV Total energy + Delta-G solvation = -3230.063672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.93650 -40.95116 -39.28535 -37.40491 -35.20803 -34.44577 -33.71077 -31.52734 -30.69721 -28.04206 -26.01483 -24.90784 -24.22405 -22.87353 -21.44849 -20.05691 -19.82383 -18.45206 -17.38142 -17.14081 -16.91518 -16.54609 -16.42691 -16.23193 -15.57983 -15.12861 -14.94461 -14.72737 -14.52160 -14.11896 -13.68845 -13.60576 -13.26586 -13.06131 -12.86764 -12.66889 -12.48613 -12.22583 -12.06453 -12.02005 -11.74969 -11.59396 -11.41534 -11.06223 -10.76228 -10.73472 -9.59034 -8.63796 -6.40449 -0.49520 0.07486 1.33188 1.33855 1.51501 1.71031 1.77134 2.12186 2.58886 2.68616 2.95855 3.24567 3.77601 3.80130 3.93070 3.98538 4.01137 4.20890 4.35080 4.47033 4.56956 4.65147 4.70227 4.80222 4.83717 5.03209 5.05599 5.07962 5.13347 5.17607 5.23510 5.37063 5.39379 5.71883 6.21714 6.47043 6.67524 6.80149 7.58505 8.56164 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.042612 B = 0.003818 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.936908 B = 7331.183904 C = 7639.231889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.087 0.913 5 C -0.165 4.165 6 O -0.307 6.307 7 C 0.322 3.678 8 C -0.155 4.155 9 C -0.030 4.030 10 C 0.427 3.573 11 O -0.573 6.573 12 O -0.219 6.219 13 C -0.422 4.422 14 H 0.085 0.915 15 C 0.003 3.997 16 N -0.888 5.888 17 Si 1.020 2.980 18 H -0.265 1.265 19 H -0.257 1.257 20 H -0.257 1.257 21 C -0.168 4.168 22 C 0.151 3.849 23 N -0.523 5.523 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.284 0.716 34 H 0.149 0.851 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -13.962 -10.895 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C 0.020 3.980 4 H 0.105 0.895 5 C -0.222 4.222 6 O -0.215 6.215 7 C 0.143 3.857 8 C -0.176 4.176 9 C -0.039 4.039 10 C 0.276 3.724 11 O -0.473 6.473 12 O -0.126 6.126 13 C -0.498 4.498 14 H 0.102 0.898 15 C -0.199 4.199 16 N -0.523 5.523 17 Si 0.839 3.161 18 H -0.189 1.189 19 H -0.181 1.181 20 H -0.181 1.181 21 C -0.188 4.188 22 C -0.004 4.004 23 N -0.247 5.247 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.360 -14.549 -11.232 18.891 hybrid contribution -0.476 1.030 1.575 1.941 sum 3.884 -13.519 -9.657 17.062 Atomic orbital electron populations 1.21770 0.95690 1.02435 1.01353 1.21724 0.96354 0.92914 1.04341 1.22753 0.96171 0.93939 0.85146 0.89514 1.22198 0.94004 1.02286 1.03720 1.86295 1.82437 1.15020 1.37714 1.19404 0.92100 0.85313 0.88883 1.20958 1.04842 0.92421 0.99397 1.19328 0.99378 0.92737 0.92431 1.21426 0.79655 0.82656 0.88698 1.90590 1.53652 1.71020 1.32016 1.83876 1.71414 1.19001 1.38265 1.21615 1.49539 0.91591 0.87018 0.89773 1.26599 0.94994 0.95128 1.03225 1.70024 1.44399 1.09518 1.28404 0.84535 0.79048 0.77731 0.74834 1.18938 1.18123 1.18099 1.22480 1.01439 1.02906 0.91967 1.22992 0.91082 0.87003 0.99311 1.67267 1.19856 1.12063 1.25559 0.92660 0.90904 0.94387 0.87315 0.90938 0.88585 0.93500 0.91954 0.84230 0.90657 0.83358 0.77219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.81 71.98 0.71 -2.01 16 2 C -0.12 -1.85 5.64 30.59 0.17 -1.68 16 3 C 0.08 1.59 2.49 30.59 0.08 1.67 16 4 H 0.09 1.90 6.98 -2.39 -0.02 1.88 16 5 C -0.16 -2.99 9.53 71.98 0.69 -2.30 16 6 O -0.31 -8.85 9.30 -90.05 -0.84 -9.69 16 7 C 0.32 10.43 7.45 84.79 0.63 11.06 16 8 C -0.15 -5.91 9.62 22.77 0.22 -5.70 16 9 C -0.03 -1.28 5.91 -19.91 -0.12 -1.40 16 10 C 0.43 22.90 7.86 70.40 0.55 23.45 16 11 O -0.57 -33.31 15.69 19.96 0.31 -33.00 16 12 O -0.22 -12.95 9.09 12.07 0.11 -12.84 16 13 C -0.42 -25.56 9.65 67.97 0.66 -24.91 16 14 H 0.08 5.20 6.86 -2.91 -0.02 5.18 16 15 C 0.00 0.16 5.50 84.91 0.47 0.62 16 16 N -0.89 -50.55 13.67 21.64 0.30 -50.26 16 17 Si 1.02 42.35 29.55 68.60 2.03 44.37 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 C -0.17 -5.90 9.70 22.64 0.22 -5.68 16 22 C 0.15 4.10 11.16 84.61 0.94 5.05 16 23 N -0.52 -15.13 8.61 -309.16 -2.66 -17.79 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.84 7.82 -2.39 -0.02 0.82 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.14 5.49 7.74 -2.91 -0.02 5.46 16 33 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.15 5.42 7.71 -2.91 -0.02 5.40 16 35 H 0.21 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -71.63 312.01 5.55 -66.08 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.09 Total: 14.94 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.21 Total: -1.82 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -2.37 Total: -68.05 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.41 Total: -55.52 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -71.63 5.55 -66.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777185635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.501 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds