Wall clock time and date at job start Sun Mar 29 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 O 1.41600 * 120.00275 * 179.97438 * 18 16 15 20 20 C 1.42900 * 114.00141 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.46980 * 180.02562 * 20 19 18 22 22 O 1.42894 * 109.47451 * 65.00304 * 21 20 19 23 23 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 24 24 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 26 26 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 27 27 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 29 29 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 30 30 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 31 31 H 1.08999 * 109.47208 * 300.00283 * 20 19 18 32 32 H 1.09003 * 109.46976 * 60.00537 * 20 19 18 33 33 H 1.09009 * 109.47235 * 185.00570 * 21 20 19 34 34 H 1.09006 * 109.47222 * 304.99835 * 21 20 19 35 35 H 0.96706 * 114.00523 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 8 6.6293 -3.8078 -0.4102 20 6 7.7292 -3.9210 -1.3155 21 6 9.0420 -3.8757 -0.5311 22 8 9.1304 -5.0229 0.3163 23 1 -0.4849 -0.8357 -0.0852 24 1 0.0691 -1.3040 1.8430 25 1 -0.9698 -3.3393 2.7431 26 1 -0.2416 -5.5537 1.9556 27 1 1.5304 -5.7534 0.2610 28 1 2.7709 -4.7177 -1.4995 29 1 2.8121 -2.9465 -1.6708 30 1 5.2988 -3.9312 -2.0021 31 1 7.6606 -4.8660 -1.8543 32 1 7.7014 -3.0948 -2.0260 33 1 9.8811 -3.8724 -1.2270 34 1 9.0709 -2.9716 0.0771 35 1 9.9396 -5.0604 0.8444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787294997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:05 Heat of formation + Delta-G solvation = -70.068450 kcal Electronic energy + Delta-G solvation = -19635.253688 eV Core-core repulsion = 16406.989997 eV Total energy + Delta-G solvation = -3228.263692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.12410 -37.94686 -37.25475 -36.12086 -33.82408 -32.36557 -31.42783 -29.23707 -29.13777 -26.55682 -24.83519 -22.81514 -21.00960 -20.89102 -19.52897 -18.20508 -17.81758 -17.58227 -16.36458 -15.52072 -15.07988 -14.80593 -14.61273 -14.25625 -14.11997 -13.87858 -13.39514 -13.26495 -12.58085 -12.31259 -12.00982 -11.78015 -11.66316 -11.32053 -11.18319 -10.86698 -10.81354 -10.44333 -10.36087 -10.32376 -9.63102 -9.35414 -9.24325 -8.92999 -8.51028 -7.53508 -7.47923 -7.10041 -4.39658 2.13683 2.85668 2.92840 3.18131 3.31793 3.34651 3.41059 3.95307 4.05086 4.54191 4.62237 4.75771 4.90122 5.10029 5.32479 5.34011 5.47900 5.65274 5.88668 5.99881 6.20340 6.30875 6.39059 6.69661 7.03241 7.13813 7.24026 7.37147 7.44799 7.67198 7.80673 7.85941 7.89039 7.98874 8.23445 8.37600 8.81267 8.90061 8.95180 10.09782 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.005819 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.450600 B = 4811.057862 C = 6068.509956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.041 3.959 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.117 3.883 10 C -0.215 4.215 11 C -0.085 4.085 12 C -0.253 4.253 13 C -0.065 4.065 14 C -0.191 4.191 15 C -0.054 4.054 16 C 0.522 3.478 17 O -0.501 6.501 18 N -0.612 5.612 19 O -0.144 6.144 20 C 0.032 3.968 21 C 0.084 3.916 22 O -0.565 6.565 23 H 0.299 0.701 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 -4.240 -6.772 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.091 0.909 9 C 0.115 3.885 10 C -0.234 4.234 11 C -0.103 4.103 12 C -0.272 4.272 13 C -0.083 4.083 14 C -0.192 4.192 15 C -0.094 4.094 16 C 0.310 3.690 17 O -0.371 6.371 18 N -0.318 5.318 19 O -0.147 6.147 20 C -0.046 4.046 21 C 0.005 3.995 22 O -0.371 6.371 23 H 0.113 0.887 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.239 0.761 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.986 -2.602 -5.857 13.592 hybrid contribution 1.080 -1.650 -0.467 2.027 sum 13.066 -4.252 -6.324 15.126 Atomic orbital electron populations 1.70453 1.08175 1.34290 1.29177 1.26930 0.95665 1.04158 0.91344 0.83710 0.75727 0.74110 0.78040 1.19872 1.19997 1.20259 1.20468 1.02704 0.94032 1.37229 0.90908 1.17392 0.90178 0.91753 0.89218 1.21142 1.03450 0.97027 1.01782 1.20620 0.98230 0.93236 0.98222 1.20268 1.04962 0.95847 1.06146 1.20376 0.95920 0.95822 0.96203 1.18951 1.02680 0.93710 1.03899 1.20181 0.87752 1.02981 0.98486 1.21632 0.83395 0.75563 0.88376 1.90711 1.85800 1.46091 1.14500 1.48089 0.95347 1.79941 1.08405 1.90667 1.04219 1.96542 1.23298 1.22966 0.86354 1.01541 0.93760 1.22097 0.94617 0.89368 0.93452 1.86597 1.46159 1.44626 1.59685 0.88699 0.87688 0.89308 0.89348 0.89421 0.90074 0.88189 0.76130 0.91736 0.90912 0.91505 0.92264 0.77244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.16 12.32 55.55 0.68 -20.48 16 2 C 0.04 1.05 4.94 -17.34 -0.09 0.96 16 3 Si 1.06 22.16 30.00 -169.99 -5.10 17.06 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.52 -13.74 8.08 -37.74 -0.30 -14.05 16 8 H 0.07 1.91 6.73 -52.49 -0.35 1.56 16 9 C 0.12 3.16 5.30 -106.82 -0.57 2.59 16 10 C -0.21 -5.72 7.95 -38.87 -0.31 -6.03 16 11 C -0.08 -2.06 10.02 -39.66 -0.40 -2.45 16 12 C -0.25 -5.90 10.05 -39.29 -0.39 -6.30 16 13 C -0.06 -1.51 9.66 -39.66 -0.38 -1.89 16 14 C -0.19 -4.63 4.43 -103.91 -0.46 -5.09 16 15 C -0.05 -1.06 5.18 -29.03 -0.15 -1.21 16 16 C 0.52 11.10 7.61 -10.99 -0.08 11.01 16 17 O -0.50 -13.39 16.44 -12.64 -0.21 -13.60 16 18 N -0.61 -10.27 6.39 31.22 0.20 -10.07 16 19 O -0.14 -2.53 11.07 -34.83 -0.39 -2.92 16 20 C 0.03 0.36 6.61 37.16 0.25 0.61 16 21 C 0.08 0.80 7.43 37.16 0.28 1.08 16 22 O -0.57 -6.47 13.62 -40.08 -0.55 -7.02 16 23 H 0.30 8.12 6.68 -40.82 -0.27 7.84 16 24 H 0.11 2.86 6.49 -52.49 -0.34 2.52 16 25 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 29 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 30 H 0.40 4.79 8.54 -40.82 -0.35 4.44 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.38 2.34 9.12 45.56 0.42 2.76 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -35.61 307.84 -6.77 -42.38 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -3.44 Total: 10.78 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -2.61 Total: -20.78 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.88 Total: -30.55 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.14 Total: -23.54 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.10 Total: 17.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.61 -6.77 -42.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787294997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.687 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds