Wall clock time and date at job start Sun Mar 29 2020 23:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 O 1.41600 * 120.00275 * 179.97438 * 18 16 15 20 20 C 1.42900 * 114.00141 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.46980 * 180.02562 * 20 19 18 22 22 O 1.42894 * 109.47451 * 65.00304 * 21 20 19 23 23 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 24 24 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 26 26 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 27 27 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 29 29 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 30 30 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 31 31 H 1.08999 * 109.47208 * 300.00283 * 20 19 18 32 32 H 1.09003 * 109.46976 * 60.00537 * 20 19 18 33 33 H 1.09009 * 109.47235 * 185.00570 * 21 20 19 34 34 H 1.09006 * 109.47222 * 304.99835 * 21 20 19 35 35 H 0.96706 * 114.00523 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 8 6.6293 -3.8078 -0.4102 20 6 7.7292 -3.9210 -1.3155 21 6 9.0420 -3.8757 -0.5311 22 8 9.1304 -5.0229 0.3163 23 1 -0.4849 -0.8357 -0.0852 24 1 0.0691 -1.3040 1.8430 25 1 -0.9698 -3.3393 2.7431 26 1 -0.2416 -5.5537 1.9556 27 1 1.5304 -5.7534 0.2610 28 1 2.7709 -4.7177 -1.4995 29 1 2.8121 -2.9465 -1.6708 30 1 5.2988 -3.9312 -2.0021 31 1 7.6606 -4.8660 -1.8543 32 1 7.7014 -3.0948 -2.0260 33 1 9.8811 -3.8724 -1.2270 34 1 9.0709 -2.9716 0.0771 35 1 9.9396 -5.0604 0.8444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787294997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:04 Heat of formation + Delta-G solvation = -96.430755 kcal Electronic energy + Delta-G solvation = -19636.396844 eV Core-core repulsion = 16406.989997 eV Total energy + Delta-G solvation = -3229.406847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75464 -39.43852 -38.60217 -37.23018 -35.73152 -33.96720 -32.96247 -31.09744 -30.23961 -28.24439 -26.73938 -23.67938 -22.83314 -22.65918 -21.21796 -19.68810 -19.23450 -18.60981 -17.91853 -16.87637 -16.77905 -16.27609 -15.99158 -15.75554 -15.55631 -15.30729 -14.88746 -14.76969 -14.20545 -13.86339 -13.65657 -13.55097 -12.99653 -12.84851 -12.60487 -12.54465 -12.23739 -12.04322 -11.97096 -11.48919 -11.21316 -11.07243 -10.94404 -10.82771 -9.89975 -9.44478 -9.42618 -9.05498 -6.39256 0.70698 1.00175 1.17658 1.47924 1.63284 1.73336 1.77940 2.32017 2.72067 3.29509 3.46476 3.65440 3.92762 4.02785 4.13987 4.28754 4.32783 4.43752 4.49574 4.57891 4.58499 4.69892 4.71063 4.95876 5.08612 5.33517 5.50789 5.77152 5.84063 5.85880 5.99116 6.06165 6.29360 6.42575 6.47814 6.84789 6.86723 7.02479 7.41172 8.09613 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.005819 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.450600 B = 4811.057862 C = 6068.509956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.006 3.994 3 Si 1.106 2.894 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.087 3.913 10 C -0.245 4.245 11 C -0.095 4.095 12 C -0.252 4.252 13 C -0.077 4.077 14 C -0.197 4.197 15 C -0.051 4.051 16 C 0.524 3.476 17 O -0.568 6.568 18 N -0.591 5.591 19 O -0.181 6.181 20 C 0.019 3.981 21 C 0.081 3.919 22 O -0.597 6.597 23 H 0.285 0.715 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.424 0.576 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 -5.210 -8.397 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.210 4.210 3 Si 0.924 3.076 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.084 3.916 10 C -0.265 4.265 11 C -0.113 4.113 12 C -0.271 4.271 13 C -0.095 4.095 14 C -0.199 4.199 15 C -0.091 4.091 16 C 0.313 3.687 17 O -0.444 6.444 18 N -0.297 5.297 19 O -0.185 6.185 20 C -0.058 4.058 21 C 0.003 3.997 22 O -0.406 6.406 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.128 0.872 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.125 0.875 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.697 -3.601 -7.560 16.054 hybrid contribution 0.654 -1.534 0.023 1.668 sum 14.351 -5.135 -7.537 17.004 Atomic orbital electron populations 1.70550 1.08816 1.33294 1.31427 1.28195 0.95731 1.07076 0.90041 0.83145 0.74941 0.70645 0.78842 1.19278 1.20410 1.17461 1.20572 1.02685 0.94960 1.38785 0.91284 1.17789 0.90766 0.93278 0.89746 1.21154 1.05073 0.97020 1.03211 1.20920 0.98639 0.93167 0.98601 1.20725 1.04465 0.96412 1.05470 1.20846 0.95569 0.97121 0.95927 1.19469 1.03200 0.93089 1.04153 1.20215 0.85919 1.05618 0.97338 1.21681 0.84742 0.74705 0.87575 1.90684 1.86970 1.49565 1.17207 1.47607 0.95180 1.77632 1.09239 1.90659 1.04981 1.96755 1.26122 1.23457 0.85051 1.03340 0.93964 1.22300 0.94874 0.88530 0.94016 1.86532 1.48026 1.45480 1.60587 0.90270 0.89795 0.87190 0.86234 0.86001 0.85594 0.87471 0.73270 0.90551 0.88113 0.87202 0.92831 0.74977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.85 12.32 21.82 0.27 -44.58 16 2 C 0.01 0.32 4.94 85.25 0.42 0.74 16 3 Si 1.11 45.01 30.00 68.60 2.06 47.07 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.54 -29.57 8.08 23.46 0.19 -29.38 16 8 H 0.07 3.69 6.73 -2.91 -0.02 3.68 16 9 C 0.09 4.77 5.30 -21.29 -0.11 4.66 16 10 C -0.25 -13.51 7.95 22.73 0.18 -13.33 16 11 C -0.09 -4.63 10.02 22.22 0.22 -4.41 16 12 C -0.25 -11.35 10.05 22.46 0.23 -11.13 16 13 C -0.08 -3.42 9.66 22.22 0.21 -3.21 16 14 C -0.20 -9.49 4.43 -19.40 -0.09 -9.58 16 15 C -0.05 -1.93 5.18 29.10 0.15 -1.78 16 16 C 0.52 21.77 7.61 87.66 0.67 22.44 16 17 O -0.57 -30.76 16.44 14.36 0.24 -30.52 16 18 N -0.59 -18.73 6.39 -173.54 -1.11 -19.84 16 19 O -0.18 -6.10 11.07 -16.44 -0.18 -6.28 16 20 C 0.02 0.37 6.61 71.98 0.48 0.85 16 21 C 0.08 1.35 7.43 71.98 0.53 1.88 16 22 O -0.60 -12.67 13.62 -144.34 -1.97 -14.63 16 23 H 0.29 16.20 6.68 -92.71 -0.62 15.58 16 24 H 0.08 4.85 6.49 -2.91 -0.02 4.83 16 25 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 26 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 27 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 28 H 0.13 3.55 8.05 -2.39 -0.02 3.53 16 29 H 0.11 3.90 7.06 -2.39 -0.02 3.88 16 30 H 0.42 8.91 8.54 -92.71 -0.79 8.12 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 35 H 0.40 4.29 9.12 -74.05 -0.68 3.62 16 Total: -1.00 -80.63 307.84 2.20 -78.43 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.19 Total: 32.60 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 3.08 Total: -42.24 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.84 Total: -64.42 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -1.91 Total: -51.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.06 Total: 47.07 kcal Total: -80.63 2.20 -78.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787294997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.998 kcal (2) G-P(sol) polarization free energy of solvation -80.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds