Wall clock time and date at job start Mon Mar 30 2020 00:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47449 * 270.00171 * 3 2 1 5 5 H 1.48504 * 109.46882 * 30.00263 * 3 2 1 6 6 H 1.48501 * 109.47052 * 149.99698 * 3 2 1 7 7 C 1.38801 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99251 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47272 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47473 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47378 * 179.97438 * 12 11 10 14 14 C 1.46845 * 110.99951 * 294.21172 * 13 12 11 15 15 C 1.53037 * 109.52225 * 174.15937 * 14 13 12 16 16 C 1.53120 * 109.27746 * 59.17801 * 15 14 13 17 17 F 1.39899 * 109.52312 * 182.43760 * 16 15 14 18 18 F 1.39902 * 109.57187 * 62.28570 * 16 15 14 19 19 C 1.53114 * 109.16254 * 302.34805 * 16 15 14 20 20 C 1.46845 * 110.99877 * 169.99905 * 13 12 11 21 21 H 0.96995 * 119.99998 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47381 * 59.99644 * 10 9 7 23 23 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 24 24 H 1.09004 * 109.47108 * 59.99789 * 11 10 9 25 25 H 1.09004 * 109.47368 * 299.99890 * 11 10 9 26 26 H 1.09004 * 109.46862 * 59.99962 * 12 11 10 27 27 H 1.09000 * 109.47250 * 299.99985 * 12 11 10 28 28 H 1.08998 * 109.46500 * 294.17496 * 14 13 12 29 29 H 1.08995 * 109.46400 * 54.14290 * 14 13 12 30 30 H 1.09001 * 109.50550 * 299.23861 * 15 14 13 31 31 H 1.08996 * 109.50309 * 179.12374 * 15 14 13 32 32 H 1.08996 * 109.50286 * 297.71173 * 19 16 15 33 33 H 1.08997 * 109.53662 * 177.61701 * 19 16 15 34 34 H 1.08995 * 109.46773 * 305.85989 * 20 13 12 35 35 H 1.09005 * 109.46091 * 65.83934 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1511 -6.3078 -0.0018 13 7 2.6360 -7.6835 -0.0018 14 6 1.9254 -7.9794 1.2488 15 6 1.2801 -9.3638 1.1551 16 6 2.3673 -10.4124 0.9035 17 9 1.7772 -11.6729 0.7616 18 9 3.2580 -10.4319 1.9821 19 6 3.1238 -10.0542 -0.3786 20 6 3.7157 -8.6497 -0.2405 21 1 -0.4850 0.8400 0.0004 22 1 3.1244 -3.7314 0.8894 23 1 3.1243 -3.7314 -0.8905 24 1 1.3708 -5.4840 -0.8914 25 1 1.3703 -5.4847 0.8886 26 1 3.7599 -6.1481 0.8882 27 1 3.7597 -6.1473 -0.8918 28 1 2.6305 -7.9628 2.0798 29 1 1.1525 -7.2288 1.4136 30 1 0.5646 -9.3770 0.3328 31 1 0.7659 -9.5896 2.0892 32 1 2.4374 -10.0782 -1.2249 33 1 3.9268 -10.7732 -0.5408 34 1 4.2430 -8.3861 -1.1572 35 1 4.4123 -8.6302 0.5976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796537900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:07 Heat of formation + Delta-G solvation = -120.017552 kcal Electronic energy + Delta-G solvation = -17846.773232 eV Core-core repulsion = 14640.700020 eV Total energy + Delta-G solvation = -3206.073212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.17354 -47.17494 -38.89476 -34.41395 -32.44009 -31.57452 -31.15666 -26.14993 -25.41151 -24.01002 -23.16294 -20.85981 -20.27375 -17.69786 -17.46311 -17.00272 -16.48495 -15.69259 -15.47814 -14.83008 -14.80989 -14.39488 -14.08180 -13.96619 -13.50245 -13.16506 -13.03325 -12.79798 -12.69011 -12.56898 -11.84647 -11.80318 -11.62442 -11.36801 -11.30985 -11.07240 -10.82146 -10.65889 -10.60897 -10.24547 -9.55228 -9.06479 -8.51249 -8.31160 -6.53584 -6.23499 -3.93773 3.20459 3.21477 3.28460 3.43701 3.53455 3.74172 3.83544 4.09814 4.21744 4.23937 4.64522 4.91752 5.00134 5.06472 5.12618 5.19352 5.24459 5.32155 5.35510 5.46470 5.58158 5.60473 5.67209 5.69357 5.77143 5.89873 6.03545 6.30859 6.54937 6.69907 6.88059 6.92237 7.59895 8.35926 9.22868 10.84707 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.058567 B = 0.003133 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.969559 B = 8934.500980 C = 9123.244239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.113 4.113 11 C -0.095 4.095 12 C 0.061 3.939 13 N -0.539 5.539 14 C 0.050 3.950 15 C -0.154 4.154 16 C 0.284 3.716 17 F -0.204 7.204 18 F -0.202 7.202 19 C -0.153 4.153 20 C 0.055 3.945 21 H 0.267 0.733 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -19.484 0.550 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.263 4.263 11 C -0.133 4.133 12 C -0.068 4.068 13 N -0.264 5.264 14 C -0.078 4.078 15 C -0.192 4.192 16 C 0.248 3.752 17 F -0.185 7.185 18 F -0.184 7.184 19 C -0.191 4.191 20 C -0.074 4.074 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.107 -19.629 0.197 20.055 hybrid contribution 2.484 1.177 0.769 2.854 sum 6.591 -18.452 0.966 19.618 Atomic orbital electron populations 1.70021 1.05917 1.27329 1.47259 1.25015 0.95082 0.99089 0.94612 0.86167 0.79437 0.81556 0.78371 1.20261 1.20762 1.19704 1.22692 0.94512 0.90815 1.58477 0.90983 1.84624 1.09498 0.99400 1.96851 1.23232 1.02912 0.97352 1.02766 1.21299 0.96897 0.91918 1.03205 1.22189 0.97311 0.86230 1.01041 1.61986 1.26782 1.03033 1.34614 1.22136 0.98981 0.95876 0.90819 1.22598 0.97417 0.93736 1.05435 1.21243 0.87119 0.80899 0.85967 1.93002 1.84914 1.44401 1.96137 1.92992 1.70234 1.96673 1.58464 1.22579 1.01783 0.98449 0.96327 1.22032 0.92856 0.90345 1.02130 0.92304 0.92329 0.92093 0.90625 0.91623 0.94628 0.90471 0.93844 0.88298 0.87755 0.89082 0.87814 0.89245 0.89209 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.22 55.49 0.73 -25.16 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.75 9.50 30.94 0.29 -14.46 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.13 -3.42 21.44 -107.50 -2.30 -5.72 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 11 C -0.09 -1.47 5.15 -26.74 -0.14 -1.61 16 12 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 13 N -0.54 -6.00 4.66 -234.68 -1.09 -7.09 16 14 C 0.05 0.53 5.18 -3.83 -0.02 0.51 16 15 C -0.15 -1.43 5.62 -26.65 -0.15 -1.58 16 16 C 0.28 2.85 2.12 -26.61 -0.06 2.79 16 17 F -0.20 -2.26 17.07 2.25 0.04 -2.22 16 18 F -0.20 -2.36 16.23 2.25 0.04 -2.32 16 19 C -0.15 -1.29 5.62 -26.65 -0.15 -1.44 16 20 C 0.05 0.51 5.35 -3.84 -0.02 0.49 16 21 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 23 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.02 6.43 -51.93 -0.33 0.69 16 26 H 0.04 0.45 8.12 -51.93 -0.42 0.02 16 27 H 0.08 0.92 7.99 -51.93 -0.41 0.51 16 28 H 0.04 0.48 7.88 -51.93 -0.41 0.07 16 29 H 0.10 1.09 6.21 -51.93 -0.32 0.76 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.74 8.02 -51.93 -0.42 0.32 16 35 H 0.04 0.42 7.88 -51.93 -0.41 0.01 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -30.81 303.77 -8.41 -39.22 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.23 Total: -3.03 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.14 Total: -14.66 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: -0.36 Total: -32.26 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.30 Total: -5.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.81 -8.41 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796537900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.797 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds