Wall clock time and date at job start Mon Mar 30 2020 00:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47449 * 270.00171 * 3 2 1 5 5 H 1.48504 * 109.46882 * 30.00263 * 3 2 1 6 6 H 1.48501 * 109.47052 * 149.99698 * 3 2 1 7 7 C 1.38801 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99251 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47272 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47473 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47378 * 179.97438 * 12 11 10 14 14 C 1.46845 * 110.99951 * 294.21172 * 13 12 11 15 15 C 1.53037 * 109.52225 * 174.15937 * 14 13 12 16 16 C 1.53120 * 109.27746 * 59.17801 * 15 14 13 17 17 F 1.39899 * 109.52312 * 182.43760 * 16 15 14 18 18 F 1.39902 * 109.57187 * 62.28570 * 16 15 14 19 19 C 1.53114 * 109.16254 * 302.34805 * 16 15 14 20 20 C 1.46845 * 110.99877 * 169.99905 * 13 12 11 21 21 H 0.96995 * 119.99998 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47381 * 59.99644 * 10 9 7 23 23 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 24 24 H 1.09004 * 109.47108 * 59.99789 * 11 10 9 25 25 H 1.09004 * 109.47368 * 299.99890 * 11 10 9 26 26 H 1.09004 * 109.46862 * 59.99962 * 12 11 10 27 27 H 1.09000 * 109.47250 * 299.99985 * 12 11 10 28 28 H 1.08998 * 109.46500 * 294.17496 * 14 13 12 29 29 H 1.08995 * 109.46400 * 54.14290 * 14 13 12 30 30 H 1.09001 * 109.50550 * 299.23861 * 15 14 13 31 31 H 1.08996 * 109.50309 * 179.12374 * 15 14 13 32 32 H 1.08996 * 109.50286 * 297.71173 * 19 16 15 33 33 H 1.08997 * 109.53662 * 177.61701 * 19 16 15 34 34 H 1.08995 * 109.46773 * 305.85989 * 20 13 12 35 35 H 1.09005 * 109.46091 * 65.83934 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1511 -6.3078 -0.0018 13 7 2.6360 -7.6835 -0.0018 14 6 1.9254 -7.9794 1.2488 15 6 1.2801 -9.3638 1.1551 16 6 2.3673 -10.4124 0.9035 17 9 1.7772 -11.6729 0.7616 18 9 3.2580 -10.4319 1.9821 19 6 3.1238 -10.0542 -0.3786 20 6 3.7157 -8.6497 -0.2405 21 1 -0.4850 0.8400 0.0004 22 1 3.1244 -3.7314 0.8894 23 1 3.1243 -3.7314 -0.8905 24 1 1.3708 -5.4840 -0.8914 25 1 1.3703 -5.4847 0.8886 26 1 3.7599 -6.1481 0.8882 27 1 3.7597 -6.1473 -0.8918 28 1 2.6305 -7.9628 2.0798 29 1 1.1525 -7.2288 1.4136 30 1 0.5646 -9.3770 0.3328 31 1 0.7659 -9.5896 2.0892 32 1 2.4374 -10.0782 -1.2249 33 1 3.9268 -10.7732 -0.5408 34 1 4.2430 -8.3861 -1.1572 35 1 4.4123 -8.6302 0.5976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796537900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:07 Heat of formation + Delta-G solvation = -138.479752 kcal Electronic energy + Delta-G solvation = -17847.573813 eV Core-core repulsion = 14640.700020 eV Total energy + Delta-G solvation = -3206.873793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.99893 -48.01277 -39.75733 -35.51741 -34.59153 -32.44993 -32.10413 -27.90696 -26.94020 -24.85200 -24.12028 -22.04930 -21.08138 -19.54691 -18.47917 -17.83938 -17.28510 -16.88749 -16.74251 -16.51477 -15.88914 -15.72597 -15.34817 -14.86327 -14.71289 -14.35440 -13.95445 -13.88090 -13.69501 -13.45283 -13.33750 -12.98056 -12.94309 -12.79764 -12.57428 -12.39107 -12.29834 -12.12499 -11.67299 -11.37931 -11.21098 -11.12565 -10.29930 -9.39285 -8.65015 -8.36603 -6.12436 1.32273 1.39959 1.49306 1.75880 2.29281 2.69785 2.83340 2.97704 3.10363 3.33441 3.35146 3.46553 3.86942 4.01516 4.17196 4.18918 4.26988 4.38364 4.40991 4.56186 4.57490 4.60880 4.70571 4.80788 4.85250 4.90770 4.94877 5.05363 5.20968 5.33975 5.40656 5.96122 6.03155 6.18903 7.05818 8.72755 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.058567 B = 0.003133 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.969559 B = 8934.500980 C = 9123.244239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.993 3.007 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.198 6.198 10 C -0.088 4.088 11 C -0.083 4.083 12 C 0.071 3.929 13 N -0.544 5.544 14 C 0.050 3.950 15 C -0.150 4.150 16 C 0.278 3.722 17 F -0.210 7.210 18 F -0.213 7.213 19 C -0.148 4.148 20 C 0.055 3.945 21 H 0.271 0.729 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -19.918 0.170 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.031 5.969 10 C -0.238 4.238 11 C -0.122 4.122 12 C -0.058 4.058 13 N -0.268 5.268 14 C -0.078 4.078 15 C -0.188 4.188 16 C 0.242 3.758 17 F -0.191 7.191 18 F -0.195 7.195 19 C -0.186 4.186 20 C -0.073 4.073 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.469 -20.084 -0.184 20.816 hybrid contribution 2.060 1.208 0.899 2.551 sum 7.529 -18.876 0.714 20.335 Atomic orbital electron populations 1.70154 1.07675 1.28524 1.48036 1.26063 0.96027 1.03104 0.93800 0.85023 0.78178 0.76420 0.78836 1.19259 1.19994 1.18725 1.23052 0.94743 0.92087 1.58774 0.90927 1.84630 1.14130 1.01129 1.97028 1.23163 1.00108 0.97596 1.02923 1.21179 0.97994 0.90148 1.02857 1.21993 0.95706 0.86384 1.01704 1.61954 1.27526 1.02591 1.34775 1.22125 0.98721 0.96439 0.90557 1.22578 0.97320 0.92731 1.06189 1.21490 0.87312 0.80646 0.86378 1.92988 1.85067 1.44904 1.96169 1.92971 1.70614 1.96703 1.59176 1.22582 1.02274 0.98154 0.95576 1.22107 0.92282 0.90221 1.02709 0.91984 0.92161 0.91708 0.91228 0.91805 0.94431 0.89386 0.94321 0.88991 0.87059 0.88379 0.86958 0.87736 0.87693 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.66 13.22 21.65 0.29 -54.37 16 2 C 0.01 0.85 5.49 84.86 0.47 1.31 16 3 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.54 -30.98 9.50 67.95 0.65 -30.33 16 8 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 9 S -0.20 -10.42 21.44 -56.49 -1.21 -11.63 16 10 C -0.09 -3.43 5.67 71.98 0.41 -3.02 16 11 C -0.08 -2.50 5.15 30.59 0.16 -2.34 16 12 C 0.07 1.65 4.96 86.30 0.43 2.07 16 13 N -0.54 -11.03 4.66 -896.38 -4.17 -15.20 16 14 C 0.05 0.99 5.18 86.33 0.45 1.43 16 15 C -0.15 -2.58 5.62 30.65 0.17 -2.40 16 16 C 0.28 5.11 2.12 30.67 0.06 5.18 16 17 F -0.21 -4.35 17.07 44.97 0.77 -3.58 16 18 F -0.21 -4.69 16.23 44.97 0.73 -3.96 16 19 C -0.15 -2.14 5.62 30.64 0.17 -1.97 16 20 C 0.05 0.88 5.35 86.33 0.46 1.34 16 21 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 22 H 0.06 2.31 8.14 -2.40 -0.02 2.29 16 23 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.06 1.95 6.43 -2.39 -0.02 1.94 16 26 H 0.04 0.87 8.12 -2.38 -0.02 0.85 16 27 H 0.09 1.87 7.99 -2.39 -0.02 1.85 16 28 H 0.04 0.81 7.88 -2.39 -0.02 0.79 16 29 H 0.09 1.95 6.21 -2.39 -0.01 1.94 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.40 8.02 -2.39 -0.02 1.38 16 35 H 0.04 0.68 7.88 -2.38 -0.02 0.66 16 Total: -1.00 -65.98 303.77 2.92 -63.06 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.07 Total: 8.70 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 3.42 Total: -28.72 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -3.89 Total: -69.57 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 1.50 Total: -7.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -10.42 SS G_CDS: -1.21 Total: -11.63 kcal Total: -65.98 2.92 -63.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796537900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.416 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds