Wall clock time and date at job start Mon Mar 30 2020 00:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48493 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46997 * 300.00021 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00015 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 O 1.45206 * 109.46777 * 180.02562 * 11 10 9 13 13 C 1.34778 * 117.00148 * 179.97438 * 12 11 10 14 14 O 1.21513 * 119.99601 * 0.02562 * 13 12 11 15 15 C 1.47373 * 120.00335 * 180.02562 * 13 12 11 16 16 C 1.36884 * 126.95155 * 179.71518 * 15 13 12 17 17 C 1.41257 * 103.83690 * 179.87151 * 16 15 13 18 18 C 1.50703 * 126.69981 * 180.13297 * 17 16 15 19 19 C 1.53012 * 117.49814 * 343.90084 * 18 17 16 20 20 C 1.53002 * 59.99873 * 252.51317 * 19 18 17 21 21 N 1.30121 * 106.59927 * 0.39223 * 17 16 15 22 22 O 1.20878 * 112.00011 * 359.74391 * 21 17 16 23 23 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 25 25 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 26 26 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 27 27 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 28 28 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 29 29 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 30 30 H 1.07997 * 128.07997 * 359.97367 * 16 15 13 31 31 H 1.08995 * 115.54922 * 129.61012 * 18 17 16 32 32 H 1.09002 * 117.49464 * 0.02562 * 19 18 17 33 33 H 1.09001 * 117.49446 * 145.01570 * 19 18 17 34 34 H 1.09007 * 117.49176 * 252.50849 * 20 19 18 35 35 H 1.08997 * 117.51707 * 107.48987 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 8 2.4240 -6.0907 0.0005 13 6 1.9090 -7.3362 0.0006 14 8 0.7043 -7.4954 -0.0003 15 6 2.8067 -8.5049 0.0018 16 6 2.4405 -9.8238 0.0074 17 6 3.6716 -10.5163 0.0029 18 6 3.8642 -12.0110 0.0032 19 6 2.6628 -12.8781 0.3853 20 6 3.8362 -12.7265 1.3554 21 7 4.6070 -9.6117 0.0039 22 8 4.1533 -8.4913 0.0033 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 2.8721 -3.6043 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8541 -5.0446 -0.8903 29 1 0.8535 -5.0451 0.8897 30 1 1.4431 -10.2382 0.0124 31 1 4.5430 -12.3977 -0.7569 32 1 1.7330 -12.3673 0.6359 33 1 2.5509 -13.8354 -0.1237 34 1 4.4963 -13.5844 1.4846 35 1 3.6789 -12.1162 2.2447 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799579346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:28 Heat of formation + Delta-G solvation = -26.365473 kcal Electronic energy + Delta-G solvation = -18617.894514 eV Core-core repulsion = 15391.525925 eV Total energy + Delta-G solvation = -3226.368588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.25268 -41.57571 -38.61327 -38.07636 -35.96693 -34.52295 -33.82474 -33.19401 -29.16299 -26.41824 -25.80091 -24.73299 -23.52423 -22.96888 -22.19229 -21.26100 -19.46561 -19.03848 -18.72951 -18.06410 -17.68090 -17.32742 -16.48970 -16.36080 -15.68752 -15.45651 -15.07050 -14.83688 -14.17294 -13.93986 -13.84427 -13.26556 -13.01257 -12.86924 -12.52560 -12.45396 -12.41239 -12.27744 -12.16349 -12.16082 -11.53295 -11.46730 -11.42652 -11.23479 -11.11855 -10.80171 -10.56808 -8.21450 -6.32195 -0.63785 0.77308 0.96309 1.40623 1.41960 1.42534 1.55879 1.86584 2.41899 2.57692 2.92033 3.12777 3.32933 3.63362 3.70783 3.87672 3.98920 3.99217 3.99767 4.11830 4.33662 4.40078 4.66854 4.75866 4.78418 4.80002 4.97902 5.04028 5.08140 5.18937 5.22012 5.50066 5.65433 5.81538 6.17848 6.26352 6.83453 6.84352 7.37222 8.90817 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.059348 B = 0.002726 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.677440 B =10269.799737 C =10632.510990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.097 4.097 11 C 0.077 3.923 12 O -0.345 6.345 13 C 0.557 3.443 14 O -0.497 6.497 15 C -0.074 4.074 16 C -0.121 4.121 17 C 0.049 3.951 18 C -0.111 4.111 19 C -0.147 4.147 20 C -0.161 4.161 21 N -0.353 5.353 22 O 0.119 5.881 23 H 0.264 0.736 24 H 0.000 1.000 25 H 0.001 0.999 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.212 0.788 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 -26.609 0.718 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.135 4.135 11 C 0.004 3.996 12 O -0.261 6.261 13 C 0.399 3.601 14 O -0.385 6.385 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.109 4.109 18 C -0.129 4.129 19 C -0.184 4.184 20 C -0.199 4.199 21 N -0.054 5.054 22 O 0.045 5.955 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.229 0.771 31 H 0.154 0.846 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.863 -26.543 0.715 27.425 hybrid contribution -0.756 1.203 -0.050 1.421 sum 6.107 -25.340 0.665 26.074 Atomic orbital electron populations 1.70094 1.07755 1.27843 1.51575 1.25974 0.95793 1.03396 0.94688 0.85368 0.79084 0.78661 0.77750 1.18560 1.20413 1.20394 1.21652 0.93720 0.91952 1.50653 0.91848 1.18939 0.94222 0.92161 0.95794 1.21499 0.98899 0.90338 1.02726 1.23392 0.90644 0.82515 1.03039 1.86617 1.42087 1.14617 1.82755 1.19264 0.85348 0.82361 0.73122 1.90928 1.14690 1.86531 1.46389 1.22823 0.84341 0.94497 1.12155 1.23191 1.02218 0.89026 0.99765 1.23186 0.87958 0.97812 1.01921 1.20341 1.06655 0.83106 1.02833 1.23235 0.92429 1.01179 1.01535 1.23154 1.02459 1.02357 0.91890 1.73758 1.24123 0.90318 1.17207 1.85122 1.18759 1.24501 1.67098 0.92678 0.98118 0.98096 0.91444 0.91456 0.90611 0.90617 0.77106 0.84593 0.87639 0.85439 0.86001 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.10 -3.93 5.53 30.60 0.17 -3.76 16 11 C 0.08 2.70 5.48 71.98 0.39 3.10 16 12 O -0.35 -11.26 10.23 -56.19 -0.57 -11.83 16 13 C 0.56 16.46 7.96 70.23 0.56 17.02 16 14 O -0.50 -16.10 16.71 19.79 0.33 -15.77 16 15 C -0.07 -1.86 7.37 24.36 0.18 -1.68 16 16 C -0.12 -2.31 10.26 22.69 0.23 -2.08 16 17 C 0.05 0.93 6.94 43.56 0.30 1.24 16 18 C -0.11 -1.37 6.33 -11.53 -0.07 -1.44 16 19 C -0.15 -1.07 10.04 30.60 0.31 -0.76 16 20 C -0.16 -1.51 10.23 30.60 0.31 -1.19 16 21 N -0.35 -8.76 12.04 -48.85 -0.59 -9.35 16 22 O 0.12 3.17 11.23 65.60 0.74 3.91 16 23 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.21 2.80 7.61 -2.91 -0.02 2.78 16 31 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 0.71 7.33 -2.39 -0.02 0.69 16 33 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -66.20 316.44 6.54 -59.67 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 1.09 Total: 1.13 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 3.23 Total: -17.83 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.30 Total: -65.24 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.49 Total: -23.70 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.20 6.54 -59.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799579346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.301 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds