Wall clock time and date at job start Mon Mar 30 2020 00:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00413 * 2 1 4 4 H 1.48492 * 109.47063 * 270.00489 * 3 2 1 5 5 H 1.48503 * 109.46715 * 30.00006 * 3 2 1 6 6 H 1.48500 * 109.47028 * 149.99829 * 3 2 1 7 7 C 1.37884 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99608 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47320 * 179.97438 * 10 9 7 12 12 O 1.45196 * 109.47235 * 180.02562 * 11 10 9 13 13 C 1.34764 * 116.99787 * 180.02562 * 12 11 10 14 14 O 1.21524 * 120.00438 * 359.97438 * 13 12 11 15 15 C 1.47255 * 119.99771 * 179.97438 * 13 12 11 16 16 C 1.37437 * 128.57491 * 0.02562 * 15 13 12 17 17 O 1.33474 * 106.32842 * 179.97438 * 16 15 13 18 18 N 1.20652 * 113.17171 * 0.02562 * 17 16 15 19 19 C 1.29992 * 112.32861 * 359.97438 * 18 17 16 20 20 C 1.50695 * 127.34318 * 180.02562 * 19 18 17 21 21 C 1.53007 * 117.49563 * 8.72845 * 20 19 18 22 22 C 1.53003 * 117.50308 * 300.06715 * 20 19 18 23 23 H 0.96998 * 119.99714 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.47401 * 59.99531 * 9 7 2 25 25 H 1.08998 * 109.46568 * 299.99250 * 9 7 2 26 26 H 1.09004 * 109.47224 * 59.99505 * 10 9 7 27 27 H 1.09004 * 109.47180 * 299.99629 * 10 9 7 28 28 H 1.09004 * 109.47191 * 59.99712 * 11 10 9 29 29 H 1.09004 * 109.46875 * 300.00042 * 11 10 9 30 30 H 1.08002 * 126.83551 * 0.02562 * 16 15 13 31 31 H 1.09003 * 115.55034 * 154.39270 * 20 19 18 32 32 H 1.08991 * 117.49791 * 359.97438 * 21 20 19 33 33 H 1.08999 * 117.49735 * 145.02193 * 21 20 19 34 34 H 1.09003 * 117.49822 * 214.97976 * 22 20 19 35 35 H 1.09000 * 117.49143 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 8 2.4235 -6.0908 0.0018 13 6 1.9084 -7.3361 0.0019 14 8 0.7036 -7.4953 0.0019 15 6 2.8053 -8.5039 0.0019 16 6 4.1795 -8.5290 0.0024 17 8 4.5313 -9.8166 0.0028 18 7 3.5864 -10.5669 0.0021 19 6 2.4519 -9.9323 0.0017 20 6 1.0693 -10.5317 0.0015 21 6 0.9547 -12.0435 0.2076 22 6 0.6917 -11.4368 -1.1730 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8895 28 1 0.8530 -5.0451 -0.8886 29 1 0.8537 -5.0446 0.8914 30 1 4.8427 -7.6766 0.0031 31 1 0.2851 -9.9050 0.4262 32 1 1.8793 -12.6044 0.3430 33 1 0.0949 -12.4113 0.7676 34 1 -0.3409 -11.4057 -1.5207 35 1 1.4434 -11.5982 -1.9457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810584524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:28 Heat of formation + Delta-G solvation = -14.719807 kcal Electronic energy + Delta-G solvation = -18868.717993 eV Core-core repulsion = 15642.854398 eV Total energy + Delta-G solvation = -3225.863594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.23355 -40.11357 -37.80413 -36.46189 -34.08389 -33.53612 -32.28189 -31.64917 -27.39910 -25.51506 -24.58448 -23.17275 -22.68493 -21.10583 -20.51596 -20.39687 -18.31910 -17.99225 -17.23301 -16.65297 -16.30358 -16.08021 -15.71005 -14.88188 -14.50300 -14.09720 -13.96657 -13.18965 -12.45465 -12.27152 -12.23786 -12.01479 -11.92602 -11.89249 -11.61577 -11.00899 -10.87149 -10.71374 -10.68553 -10.49633 -10.47188 -10.08213 -9.84694 -9.77790 -9.56915 -9.20717 -8.42085 -6.06858 -4.10143 0.71254 1.38857 2.39698 2.80267 2.97783 3.28788 3.35218 3.38354 3.50077 3.67583 3.90110 4.40607 4.54381 4.59303 4.70366 4.74578 4.93711 5.24303 5.29246 5.32685 5.42368 5.50538 5.53896 5.59952 5.79347 5.85345 5.93925 6.36035 6.47200 6.73704 6.91574 7.55942 7.66476 7.75381 7.88911 7.91175 8.31676 8.96065 9.54388 11.04571 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.041638 B = 0.003053 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.295134 B = 9169.424074 C = 9746.460335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.353 6.353 13 C 0.541 3.459 14 O -0.498 6.498 15 C -0.239 4.239 16 C 0.027 3.973 17 O 0.096 5.904 18 N -0.358 5.358 19 C 0.106 3.894 20 C -0.090 4.090 21 C -0.164 4.164 22 C -0.157 4.157 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.238 0.762 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -21.243 -0.358 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.270 6.270 13 C 0.384 3.616 14 O -0.387 6.387 15 C -0.244 4.244 16 C -0.054 4.054 17 O 0.039 5.961 18 N -0.065 5.065 19 C -0.056 4.056 20 C -0.109 4.109 21 C -0.201 4.201 22 C -0.195 4.195 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.254 0.746 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.703 -22.389 -0.348 23.106 hybrid contribution -0.097 1.923 0.000 1.926 sum 5.606 -20.465 -0.348 21.222 Atomic orbital electron populations 1.69964 1.06096 1.26816 1.50430 1.25033 0.94883 0.99389 0.95153 0.86541 0.79805 0.83205 0.78153 1.20599 1.21176 1.19799 1.21162 0.93117 0.90648 1.51153 0.92410 1.19052 0.93830 0.90680 0.97754 1.21785 1.00008 0.90814 1.02042 1.23595 0.91122 0.83020 1.02482 1.86529 1.42594 1.14458 1.83420 1.19421 0.86085 0.82673 0.73415 1.90843 1.15509 1.86794 1.45538 1.21352 0.93239 0.92638 1.17219 1.26734 0.95637 0.88489 0.94580 1.84594 1.30699 1.13841 1.66984 1.73630 0.95225 1.17058 1.20608 1.23829 0.94667 0.88132 0.98952 1.20412 0.90869 0.93524 1.06132 1.23069 1.04027 0.93392 0.99638 1.23051 1.03191 1.01671 0.91573 0.92851 0.96188 0.96169 0.92049 0.92048 0.91205 0.91217 0.74589 0.84242 0.88017 0.87718 0.87510 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.16 5.53 -26.74 -0.15 -2.30 16 11 C 0.07 1.24 5.48 37.16 0.20 1.44 16 12 O -0.35 -5.54 10.13 -40.67 -0.41 -5.95 16 13 C 0.54 8.22 7.95 34.39 0.27 8.50 16 14 O -0.50 -8.69 15.59 -19.28 -0.30 -8.99 16 15 C -0.24 -2.98 6.47 -102.91 -0.67 -3.64 16 16 C 0.03 0.25 12.24 30.44 0.37 0.62 16 17 O 0.10 0.97 11.06 18.70 0.21 1.18 16 18 N -0.36 -4.22 11.71 34.79 0.41 -3.81 16 19 C 0.11 1.31 7.08 -79.76 -0.56 0.74 16 20 C -0.09 -1.00 5.90 -91.77 -0.54 -1.54 16 21 C -0.16 -1.42 10.17 -26.69 -0.27 -1.69 16 22 C -0.16 -1.42 10.24 -26.69 -0.27 -1.69 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.24 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.65 7.29 -51.93 -0.38 1.27 16 32 H 0.10 0.91 7.97 -51.93 -0.41 0.50 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -31.58 315.86 -6.35 -37.92 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.56 Total: -3.25 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.16 Total: -12.35 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 1.14 Total: -29.55 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.51 Total: -13.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.58 -6.35 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810584524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.204 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds