Wall clock time and date at job start Mon Mar 30 2020 00:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48499 * 109.47292 * 239.99983 * 3 2 1 5 5 H 1.48495 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46765 * 120.00653 * 3 2 1 7 7 C 1.37875 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99958 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47016 * 179.97438 * 14 13 11 16 16 N 1.30250 * 125.62092 * 90.02704 * 15 14 13 17 17 C 1.34474 * 108.70209 * 179.97438 * 16 15 14 18 18 C 1.34331 * 107.66806 * 359.97438 * 17 16 15 19 19 C 1.50706 * 126.44062 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.49620 * 188.74524 * 19 18 17 21 21 C 1.53004 * 117.49504 * 120.08683 * 19 18 17 22 22 O 1.33967 * 125.61663 * 269.71941 * 15 14 13 23 23 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46932 * 60.00111 * 9 7 2 25 25 H 1.09005 * 109.47238 * 300.00488 * 9 7 2 26 26 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 27 27 H 1.08997 * 109.47279 * 300.00509 * 10 9 7 28 28 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 29 29 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 30 30 H 1.08001 * 126.16772 * 180.02562 * 17 16 15 31 31 H 1.08997 * 115.55221 * 334.42260 * 19 18 17 32 32 H 1.09003 * 117.49731 * 0.02562 * 20 19 18 33 33 H 1.08997 * 117.49699 * 145.01981 * 20 19 18 34 34 H 1.08996 * 117.50220 * 214.97434 * 21 19 18 35 35 H 1.08994 * 117.50014 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2835 -4.9671 0.0010 13 8 2.1629 -6.1296 0.0007 14 6 1.3721 -7.3473 0.0019 15 6 2.2901 -8.5425 0.0018 16 7 2.7526 -9.1439 1.0606 17 6 3.5357 -10.1646 0.6692 18 6 3.5453 -10.1793 -0.6740 19 6 4.2894 -11.1511 -1.5533 20 6 4.3247 -10.8607 -3.0551 21 6 3.4644 -12.0067 -2.5168 22 8 2.7604 -9.1650 -1.0872 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8719 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8904 28 1 0.7436 -7.3716 0.8921 29 1 0.7430 -7.3728 -0.8878 30 1 4.0616 -10.8496 1.3178 31 1 5.1740 -11.6060 -1.1077 32 1 3.8100 -9.9666 -3.4070 33 1 5.2325 -11.1248 -3.5976 34 1 3.8064 -13.0242 -2.7054 35 1 2.3834 -11.8670 -2.5143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:55 Heat of formation + Delta-G solvation = -44.955987 kcal Electronic energy + Delta-G solvation = -18718.322692 eV Core-core repulsion = 15491.147959 eV Total energy + Delta-G solvation = -3227.174734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.61615 -40.07485 -37.65646 -36.35807 -34.97104 -33.61664 -31.65173 -30.97842 -27.89280 -25.84545 -23.48491 -22.94802 -22.56263 -22.02274 -20.79467 -19.94134 -17.65720 -17.52663 -16.77011 -16.56841 -16.28305 -15.96552 -15.56653 -14.96988 -14.47874 -13.93964 -13.59537 -13.57101 -12.80173 -12.47659 -12.31459 -12.26836 -12.04411 -11.56642 -11.47144 -11.24546 -11.18712 -10.95137 -10.67852 -10.64829 -10.62829 -10.06875 -10.05426 -9.63798 -9.21655 -8.86754 -8.38480 -6.02482 -4.07582 0.98459 2.07881 2.37156 2.70588 3.17536 3.32801 3.37370 3.37818 3.39795 3.82061 4.06338 4.30082 4.43023 4.43954 4.68524 4.76918 5.00941 5.14078 5.16410 5.23788 5.32956 5.39563 5.48582 5.55472 5.63236 5.74223 6.00226 6.08302 6.15353 6.50759 6.82231 7.46706 7.64320 7.70785 7.96213 8.15657 8.34433 8.99073 9.56551 11.08474 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.002928 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.197029 B = 9559.409034 C = 9786.372958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.101 4.101 11 C 0.463 3.537 12 O -0.500 6.500 13 O -0.361 6.361 14 C 0.163 3.837 15 C 0.191 3.809 16 N -0.456 5.456 17 C -0.035 4.035 18 C -0.008 4.008 19 C -0.082 4.082 20 C -0.168 4.168 21 C -0.164 4.164 22 O -0.192 6.192 23 H 0.263 0.737 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.187 0.813 31 H 0.141 0.859 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -23.986 -3.746 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.139 4.139 11 C 0.306 3.694 12 O -0.386 6.386 13 O -0.279 6.279 14 C 0.088 3.912 15 C -0.015 4.015 16 N -0.187 5.187 17 C -0.175 4.175 18 C -0.062 4.062 19 C -0.101 4.101 20 C -0.204 4.204 21 C -0.201 4.201 22 O -0.078 6.078 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.204 0.796 31 H 0.159 0.841 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.662 -23.660 -3.186 25.073 hybrid contribution 0.550 0.538 -0.576 0.961 sum 8.213 -23.122 -3.762 24.824 Atomic orbital electron populations 1.69978 1.06093 1.26927 1.49776 1.25016 0.94865 0.99337 0.95071 0.86591 0.79504 0.82842 0.78657 1.20161 1.21245 1.20141 1.21106 0.93062 0.90597 1.52030 0.92321 1.19039 0.93207 0.89161 0.99015 1.21822 1.00769 0.87022 1.04277 1.24899 0.88033 0.85003 0.71445 1.90657 1.15691 1.87320 1.44920 1.86633 1.41836 1.14208 1.85217 1.20793 0.88168 0.76560 1.05658 1.25541 0.99937 0.97382 0.78619 1.70466 1.10829 1.07317 1.30064 1.23042 1.02407 0.99357 0.92656 1.22466 0.97203 0.91792 0.94698 1.20442 1.00469 0.98506 0.90637 1.23089 1.02808 1.00744 0.93804 1.23128 0.98892 0.96538 1.01569 1.84358 1.49662 1.36093 1.37700 0.92753 0.95484 0.95445 0.88660 0.88746 0.86747 0.88331 0.79583 0.84142 0.87905 0.87530 0.87459 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.86 4.26 -27.89 -0.12 0.74 16 10 C -0.10 -2.06 5.75 -27.89 -0.16 -2.22 16 11 C 0.46 8.99 7.96 36.01 0.29 9.28 16 12 O -0.50 -11.01 15.73 -18.75 -0.29 -11.30 16 13 O -0.36 -6.13 10.20 -39.27 -0.40 -6.53 16 14 C 0.16 2.31 6.09 36.01 0.22 2.53 16 15 C 0.19 2.71 7.98 -12.95 -0.10 2.60 16 16 N -0.46 -6.56 11.29 -11.10 -0.13 -6.68 16 17 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 18 C -0.01 -0.09 6.85 -35.68 -0.24 -0.33 16 19 C -0.08 -0.59 6.25 -91.77 -0.57 -1.16 16 20 C -0.17 -1.12 10.18 -26.69 -0.27 -1.39 16 21 C -0.16 -0.99 10.24 -26.69 -0.27 -1.26 16 22 O -0.19 -2.52 10.55 5.37 0.06 -2.47 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 25 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 26 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 27 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.11 1.53 8.13 -51.93 -0.42 1.11 16 29 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.84 8.00 -51.93 -0.42 0.42 16 33 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -33.39 317.28 -6.73 -40.13 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.60 Total: -2.87 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.86 Total: -5.28 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.61 Total: -32.85 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.64 Total: -20.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.39 -6.73 -40.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.831 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds