Wall clock time and date at job start Mon Mar 30 2020 00:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48507 * 109.46942 * 270.00534 * 3 2 1 5 5 H 1.48498 * 109.47308 * 30.00019 * 3 2 1 6 6 H 1.48497 * 109.47108 * 150.00537 * 3 2 1 7 7 C 1.37877 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00438 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46797 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00682 * 0.02562 * 11 10 9 13 13 O 1.34237 * 120.00066 * 180.02562 * 11 10 9 14 14 C 1.45190 * 117.00155 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47141 * 179.97438 * 14 13 11 16 16 N 1.46507 * 109.47241 * 65.00030 * 15 14 13 17 17 C 1.35763 * 119.62574 * 90.00014 * 16 15 14 18 18 C 1.35346 * 120.69997 * 180.27933 * 17 16 15 19 19 C 1.40202 * 119.94860 * 359.43664 * 18 17 16 20 20 C 1.36395 * 119.26120 * 0.57668 * 19 18 17 21 21 C 1.34664 * 119.61981 * 270.02413 * 16 15 14 22 22 O 1.22055 * 119.98569 * 359.97438 * 21 16 15 23 23 H 0.96994 * 120.00281 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47029 * 59.99729 * 9 7 2 25 25 H 1.08996 * 109.47208 * 300.00146 * 9 7 2 26 26 H 1.08996 * 109.46663 * 60.00520 * 10 9 7 27 27 H 1.08991 * 109.47372 * 299.99781 * 10 9 7 28 28 H 1.08995 * 109.47605 * 59.99682 * 14 13 11 29 29 H 1.09003 * 109.47371 * 299.99622 * 14 13 11 30 30 H 1.08991 * 109.47264 * 305.00107 * 15 14 13 31 31 H 1.09001 * 109.47142 * 184.99742 * 15 14 13 32 32 H 1.08002 * 119.64669 * 359.97438 * 17 16 15 33 33 H 1.07996 * 120.02410 * 179.69320 * 18 17 16 34 34 H 1.08002 * 120.36615 * 180.31976 * 19 18 17 35 35 H 1.08002 * 120.34395 * 179.74309 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4918 -4.9671 -0.0012 12 8 0.2835 -4.9673 -0.0003 13 8 2.1629 -6.1297 -0.0016 14 6 1.3722 -7.3474 -0.0015 15 6 2.3042 -8.5607 -0.0027 16 7 3.0655 -8.5930 1.2486 17 6 2.5664 -9.2595 2.3209 18 6 3.2487 -9.2985 3.4891 19 6 4.4902 -8.6559 3.5964 20 6 4.9897 -7.9865 2.5181 21 6 4.2522 -7.9607 1.3222 22 8 4.6877 -7.3657 0.3495 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8725 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.7430 -7.3721 -0.8912 29 1 0.7437 -7.3724 0.8887 30 1 2.9923 -8.4895 -0.8449 31 1 1.7135 -9.4725 -0.0921 32 1 1.6124 -9.7597 2.2423 33 1 2.8391 -9.8278 4.3367 34 1 5.0428 -8.6871 4.5238 35 1 5.9424 -7.4818 2.5827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:19 Heat of formation + Delta-G solvation = -94.449843 kcal Electronic energy + Delta-G solvation = -19500.140232 eV Core-core repulsion = 16270.819284 eV Total energy + Delta-G solvation = -3229.320948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42088 -39.84037 -36.90199 -36.39470 -34.77415 -33.54238 -31.21122 -30.34969 -29.72741 -26.11286 -24.66656 -23.70259 -22.42913 -21.71200 -19.78750 -17.87691 -17.49759 -17.20367 -16.48476 -16.42643 -16.02196 -15.81538 -15.06989 -14.68941 -14.43538 -14.26262 -13.64645 -13.21993 -12.99806 -12.51063 -12.24750 -12.17048 -12.13396 -11.91331 -11.70090 -11.14586 -10.92910 -10.61232 -10.44029 -10.27957 -10.00376 -9.90188 -9.87918 -9.50947 -9.14060 -8.34540 -8.07351 -5.98490 -4.02899 0.69232 1.79813 2.46642 2.85493 3.07363 3.34508 3.40338 3.44314 3.59493 4.31026 4.43655 4.48453 4.61722 4.72543 4.88032 4.93840 5.08650 5.16634 5.25785 5.36975 5.45898 5.68545 5.83249 5.92814 6.12705 6.19788 6.28665 6.37205 6.67717 6.96385 6.97520 7.69878 7.76799 8.01308 8.04787 8.29147 8.45007 9.04154 9.60980 11.12674 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.003939 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.837911 B = 7107.448626 C = 7559.094179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.102 4.102 11 C 0.457 3.543 12 O -0.510 6.510 13 O -0.349 6.349 14 C 0.046 3.954 15 C 0.093 3.907 16 N -0.497 5.497 17 C 0.130 3.870 18 C -0.237 4.237 19 C -0.024 4.024 20 C -0.238 4.238 21 C 0.513 3.487 22 O -0.527 6.527 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 -23.122 5.911 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.140 4.140 11 C 0.301 3.699 12 O -0.397 6.397 13 O -0.266 6.266 14 C -0.029 4.029 15 C -0.029 4.029 16 N -0.209 5.209 17 C 0.003 3.997 18 C -0.260 4.260 19 C -0.045 4.045 20 C -0.260 4.260 21 C 0.314 3.686 22 O -0.407 6.407 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.176 0.824 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.251 -22.629 5.219 23.810 hybrid contribution 0.110 0.766 0.185 0.796 sum 5.361 -21.863 5.405 23.150 Atomic orbital electron populations 1.69992 1.06103 1.26712 1.50146 1.25014 0.94848 0.99314 0.95127 0.86537 0.79796 0.83185 0.78150 1.20584 1.21196 1.19755 1.21175 0.93135 0.90639 1.51570 0.92277 1.19015 0.93195 0.89340 0.98764 1.21744 1.00591 0.87537 1.04097 1.24825 0.87835 0.85846 0.71349 1.90622 1.15879 1.87782 1.45461 1.86756 1.40896 1.14313 1.84636 1.23255 0.93322 0.83041 1.03313 1.22108 0.95818 0.97713 0.87244 1.45558 1.19559 1.43587 1.12207 1.21942 0.98246 0.92724 0.86782 1.20609 0.98047 1.09381 0.97968 1.21413 0.93946 0.90978 0.98192 1.22196 1.03362 1.07192 0.93242 1.17141 0.80463 0.80399 0.90585 1.91005 1.68378 1.42904 1.38399 0.92892 0.95634 0.95696 0.89106 0.88880 0.89676 0.91167 0.86975 0.87151 0.82350 0.83992 0.85010 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.27 9.11 -34.44 -0.31 -15.58 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.93 4.26 -27.88 -0.12 0.82 16 10 C -0.10 -2.28 5.75 -27.88 -0.16 -2.44 16 11 C 0.46 9.62 7.96 36.00 0.29 9.91 16 12 O -0.51 -11.93 15.73 -18.75 -0.29 -12.22 16 13 O -0.35 -6.28 8.95 -43.30 -0.39 -6.67 16 14 C 0.05 0.59 5.81 37.16 0.22 0.81 16 15 C 0.09 0.88 5.80 -4.04 -0.02 0.85 16 16 N -0.50 -5.36 2.57 -119.77 -0.31 -5.67 16 17 C 0.13 0.96 10.28 -16.84 -0.17 0.79 16 18 C -0.24 -1.67 10.01 -39.88 -0.40 -2.07 16 19 C -0.02 -0.20 10.10 -39.51 -0.40 -0.60 16 20 C -0.24 -2.75 9.99 -39.38 -0.39 -3.15 16 21 C 0.51 7.30 7.02 -15.44 -0.11 7.19 16 22 O -0.53 -9.64 15.80 -4.02 -0.06 -9.71 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 27 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 28 H 0.09 1.01 8.13 -51.93 -0.42 0.58 16 29 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.11 1.21 7.39 -51.93 -0.38 0.83 16 31 H 0.11 0.52 8.01 -51.93 -0.42 0.10 16 32 H 0.16 0.56 8.04 -52.49 -0.42 0.13 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -37.48 311.16 -6.90 -44.38 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.56 Total: -3.08 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.68 Total: -1.85 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.43 Total: -32.49 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.75 Total: -28.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.48 -6.90 -44.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.071 kcal (2) G-P(sol) polarization free energy of solvation -37.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds