Wall clock time and date at job start Mon Mar 30 2020 00:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47120 * 2 1 4 4 C 1.53004 * 109.47347 * 240.00561 * 2 1 3 5 5 O 1.42900 * 109.47421 * 120.00039 * 2 1 3 6 6 C 1.35714 * 116.99693 * 62.86388 * 5 2 1 7 7 C 1.39253 * 120.37387 * 175.77422 * 6 5 2 8 8 C 1.38288 * 118.45422 * 180.02562 * 7 6 5 9 9 C 1.39571 * 119.12802 * 359.97438 * 8 7 6 10 10 C 1.47731 * 119.66792 * 179.97438 * 9 8 7 11 11 O 1.21503 * 119.99871 * 0.02562 * 10 9 8 12 12 O 1.34725 * 120.00159 * 180.02562 * 10 9 8 13 13 C 1.34827 * 117.00039 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00464 * 359.97438 * 13 12 10 15 15 C 1.38837 * 119.99967 * 179.97438 * 13 12 10 16 16 N 1.31396 * 119.99940 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00159 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46770 * 359.97438 * 17 15 13 19 19 H 1.48489 * 109.47202 * 119.99767 * 17 15 13 20 20 H 1.48502 * 109.46688 * 240.00081 * 17 15 13 21 21 N 1.32872 * 120.66520 * 359.97438 * 9 8 7 22 22 C 1.31360 * 121.68653 * 0.03709 * 21 9 8 23 23 H 1.08995 * 109.47298 * 317.56493 * 1 2 3 24 24 H 1.09002 * 109.47193 * 77.57037 * 1 2 3 25 25 H 1.09008 * 109.46627 * 197.57066 * 1 2 3 26 26 H 1.09000 * 109.47314 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47279 * 300.00411 * 3 2 1 28 28 H 1.09000 * 109.46708 * 60.00204 * 3 2 1 29 29 H 1.09001 * 109.46802 * 288.43395 * 4 2 1 30 30 H 1.08993 * 109.47309 * 48.43628 * 4 2 1 31 31 H 1.08995 * 109.47237 * 168.43767 * 4 2 1 32 32 H 1.07997 * 120.77584 * 0.02562 * 7 6 5 33 33 H 1.08005 * 120.44099 * 179.72906 * 8 7 6 34 34 H 0.97000 * 119.99896 * 179.97438 * 16 15 13 35 35 H 1.07998 * 119.59026 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.6917 -1.9880 1.2909 7 6 2.1926 -2.7344 2.3544 8 6 1.8470 -4.0706 2.4421 9 6 1.0130 -4.6219 1.4682 10 6 0.6367 -6.0481 1.5499 11 8 1.0526 -6.7349 2.4619 12 8 -0.1676 -6.5873 0.6132 13 6 -0.4727 -7.8938 0.7468 14 1 -0.0758 -8.4589 1.5772 15 6 -1.2972 -8.5128 -0.1830 16 7 -1.7806 -7.8253 -1.1930 17 14 -1.7205 -10.3228 0.0025 18 1 -1.0552 -10.8650 1.2145 19 1 -3.1915 -10.4761 0.1343 20 1 -1.2505 -11.0661 -1.1941 21 7 0.5539 -3.8768 0.4683 22 6 0.8638 -2.6052 0.3567 23 1 -0.3633 0.7584 0.6934 24 1 -0.3634 0.2212 -1.0036 25 1 -0.3633 -0.9798 0.3103 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.8547 -1.7909 -1.1524 30 1 1.5184 -0.3401 -2.1272 31 1 3.1103 -0.5462 -1.3583 32 1 2.8359 -2.2805 3.0936 33 1 2.2208 -4.6805 3.2512 34 1 -2.3563 -8.2578 -1.8429 35 1 0.4719 -2.0314 -0.4701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814517759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:31 Heat of formation + Delta-G solvation = -86.486466 kcal Electronic energy + Delta-G solvation = -19776.616813 eV Core-core repulsion = 16547.641182 eV Total energy + Delta-G solvation = -3228.975630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.33243 -41.02924 -39.55914 -37.28091 -35.46608 -34.36507 -33.22224 -32.00392 -28.60416 -28.42978 -27.68604 -25.48762 -24.73239 -22.51579 -21.60272 -19.93392 -19.20575 -18.42097 -18.28557 -17.12564 -16.82171 -16.41320 -16.19562 -16.16192 -15.42433 -15.29148 -14.98742 -14.37159 -14.18580 -14.06442 -13.82321 -13.60983 -13.13174 -13.12130 -13.00219 -12.69083 -12.64469 -12.41178 -12.19401 -12.01298 -11.84720 -11.66496 -11.32517 -10.89633 -10.73298 -10.52579 -9.53202 -8.57619 -6.35727 -0.44895 0.12238 1.32627 1.33306 1.53572 1.64806 1.93229 2.08156 2.57487 2.67727 3.01492 3.31401 3.40309 3.67521 3.75475 3.87246 3.90662 4.06414 4.33057 4.50422 4.51042 4.54394 4.73479 4.73973 4.82244 4.86483 4.91659 5.00053 5.12574 5.14495 5.24161 5.30552 5.35956 5.76643 6.14662 6.46123 6.78521 6.85356 7.72464 8.63052 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.034343 B = 0.004336 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.105183 B = 6456.549964 C = 7080.200795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.095 3.905 3 C -0.131 4.131 4 C -0.205 4.205 5 O -0.295 6.295 6 C 0.114 3.886 7 C -0.112 4.112 8 C -0.069 4.069 9 C 0.042 3.958 10 C 0.440 3.560 11 O -0.574 6.574 12 O -0.218 6.218 13 C -0.426 4.426 14 H 0.087 0.913 15 C -0.004 4.004 16 N -0.894 5.894 17 Si 1.025 2.975 18 H -0.261 1.261 19 H -0.257 1.257 20 H -0.257 1.257 21 N -0.440 5.440 22 C 0.003 3.997 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.188 0.812 33 H 0.162 0.838 34 H 0.281 0.719 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 19.273 0.701 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.059 3.941 3 C -0.188 4.188 4 C -0.262 4.262 5 O -0.207 6.207 6 C 0.064 3.936 7 C -0.138 4.138 8 C -0.089 4.089 9 C -0.093 4.093 10 C 0.289 3.711 11 O -0.473 6.473 12 O -0.123 6.123 13 C -0.501 4.501 14 H 0.105 0.895 15 C -0.205 4.205 16 N -0.530 5.530 17 Si 0.842 3.158 18 H -0.185 1.185 19 H -0.182 1.182 20 H -0.182 1.182 21 N -0.153 5.153 22 C -0.159 4.159 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.206 0.794 33 H 0.179 0.821 34 H 0.091 0.909 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.252 18.802 0.246 19.816 hybrid contribution 0.084 -0.691 0.427 0.817 sum 6.336 18.112 0.673 19.200 Atomic orbital electron populations 1.22921 0.94203 1.03527 1.05300 1.22294 0.94538 0.94359 0.82954 1.21836 1.02395 0.90142 1.04425 1.22958 1.03650 1.01369 0.98196 1.86126 1.72178 1.17672 1.44721 1.20281 0.93265 0.85265 0.94756 1.21150 1.02264 0.91457 0.98880 1.21990 0.93854 0.95514 0.97557 1.20041 1.02149 0.91119 0.95986 1.21222 0.79871 0.88381 0.81632 1.90574 1.57141 1.63131 1.36466 1.84032 1.55311 1.27198 1.45805 1.21706 1.32163 0.82899 1.13364 0.89545 1.26733 0.94260 1.06019 0.93500 1.70116 1.30763 1.39294 1.12812 0.84489 0.79000 0.72912 0.79363 1.18518 1.18158 1.18155 1.67607 1.19714 1.07006 1.20966 1.24202 0.99402 0.90804 1.01510 0.90165 0.88439 0.92369 0.91141 0.87995 0.91040 0.92285 0.88251 0.90556 0.79440 0.82051 0.90947 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 8.12 71.98 0.58 -2.72 16 2 C 0.10 1.57 1.11 -10.79 -0.01 1.56 16 3 C -0.13 -1.38 8.74 71.98 0.63 -0.75 16 4 C -0.20 -3.43 8.08 71.98 0.58 -2.85 16 5 O -0.29 -6.48 9.79 -90.35 -0.88 -7.36 16 6 C 0.11 3.11 6.09 22.76 0.14 3.25 16 7 C -0.11 -3.00 10.12 22.53 0.23 -2.77 16 8 C -0.07 -2.41 9.62 22.60 0.22 -2.19 16 9 C 0.04 1.92 6.74 41.82 0.28 2.20 16 10 C 0.44 25.23 7.88 70.33 0.55 25.78 16 11 O -0.57 -33.76 15.56 19.83 0.31 -33.45 16 12 O -0.22 -14.16 9.55 11.68 0.11 -14.05 16 13 C -0.43 -27.39 9.65 67.96 0.66 -26.73 16 14 H 0.09 5.55 6.86 -2.91 -0.02 5.53 16 15 C 0.00 -0.23 5.50 84.90 0.47 0.24 16 16 N -0.89 -55.16 13.67 21.64 0.30 -54.86 16 17 Si 1.02 44.63 29.55 68.60 2.03 46.66 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 N -0.44 -19.50 10.11 -184.58 -1.87 -21.37 16 22 C 0.00 0.09 6.93 85.01 0.59 0.68 16 23 H 0.08 1.14 8.01 -2.39 -0.02 1.12 16 24 H 0.10 1.20 7.85 -2.39 -0.02 1.18 16 25 H 0.06 1.27 4.73 -2.38 -0.01 1.26 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.33 4.48 -2.39 -0.01 1.32 16 30 H 0.10 1.22 7.90 -2.39 -0.02 1.21 16 31 H 0.08 1.16 8.10 -2.39 -0.02 1.15 16 32 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.16 5.26 7.63 -2.91 -0.02 5.24 16 34 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.20 5.46 3.60 -2.91 -0.01 5.45 16 Total: -1.00 -80.93 298.07 6.03 -74.91 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.12 Total: 13.84 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 4.91 Total: -4.30 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.57 Total: -76.23 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.46 Total: -54.87 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -80.93 6.03 -74.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814517759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.581 kcal (2) G-P(sol) polarization free energy of solvation -80.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds