Wall clock time and date at job start Mon Mar 30 2020 00:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38632 * 119.54680 * 2 1 4 4 C 1.38587 * 119.35656 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.25170 * 4 3 2 6 6 C 1.39304 * 119.05973 * 359.48120 * 5 4 3 7 7 C 1.48068 * 119.72770 * 180.27421 * 6 5 4 8 8 O 1.21435 * 120.00004 * 0.25283 * 7 6 5 9 9 O 1.34680 * 120.00057 * 180.25199 * 7 6 5 10 10 C 1.45200 * 116.99654 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47045 * 179.97438 * 10 9 7 12 12 O 1.42902 * 109.46836 * 65.00193 * 11 10 9 13 13 C 1.42899 * 114.00350 * 180.02562 * 12 11 10 14 14 C 1.50690 * 109.47431 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99951 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00426 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99659 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00446 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47401 * 60.00140 * 18 16 14 20 20 H 1.48506 * 109.46948 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46996 * 299.99627 * 18 16 14 22 22 N 1.31479 * 119.55037 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46987 * 90.00305 * 1 2 3 24 24 H 1.08997 * 109.46864 * 210.00609 * 1 2 3 25 25 H 1.08994 * 109.47018 * 330.00053 * 1 2 3 26 26 H 1.07996 * 120.32139 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.46741 * 179.75133 * 5 4 3 29 29 H 1.08996 * 109.47518 * 300.00091 * 10 9 7 30 30 H 1.09005 * 109.47285 * 60.00823 * 10 9 7 31 31 H 1.08993 * 109.47675 * 185.00150 * 11 10 9 32 32 H 1.08997 * 109.47051 * 305.01172 * 11 10 9 33 33 H 1.09001 * 109.46670 * 300.00765 * 13 12 11 34 34 H 1.09001 * 109.46803 * 59.99801 * 13 12 11 35 35 H 0.96995 * 120.00163 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2060 0.0000 4 6 3.5765 1.2014 0.0005 5 6 4.2337 -0.0192 -0.0043 6 6 3.4823 -1.1922 0.0015 7 6 4.1690 -2.5040 0.0027 8 8 5.3823 -2.5542 0.0031 9 8 3.4480 -3.6416 0.0031 10 6 4.1879 -4.8909 0.0037 11 6 3.2066 -6.0648 0.0048 12 8 2.4638 -6.0658 -1.2160 13 6 1.5131 -7.1279 -1.3171 14 6 0.7918 -7.0326 -2.6367 15 1 1.0354 -6.2404 -3.3292 16 6 -0.1791 -7.9566 -2.9601 17 7 -0.4753 -8.9216 -2.1170 18 14 -1.0727 -7.8389 -4.5962 19 1 -0.0911 -7.9469 -5.7053 20 1 -2.0607 -8.9426 -4.7011 21 1 -1.7762 -6.5341 -4.6832 22 7 2.1554 -1.1438 0.0005 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6485 2.1401 -0.0004 27 1 4.1318 2.1278 0.0001 28 1 5.3129 -0.0601 -0.0081 29 1 4.8152 -4.9421 -0.8862 30 1 4.8151 -4.9414 0.8938 31 1 3.7589 -7.0001 0.0948 32 1 2.5215 -5.9649 0.8467 33 1 2.0301 -8.0854 -1.2542 34 1 0.7930 -7.0496 -0.5025 35 1 -1.1586 -9.5714 -2.3443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815179571.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:15 Heat of formation + Delta-G solvation = -100.262776 kcal Electronic energy + Delta-G solvation = -19005.729211 eV Core-core repulsion = 15776.156195 eV Total energy + Delta-G solvation = -3229.573016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88688 -39.66412 -37.02613 -35.99496 -33.27424 -32.88089 -32.67369 -30.05370 -28.02719 -26.92231 -25.30995 -22.78663 -22.34864 -21.97518 -20.99983 -18.26959 -17.06782 -16.50688 -16.46689 -16.21524 -16.08695 -15.37090 -14.70696 -14.53510 -14.42278 -14.21894 -13.56575 -13.36697 -13.01714 -12.72573 -12.44060 -12.37336 -12.15687 -11.91088 -11.37754 -10.92839 -10.86372 -10.75200 -10.61578 -10.33951 -10.21186 -10.02272 -9.70036 -9.27374 -9.09405 -8.82197 -8.16046 -6.07777 -4.09053 0.32750 0.95447 2.37043 2.63303 3.35180 3.37181 3.41697 3.59103 3.90222 4.36315 4.40056 4.59612 4.66785 4.73625 4.78431 5.10256 5.25281 5.28681 5.29209 5.34832 5.48210 5.49959 5.71874 5.75881 5.89823 5.91801 5.98432 6.13144 6.31660 6.51456 7.10484 7.45136 7.51259 7.82388 7.88981 8.17413 8.58073 9.03454 9.55343 11.03879 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.004191 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.808991 B = 6678.775586 C = 7732.774528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.127 3.873 3 C -0.145 4.145 4 C -0.082 4.082 5 C -0.117 4.117 6 C 0.102 3.898 7 C 0.521 3.479 8 O -0.508 6.508 9 O -0.314 6.314 10 C 0.071 3.929 11 C 0.063 3.937 12 O -0.390 6.390 13 C 0.195 3.805 14 C -0.514 4.514 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.900 5.900 18 Si 0.908 3.092 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.429 5.429 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 20.096 7.027 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.014 4.014 3 C -0.165 4.165 4 C -0.108 4.108 5 C -0.137 4.137 6 C -0.035 4.035 7 C 0.364 3.636 8 O -0.397 6.397 9 O -0.228 6.228 10 C -0.003 4.003 11 C -0.015 4.015 12 O -0.310 6.310 13 C 0.121 3.879 14 C -0.552 4.552 15 H 0.084 0.916 16 C -0.144 4.144 17 N -0.539 5.539 18 Si 0.736 3.264 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 N -0.141 5.141 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.168 0.832 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.258 19.176 6.900 21.318 hybrid contribution 0.098 0.410 -0.596 0.730 sum 6.356 19.585 6.303 21.534 Atomic orbital electron populations 1.20781 0.87928 1.03921 1.03792 1.21491 0.97631 0.87596 0.94638 1.22302 0.95048 0.99604 0.99553 1.21585 0.94432 0.98082 0.96653 1.22081 1.02205 0.91537 0.97864 1.20108 0.89966 0.91158 1.02228 1.20792 0.85115 0.84878 0.72829 1.90819 1.14339 1.88028 1.46498 1.86786 1.39971 1.14071 1.81931 1.23318 0.94345 0.79981 1.02621 1.22305 0.94280 0.94277 0.90634 1.87927 1.54351 1.53936 1.34758 1.20223 0.86020 0.84155 0.97529 1.21018 1.19394 1.12807 1.01987 0.91582 1.24938 0.96724 0.94953 0.97824 1.69955 1.32467 1.15489 1.35998 0.86388 0.79221 0.77679 0.83152 1.20039 1.21151 1.19980 1.67590 1.08183 1.29789 1.08511 0.89812 0.89699 0.90524 0.83998 0.83718 0.83235 0.90319 0.90269 0.91875 0.93098 0.97657 0.97460 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.17 36.00 0.37 -0.60 16 2 C 0.13 1.46 6.78 -82.60 -0.56 0.90 16 3 C -0.15 -1.22 9.75 -39.31 -0.38 -1.60 16 4 C -0.08 -0.67 10.17 -39.31 -0.40 -1.07 16 5 C -0.12 -1.29 9.63 -39.04 -0.38 -1.67 16 6 C 0.10 1.51 6.75 -83.03 -0.56 0.95 16 7 C 0.52 8.83 7.95 34.76 0.28 9.11 16 8 O -0.51 -8.78 16.11 -19.22 -0.31 -9.09 16 9 O -0.31 -5.92 10.01 -43.22 -0.43 -6.35 16 10 C 0.07 1.20 5.85 37.16 0.22 1.42 16 11 C 0.06 1.21 6.33 37.16 0.24 1.44 16 12 O -0.39 -9.88 10.30 -38.80 -0.40 -10.28 16 13 C 0.19 5.49 5.69 36.00 0.20 5.70 16 14 C -0.51 -15.55 9.43 -34.44 -0.32 -15.88 16 15 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 18 Si 0.91 22.23 29.54 -169.99 -5.02 17.21 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 N -0.43 -6.59 10.03 -6.07 -0.06 -6.65 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.45 8.08 -51.93 -0.42 0.04 16 26 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 27 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 28 H 0.15 1.45 7.64 -52.49 -0.40 1.05 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -35.33 317.62 -6.69 -42.02 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -4.59 Total: -5.39 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.40 Total: 0.28 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.68 Total: -33.19 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.14 Total: -25.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.33 -6.69 -42.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815179571.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.238 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds