Wall clock time and date at job start Mon Mar 30 2020 00:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31675 * 119.72156 * 2 1 4 4 C 1.31934 * 121.88365 * 179.97438 * 3 2 1 5 5 C 1.38356 * 121.09490 * 359.97438 * 4 3 2 6 6 C 1.38348 * 119.30511 * 0.25346 * 5 4 3 7 7 C 1.39578 * 119.71337 * 179.97438 * 2 1 3 8 8 C 1.47720 * 120.56763 * 0.02562 * 7 2 1 9 9 O 1.21466 * 120.00089 * 5.92489 * 8 7 2 10 10 O 1.34706 * 119.99822 * 185.92945 * 8 7 2 11 11 C 1.45196 * 117.00023 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47125 * 180.02562 * 11 10 8 13 13 O 1.42896 * 109.47272 * 64.99912 * 12 11 10 14 14 C 1.42906 * 113.99947 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46732 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00472 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99509 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00187 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00206 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47143 * 89.99706 * 19 17 15 21 21 H 1.48495 * 109.47487 * 209.99654 * 19 17 15 22 22 H 1.48495 * 109.47010 * 330.00326 * 19 17 15 23 23 H 1.08998 * 109.47006 * 96.56352 * 1 2 3 24 24 H 1.08993 * 109.47480 * 216.56426 * 1 2 3 25 25 H 1.08998 * 109.46793 * 336.56787 * 1 2 3 26 26 H 1.08003 * 119.45567 * 180.02562 * 4 3 2 27 27 H 1.07994 * 120.35406 * 179.97438 * 5 4 3 28 28 H 1.08003 * 120.86235 * 179.72278 * 6 5 4 29 29 H 1.09004 * 109.46874 * 299.99755 * 11 10 8 30 30 H 1.08997 * 109.47442 * 59.99456 * 11 10 8 31 31 H 1.09005 * 109.46942 * 185.00203 * 12 11 10 32 32 H 1.09001 * 109.47009 * 304.99512 * 12 11 10 33 33 H 1.09005 * 109.46752 * 300.00085 * 14 13 12 34 34 H 1.08995 * 109.46784 * 59.99716 * 14 13 12 35 35 H 0.96993 * 120.00216 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1435 0.0000 4 6 3.4783 1.1933 0.0005 5 6 4.2370 0.0363 0.0016 6 6 3.5995 -1.1915 -0.0032 7 6 2.1989 -1.2123 0.0005 8 6 1.4666 -2.4952 0.0005 9 8 0.2569 -2.5039 -0.1085 10 8 2.1404 -3.6553 0.1216 11 6 1.3560 -4.8771 0.1131 12 6 2.2874 -6.0821 0.2606 13 8 2.9151 -6.0447 1.5437 14 6 3.8101 -7.1324 1.7848 15 6 4.4113 -6.9929 3.1596 16 1 4.1377 -6.1570 3.7864 17 6 5.3107 -7.9324 3.6172 18 7 5.8358 -7.8105 4.8168 19 14 5.7834 -9.3786 2.5334 20 1 6.9633 -9.0141 1.7084 21 1 6.1176 -10.5477 3.3857 22 1 4.6453 -9.7234 1.6440 23 1 -0.3633 -0.1175 -1.0209 24 1 -0.3634 -0.8253 0.6122 25 1 -0.3633 0.9429 0.4087 26 1 3.9735 2.1531 0.0009 27 1 5.3156 0.0910 0.0016 28 1 4.1671 -2.1104 -0.0070 29 1 0.6494 -4.8609 0.9429 30 1 0.8103 -4.9521 -0.8274 31 1 1.7097 -7.0015 0.1653 32 1 3.0495 -6.0496 -0.5180 33 1 3.2637 -8.0735 1.7213 34 1 4.6039 -7.1221 1.0378 35 1 6.4688 -8.4713 5.1386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815208741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:18 Heat of formation + Delta-G solvation = -117.160113 kcal Electronic energy + Delta-G solvation = -19171.103078 eV Core-core repulsion = 15940.797339 eV Total energy + Delta-G solvation = -3230.305739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.01619 -40.67612 -38.81793 -37.53924 -34.90470 -34.08931 -33.65434 -31.80608 -29.67340 -28.84463 -25.99559 -24.14765 -23.88469 -23.10500 -22.29741 -19.14039 -19.11592 -18.17033 -17.96075 -17.41390 -17.14391 -16.97940 -16.45967 -16.31036 -15.51422 -15.36418 -14.77854 -14.56415 -14.30677 -14.18649 -13.91416 -13.56966 -13.40701 -13.36638 -13.01325 -12.95610 -12.62013 -12.31242 -11.87025 -11.74533 -11.42022 -11.36347 -11.04208 -10.93839 -10.64770 -10.41382 -10.11988 -8.37467 -6.46294 -0.57407 0.11724 1.34650 1.36807 1.38052 1.48767 1.52918 2.29879 2.66763 2.94170 2.95659 3.21072 3.46136 3.65125 3.82911 3.90710 3.97587 4.11643 4.32396 4.39926 4.49416 4.52257 4.58250 4.67078 4.67801 4.71329 4.97628 4.99230 5.07000 5.08700 5.34630 5.42196 5.58393 5.90426 6.56394 6.58513 6.70492 6.77778 7.18221 8.79879 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.025812 B = 0.003886 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.520652 B = 7202.742619 C = 7862.161464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.181 3.819 3 N -0.510 5.510 4 C 0.138 3.862 5 C -0.183 4.183 6 C -0.022 4.022 7 C -0.203 4.203 8 C 0.511 3.489 9 O -0.517 6.517 10 O -0.353 6.353 11 C 0.075 3.925 12 C 0.050 3.950 13 O -0.408 6.408 14 C 0.179 3.821 15 C -0.550 4.550 16 H 0.026 0.974 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.958 3.042 20 H -0.258 1.258 21 H -0.275 1.275 22 H -0.241 1.241 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.202 0.798 27 H 0.178 0.822 28 H 0.152 0.848 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 13.233 -15.690 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.043 3.957 3 N -0.220 5.220 4 C -0.019 4.019 5 C -0.202 4.202 6 C -0.048 4.048 7 C -0.207 4.207 8 C 0.357 3.643 9 O -0.408 6.408 10 O -0.269 6.269 11 C 0.002 3.998 12 C -0.027 4.027 13 O -0.328 6.328 14 C 0.103 3.897 15 C -0.587 4.587 16 H 0.045 0.955 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.164 1.164 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.219 0.781 27 H 0.196 0.804 28 H 0.170 0.830 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.144 14.024 -15.452 21.752 hybrid contribution 0.752 -1.645 0.121 1.813 sum -5.392 12.378 -15.331 20.429 Atomic orbital electron populations 1.21029 0.87130 1.04058 1.04254 1.21697 0.98199 0.86514 0.89272 1.67776 1.11484 1.27570 1.15209 1.23772 0.88623 1.00742 0.88747 1.22554 1.03854 0.91690 1.02148 1.22227 0.92470 1.00963 0.89140 1.20064 0.95469 0.91265 1.13859 1.21159 0.85827 0.84767 0.72581 1.90753 1.15201 1.87958 1.46937 1.86611 1.42086 1.15265 1.82957 1.23309 0.93153 0.79485 1.03892 1.22774 0.96590 0.96636 0.86660 1.87926 1.61201 1.49338 1.34348 1.20364 0.88460 0.85979 0.94877 1.21180 1.26244 1.10708 1.00592 0.95533 1.25878 0.94739 1.01192 0.96711 1.70038 1.30851 1.37720 1.19679 0.85575 0.80164 0.77519 0.78872 1.18266 1.20039 1.16441 0.89245 0.89575 0.89767 0.78144 0.80431 0.82994 0.91162 0.86771 0.88935 0.91406 0.96383 0.96606 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 8.88 71.24 0.63 -1.82 16 2 C 0.18 4.55 6.82 42.91 0.29 4.84 16 3 N -0.51 -11.58 10.26 -182.80 -1.88 -13.45 16 4 C 0.14 2.26 11.17 84.71 0.95 3.20 16 5 C -0.18 -2.99 10.10 22.32 0.23 -2.77 16 6 C -0.02 -0.51 9.74 22.74 0.22 -0.29 16 7 C -0.20 -5.43 5.89 -20.00 -0.12 -5.55 16 8 C 0.51 15.45 7.83 70.33 0.55 16.00 16 9 O -0.52 -16.28 13.16 19.95 0.26 -16.02 16 10 O -0.35 -11.28 9.54 -53.49 -0.51 -11.79 16 11 C 0.07 2.13 5.85 71.98 0.42 2.55 16 12 C 0.05 1.56 6.33 71.98 0.46 2.02 16 13 O -0.41 -18.62 10.30 -145.57 -1.50 -20.12 16 14 C 0.18 8.71 4.76 71.24 0.34 9.05 16 15 C -0.55 -33.29 9.99 25.60 0.26 -33.03 16 16 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 17 C 0.01 0.74 5.47 84.65 0.46 1.21 16 18 N -0.94 -59.10 13.96 21.45 0.30 -58.81 16 19 Si 0.96 42.23 27.47 68.60 1.88 44.11 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 23 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.09 2.22 5.84 -2.39 -0.01 2.21 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 27 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 28 H 0.15 3.42 7.72 -2.91 -0.02 3.39 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.47 16 31 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.02 0.84 7.20 -2.38 -0.02 0.82 16 34 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.54 307.92 4.28 -71.26 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.04 Total: 9.40 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 4.69 Total: -4.59 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -1.58 Total: -72.26 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.75 Total: -47.93 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Total: -75.54 4.28 -71.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815208741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.899 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds