Wall clock time and date at job start Mon Mar 30 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.50523 * 2 1 4 4 N 1.31801 * 120.90267 * 180.02562 * 3 2 1 5 5 C 1.31823 * 122.05955 * 359.97438 * 4 3 2 6 6 C 1.38128 * 120.89850 * 0.02562 * 5 4 3 7 7 C 1.39845 * 120.50207 * 180.02562 * 2 1 3 8 8 C 1.48052 * 120.92287 * 359.97438 * 7 2 1 9 9 O 1.21427 * 120.00195 * 353.92229 * 8 7 2 10 10 O 1.34674 * 119.99464 * 173.92778 * 8 7 2 11 11 C 1.45199 * 116.99646 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47006 * 179.97438 * 11 10 8 13 13 O 1.42910 * 109.47145 * 64.99798 * 12 11 10 14 14 C 1.42892 * 114.00191 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47318 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99705 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99922 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00212 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46998 * 89.99927 * 19 17 15 21 21 H 1.48496 * 109.47392 * 210.00278 * 19 17 15 22 22 H 1.48500 * 109.46943 * 330.00255 * 19 17 15 23 23 H 1.08999 * 109.46653 * 263.65574 * 1 2 3 24 24 H 1.09000 * 109.46943 * 23.65251 * 1 2 3 25 25 H 1.08993 * 109.47246 * 143.65906 * 1 2 3 26 26 H 1.08008 * 119.54887 * 0.04703 * 3 2 1 27 27 H 1.07993 * 119.54932 * 179.97438 * 5 4 3 28 28 H 1.08007 * 120.49882 * 179.97438 * 6 5 4 29 29 H 1.08994 * 109.47106 * 299.99280 * 11 10 8 30 30 H 1.08996 * 109.47217 * 60.00173 * 11 10 8 31 31 H 1.08996 * 109.47287 * 184.99506 * 12 11 10 32 32 H 1.08996 * 109.47393 * 305.00053 * 12 11 10 33 33 H 1.08999 * 109.47268 * 300.00161 * 14 13 12 34 34 H 1.09000 * 109.47209 * 59.99926 * 14 13 12 35 35 H 0.97003 * 119.99772 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5263 1.1995 -0.0005 5 6 4.2338 0.0872 -0.0005 6 6 3.6143 -1.1474 -0.0006 7 6 2.2168 -1.2049 -0.0005 8 6 1.5087 -2.5051 -0.0006 9 8 0.3000 -2.5382 0.1112 10 8 2.2052 -3.6511 -0.1245 11 6 1.4453 -4.8884 -0.1158 12 6 2.4002 -6.0743 -0.2667 13 8 3.2541 -6.1469 0.8769 14 6 4.1893 -7.2265 0.8364 15 6 5.0328 -7.2075 2.0850 16 1 4.8712 -6.4468 2.8344 17 6 6.0117 -8.1607 2.2703 18 7 6.7482 -8.1437 3.3598 19 14 6.2918 -9.4761 0.9739 20 1 7.2946 -8.9955 -0.0103 21 1 6.7906 -10.7142 1.6246 22 1 5.0127 -9.7642 0.2767 23 1 -0.3632 -0.1136 1.0214 24 1 -0.3633 0.9413 -0.4123 25 1 -0.3633 -0.8277 -0.6089 26 1 1.6692 2.1263 0.0008 27 1 5.3123 0.1420 -0.0014 28 1 4.2003 -2.0547 -0.0010 29 1 0.9035 -4.9754 0.8259 30 1 0.7367 -4.8854 -0.9440 31 1 1.8245 -6.9961 -0.3494 32 1 3.0050 -5.9419 -1.1638 33 1 3.6504 -8.1721 0.7769 34 1 4.8312 -7.1185 -0.0379 35 1 7.4366 -8.8146 3.4903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:08 Heat of formation + Delta-G solvation = -117.571678 kcal Electronic energy + Delta-G solvation = -19153.535753 eV Core-core repulsion = 15923.212167 eV Total energy + Delta-G solvation = -3230.323586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03939 -40.72177 -38.84438 -37.61126 -34.90446 -34.56447 -33.38175 -31.78746 -29.64494 -28.49888 -26.16942 -24.17790 -23.91709 -23.14698 -22.27018 -19.40740 -19.12660 -18.27706 -17.99107 -17.30924 -17.10746 -16.45788 -16.43597 -16.22062 -15.93721 -15.35839 -14.90567 -14.59273 -14.40463 -14.32924 -13.97557 -13.65342 -13.51554 -13.36096 -13.00374 -12.63621 -12.62838 -12.31881 -11.88682 -11.77978 -11.68401 -11.36901 -11.02951 -10.94099 -10.58162 -10.42053 -10.01079 -8.37565 -6.46367 -0.58112 0.00545 1.34530 1.36804 1.37876 1.43496 1.48464 2.29697 2.68504 2.92961 2.95448 3.33967 3.44361 3.71317 3.71553 3.85734 3.88668 4.09258 4.33146 4.38856 4.44424 4.51396 4.59873 4.66320 4.72562 4.74438 4.81382 4.98767 5.04167 5.12158 5.39800 5.42006 5.56224 5.89995 6.49994 6.57736 6.69651 6.80556 7.18108 8.79708 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.003883 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.463069 B = 7208.769780 C = 7935.291600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 C 0.093 3.907 4 N -0.474 5.474 5 C 0.082 3.918 6 C -0.116 4.116 7 C -0.104 4.104 8 C 0.506 3.494 9 O -0.511 6.511 10 O -0.351 6.351 11 C 0.075 3.925 12 C 0.049 3.951 13 O -0.408 6.408 14 C 0.179 3.821 15 C -0.549 4.549 16 H 0.027 0.973 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.241 1.241 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.198 0.802 27 H 0.188 0.812 28 H 0.151 0.849 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 14.402 -12.754 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.064 4.064 4 N -0.183 5.183 5 C -0.073 4.073 6 C -0.136 4.136 7 C -0.113 4.113 8 C 0.352 3.648 9 O -0.402 6.402 10 O -0.267 6.267 11 C 0.002 3.998 12 C -0.027 4.027 13 O -0.328 6.328 14 C 0.103 3.897 15 C -0.587 4.587 16 H 0.045 0.955 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.778 3.222 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.164 1.164 23 H 0.096 0.904 24 H 0.117 0.883 25 H 0.095 0.905 26 H 0.215 0.785 27 H 0.205 0.795 28 H 0.168 0.832 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.184 15.164 -12.471 22.595 hybrid contribution -0.016 -1.780 0.033 1.780 sum -11.200 13.385 -12.438 21.431 Atomic orbital electron populations 1.21010 0.87827 1.04612 1.03679 1.21380 0.99271 0.91899 0.95426 1.23248 0.89455 0.98007 0.95727 1.67624 1.09043 1.32166 1.09504 1.23178 1.01999 0.86385 0.95774 1.22693 0.93592 1.01507 0.95850 1.19555 0.94573 0.90536 1.06650 1.21341 0.85606 0.85090 0.72801 1.90760 1.15194 1.88023 1.46178 1.86619 1.42146 1.15330 1.82654 1.23334 0.93467 0.78911 1.04120 1.22777 0.93248 0.96746 0.89932 1.87922 1.50201 1.52401 1.42260 1.20359 0.87629 0.85954 0.95729 1.21174 1.18156 1.14405 1.04963 0.95478 1.25875 0.94265 1.00033 0.98362 1.70042 1.22486 1.36963 1.28762 0.85579 0.80289 0.77648 0.78641 1.18323 1.20033 1.16426 0.90371 0.88277 0.90537 0.78543 0.79477 0.83174 0.91046 0.86678 0.88856 0.91446 0.96364 0.96650 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 8.84 71.24 0.63 -1.34 16 2 C -0.08 -1.61 5.93 -19.49 -0.12 -1.73 16 3 C 0.09 1.68 10.83 84.68 0.92 2.60 16 4 N -0.47 -10.17 10.33 -196.01 -2.03 -12.20 16 5 C 0.08 1.71 11.17 84.67 0.95 2.66 16 6 C -0.12 -2.79 9.71 22.64 0.22 -2.57 16 7 C -0.10 -2.67 5.91 -19.89 -0.12 -2.79 16 8 C 0.51 14.84 7.86 70.43 0.55 15.40 16 9 O -0.51 -15.51 13.32 20.07 0.27 -15.25 16 10 O -0.35 -11.09 9.57 -53.18 -0.51 -11.60 16 11 C 0.07 2.10 5.85 71.98 0.42 2.52 16 12 C 0.05 1.54 6.33 71.98 0.46 1.99 16 13 O -0.41 -18.52 10.30 -145.57 -1.50 -20.02 16 14 C 0.18 8.70 4.76 71.23 0.34 9.04 16 15 C -0.55 -33.23 9.99 25.60 0.26 -32.98 16 16 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 17 C 0.01 0.74 5.47 84.65 0.46 1.20 16 18 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 19 Si 0.96 42.30 27.47 68.60 1.88 44.19 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.03 8.06 -2.39 -0.02 1.02 16 25 H 0.08 1.61 5.95 -2.39 -0.01 1.59 16 26 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 27 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.15 3.70 7.73 -2.91 -0.02 3.68 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 34 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -74.68 308.04 4.42 -70.26 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.04 Total: 9.45 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.97 Total: -6.01 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.73 Total: -71.01 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.74 Total: -46.87 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.88 Total: 44.19 kcal Total: -74.68 4.42 -70.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.316 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds