Wall clock time and date at job start Mon Mar 30 2020 00:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.54921 * 2 1 4 4 C 1.39841 * 118.99652 * 180.02562 * 3 2 1 5 5 C 1.48051 * 120.92775 * 180.02562 * 4 3 2 6 6 O 1.21427 * 120.00133 * 359.97438 * 5 4 3 7 7 O 1.34679 * 119.99774 * 179.97438 * 5 4 3 8 8 C 1.45198 * 116.99756 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46922 * 180.02562 * 8 7 5 10 10 O 1.42894 * 109.47213 * 64.99981 * 9 8 7 11 11 C 1.42905 * 113.99906 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46964 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00272 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99852 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99828 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99818 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47542 * 60.00190 * 16 14 12 18 18 H 1.48502 * 109.47296 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47318 * 300.00029 * 16 14 12 20 20 C 1.39880 * 118.14254 * 0.02562 * 4 3 2 21 21 C 1.38119 * 119.00001 * 359.97438 * 20 4 3 22 22 N 1.31799 * 119.55404 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46803 * 269.97500 * 1 2 3 24 24 H 1.08996 * 109.47268 * 29.97944 * 1 2 3 25 25 H 1.08996 * 109.46888 * 149.98053 * 1 2 3 26 26 H 1.07997 * 120.50513 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.46887 * 300.00249 * 8 7 5 28 28 H 1.08993 * 109.47344 * 60.00286 * 8 7 5 29 29 H 1.08998 * 109.46974 * 184.99784 * 9 8 7 30 30 H 1.09001 * 109.46927 * 304.99564 * 9 8 7 31 31 H 1.09000 * 109.46770 * 299.99561 * 11 10 9 32 32 H 1.08995 * 109.47181 * 60.00249 * 11 10 9 33 33 H 0.96996 * 119.99548 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.50002 * 180.02562 * 20 4 3 35 35 H 1.08000 * 119.55376 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5868 1.1885 -0.0005 5 6 4.3599 2.4511 0.0000 6 8 3.7801 3.5180 0.0005 7 8 5.7062 2.4162 0.0000 8 6 6.3986 3.6925 0.0011 9 6 7.9098 3.4529 0.0003 10 8 8.2906 2.8173 -1.2216 11 6 9.6900 2.5466 -1.3244 12 6 9.9768 1.8789 -2.6446 13 1 9.1712 1.6814 -3.3361 14 6 11.2680 1.5212 -2.9701 15 7 12.2492 1.7622 -2.1281 16 14 11.6236 0.6942 -4.6068 17 1 11.2099 1.5917 -5.7152 18 1 13.0778 0.4128 -4.7137 19 1 10.8658 -0.5801 -4.6926 20 6 4.2346 -0.0513 -0.0016 21 6 3.4741 -1.2042 -0.0016 22 7 2.1571 -1.1465 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6493 2.1378 -0.0004 27 1 6.1202 4.2576 -0.8884 28 1 6.1203 4.2561 0.8915 29 1 8.4290 4.4070 0.0906 30 1 8.1766 2.8129 0.8413 31 1 10.2464 3.4818 -1.2613 32 1 9.9933 1.8876 -0.5109 33 1 13.1574 1.5102 -2.3569 34 1 5.3132 -0.1061 -0.0017 35 1 3.9650 -2.1662 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815242988.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:21 Heat of formation + Delta-G solvation = -104.069365 kcal Electronic energy + Delta-G solvation = -18872.523646 eV Core-core repulsion = 15642.785564 eV Total energy + Delta-G solvation = -3229.738082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92386 -39.78976 -37.14809 -36.12111 -33.49635 -32.80601 -32.67584 -30.16541 -27.91999 -27.03110 -25.30351 -23.06767 -22.51560 -22.13921 -20.83362 -18.12775 -17.23208 -16.61263 -16.43228 -16.28166 -15.84232 -15.42698 -15.00987 -14.75643 -14.57519 -14.31118 -13.73282 -13.49406 -13.10913 -12.75384 -12.63187 -12.56399 -12.06449 -11.88363 -11.49221 -11.03082 -10.93075 -10.82149 -10.70044 -10.48507 -10.17113 -10.09733 -9.80755 -9.22985 -9.18261 -8.91977 -8.25736 -6.15130 -4.17171 0.37135 0.82252 2.43462 2.52263 3.30125 3.32907 3.36743 3.53899 3.99751 4.28652 4.37471 4.48023 4.66766 4.70795 4.79183 5.12383 5.19229 5.21468 5.26340 5.29164 5.37934 5.41644 5.59953 5.75642 5.78401 5.81219 5.90323 6.01193 6.34924 6.39744 7.00544 7.35271 7.63533 7.65459 7.74377 8.08481 8.47413 8.94909 9.47761 10.96346 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.003711 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.391722 B = 7543.085831 C = 8418.049453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.117 3.883 3 C -0.113 4.113 4 C -0.071 4.071 5 C 0.508 3.492 6 O -0.505 6.505 7 O -0.332 6.332 8 C 0.075 3.925 9 C 0.061 3.939 10 O -0.391 6.391 11 C 0.195 3.805 12 C -0.517 4.517 13 H 0.066 0.934 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.909 3.091 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.119 4.119 21 C 0.098 3.902 22 N -0.466 5.466 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.265 0.735 34 H 0.157 0.843 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.021 -1.943 7.054 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.021 4.021 3 C -0.133 4.133 4 C -0.080 4.080 5 C 0.352 3.648 6 O -0.394 6.394 7 O -0.248 6.248 8 C 0.002 3.998 9 C -0.016 4.016 10 O -0.311 6.311 11 C 0.121 3.879 12 C -0.555 4.555 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.139 4.139 21 C -0.059 4.059 22 N -0.177 5.177 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.166 0.834 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.534 -2.425 6.926 20.867 hybrid contribution 1.213 0.650 -0.574 1.491 sum -18.322 -1.774 6.352 19.473 Atomic orbital electron populations 1.20721 0.88130 1.03797 1.03326 1.21270 0.97364 0.87601 0.95835 1.22108 0.92730 1.00400 0.98063 1.19548 0.93324 0.91836 1.03260 1.21035 0.81906 0.88847 0.73057 1.90811 1.71368 1.31571 1.45694 1.86629 1.18539 1.36796 1.82807 1.23309 0.91467 0.82246 1.02822 1.22329 0.90719 0.98017 0.90575 1.87919 1.29037 1.79450 1.34715 1.20238 0.75054 0.95065 0.97560 1.21007 0.93484 1.39023 1.02001 0.91554 1.24946 0.95661 0.95952 0.97871 1.69948 1.00327 1.47473 1.36020 0.86381 0.77051 0.79905 0.83062 1.19992 1.21121 1.19947 1.22663 1.03125 0.91879 0.96213 1.22850 0.88875 0.98797 0.95348 1.67395 1.10525 1.29451 1.10282 0.90193 0.90438 0.90162 0.83409 0.90209 0.90145 0.91711 0.93082 0.97582 0.97461 0.92532 0.82517 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.17 36.01 0.37 -0.35 16 2 C 0.12 1.22 6.78 -82.63 -0.56 0.66 16 3 C -0.11 -1.27 9.31 -39.01 -0.36 -1.63 16 4 C -0.07 -0.92 5.91 -104.66 -0.62 -1.54 16 5 C 0.51 7.71 7.92 34.76 0.28 7.98 16 6 O -0.51 -8.35 16.23 -19.21 -0.31 -8.66 16 7 O -0.33 -5.43 9.55 -43.22 -0.41 -5.84 16 8 C 0.07 1.15 5.85 37.16 0.22 1.37 16 9 C 0.06 1.08 6.33 37.16 0.24 1.32 16 10 O -0.39 -9.29 10.30 -38.80 -0.40 -9.69 16 11 C 0.19 5.25 5.69 36.01 0.20 5.45 16 12 C -0.52 -15.10 9.43 -34.44 -0.32 -15.42 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 16 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.12 -1.40 9.71 -39.01 -0.38 -1.78 16 21 C 0.10 1.04 11.17 -17.60 -0.20 0.85 16 22 N -0.47 -5.37 10.24 -9.53 -0.10 -5.47 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.15 1.47 7.74 -52.49 -0.41 1.07 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.16 1.81 7.71 -52.48 -0.40 1.40 16 35 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -33.30 317.03 -6.55 -39.85 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -4.58 Total: -4.22 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.24 Total: -1.55 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.64 Total: -31.31 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.12 Total: -24.19 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.30 -6.55 -39.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815242988.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.223 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds