Wall clock time and date at job start Mon Mar 30 2020 00:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29920 * 125.36740 * 2 1 4 4 C 1.36107 * 108.47520 * 179.69739 * 3 2 1 5 5 C 1.47272 * 126.46146 * 180.27305 * 4 3 2 6 6 O 1.21540 * 119.99682 * 180.18001 * 5 4 3 7 7 O 1.34775 * 120.00367 * 0.17748 * 5 4 3 8 8 C 1.45195 * 117.00176 * 177.70976 * 7 5 4 9 9 C 1.50697 * 112.84755 * 65.18351 * 8 7 5 10 10 H 1.08004 * 119.99526 * 242.51811 * 9 8 7 11 11 C 1.37869 * 120.00425 * 62.51440 * 9 8 7 12 12 N 1.31515 * 120.00307 * 353.77495 * 11 9 8 13 13 Si 1.86801 * 120.00279 * 173.77198 * 11 9 8 14 14 H 1.48505 * 109.47016 * 60.00413 * 13 11 9 15 15 H 1.48497 * 109.47557 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47167 * 300.00358 * 13 11 9 17 17 C 1.53782 * 113.61892 * 293.98293 * 8 7 5 18 18 C 1.53947 * 87.01912 * 220.04927 * 17 8 7 19 19 C 1.53779 * 87.11394 * 25.36264 * 18 17 8 20 20 C 1.36174 * 107.07833 * 0.42373 * 4 3 2 21 21 C 1.50700 * 126.52843 * 179.84015 * 20 4 3 22 22 O 1.34062 * 125.37247 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47359 * 270.03790 * 1 2 3 24 24 H 1.09000 * 109.46991 * 30.04310 * 1 2 3 25 25 H 1.09001 * 109.46960 * 150.04131 * 1 2 3 26 26 H 0.96998 * 120.00593 * 185.01464 * 12 11 9 27 27 H 1.09004 * 113.60878 * 334.57048 * 17 8 7 28 28 H 1.09002 * 113.61402 * 105.46670 * 17 8 7 29 29 H 1.09002 * 113.53825 * 270.80886 * 18 17 8 30 30 H 1.09006 * 113.74406 * 139.94568 * 18 17 8 31 31 H 1.08998 * 113.61254 * 220.09066 * 19 18 17 32 32 H 1.09002 * 113.69271 * 89.20066 * 19 18 17 33 33 H 1.09006 * 109.46751 * 179.71596 * 21 20 4 34 34 H 1.08999 * 109.47094 * 59.72113 * 21 20 4 35 35 H 1.08997 * 109.47786 * 299.71423 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2590 1.0594 0.0000 4 6 3.5613 0.6640 0.0068 5 6 4.7429 1.5430 0.0149 6 8 5.8587 1.0612 0.0172 7 8 4.5870 2.8817 0.0196 8 6 5.7944 3.6858 0.0791 9 6 6.6586 3.5354 -1.1462 10 1 7.6553 3.1290 -1.0575 11 6 6.1770 3.9165 -2.3805 12 7 4.9243 4.2958 -2.5092 13 14 7.3036 3.8943 -3.8704 14 1 7.8047 2.5140 -4.0915 15 1 6.5497 4.3444 -5.0680 16 1 8.4520 4.8062 -3.6362 17 6 6.5679 3.5391 1.4002 18 6 6.8191 5.0562 1.3284 19 6 5.5410 5.1491 0.4783 20 6 3.5658 -0.6978 0.0014 21 6 4.7797 -1.5908 0.0022 22 8 2.2831 -1.0932 0.0005 23 1 -0.3634 0.0007 1.0276 24 1 -0.3633 0.8896 -0.5145 25 1 -0.3633 -0.8904 -0.5132 26 1 4.5653 4.4941 -3.3882 27 1 5.9425 3.2394 2.2412 28 1 7.4746 2.9407 1.3112 29 1 7.7255 5.3221 0.7845 30 1 6.7404 5.5603 2.2917 31 1 5.6199 5.8486 -0.3538 32 1 4.6337 5.2906 1.0656 33 1 4.4633 -2.6339 0.0020 34 1 5.3761 -1.3923 0.8927 35 1 5.3775 -1.3923 -0.8873 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816076175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:11 Heat of formation + Delta-G solvation = -42.953478 kcal Electronic energy + Delta-G solvation = -20596.750282 eV Core-core repulsion = 17369.662384 eV Total energy + Delta-G solvation = -3227.087898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.11519 -39.10160 -37.01306 -34.56355 -34.10902 -32.77892 -32.25340 -29.96953 -26.58491 -25.81867 -24.52429 -23.64379 -22.46868 -21.18511 -19.63142 -18.52207 -17.36135 -16.78624 -16.33386 -15.19013 -15.10129 -14.75945 -14.19220 -14.10505 -13.76633 -13.56387 -13.35459 -12.97323 -12.60883 -12.58964 -12.19216 -12.15741 -11.54955 -11.12548 -10.99739 -10.96360 -10.78628 -10.41455 -10.30046 -10.26209 -9.86884 -9.77623 -9.47622 -8.77403 -8.54291 -8.51989 -8.39550 -6.05569 -4.19194 1.42201 2.44972 2.70115 3.29513 3.34063 3.37473 3.79435 4.07787 4.29399 4.38169 4.86432 5.16423 5.21046 5.35206 5.50337 5.53145 5.59333 5.68910 5.77148 5.82038 5.94088 6.08627 6.11468 6.21412 6.37357 6.51772 6.61553 6.69357 6.94451 7.14691 7.33092 7.57319 7.80072 7.86799 7.93163 8.34569 8.83785 9.22123 9.50805 10.98084 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.006867 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.783388 B = 4076.562394 C = 4390.208267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.171 3.829 3 N -0.431 5.431 4 C -0.037 4.037 5 C 0.547 3.453 6 O -0.504 6.504 7 O -0.320 6.320 8 C 0.238 3.762 9 C -0.517 4.517 10 H 0.068 0.932 11 C 0.075 3.925 12 N -0.856 5.856 13 Si 0.892 3.108 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.159 4.159 18 C -0.131 4.131 19 C -0.107 4.107 20 C 0.021 3.979 21 C -0.062 4.062 22 O -0.203 6.203 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.264 0.736 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -8.346 5.356 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.038 4.038 3 N -0.161 5.161 4 C -0.156 4.156 5 C 0.390 3.610 6 O -0.394 6.394 7 O -0.234 6.234 8 C 0.204 3.796 9 C -0.554 4.554 10 H 0.086 0.914 11 C -0.131 4.131 12 N -0.491 5.491 13 Si 0.719 3.281 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.197 4.197 18 C -0.168 4.168 19 C -0.145 4.145 20 C -0.034 4.034 21 C -0.119 4.119 22 O -0.091 6.091 23 H 0.109 0.891 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.994 -7.667 5.232 11.050 hybrid contribution 0.716 -0.692 -0.993 1.406 sum -5.278 -8.359 4.240 10.756 Atomic orbital electron populations 1.20214 0.81158 1.05026 1.04456 1.26276 0.96525 0.78425 1.02526 1.70931 1.00964 1.29102 1.15107 1.21107 0.91752 0.91181 1.11514 1.19057 0.85184 0.83074 0.73710 1.90749 1.24794 1.77091 1.46781 1.86669 1.41529 1.14818 1.80392 1.21265 0.79963 0.86362 0.91971 1.20892 1.00450 1.43220 0.90855 0.91358 1.25101 0.95116 0.93819 0.99092 1.70048 1.12809 1.42589 1.23680 0.86650 0.80894 0.78720 0.81800 1.20084 1.21158 1.19788 1.23563 1.00958 0.96259 0.98917 1.22561 0.99268 0.96374 0.98636 1.22892 0.95324 0.97847 0.98429 1.23633 0.83817 0.94460 1.01461 1.20399 0.89513 0.96270 1.05669 1.84258 1.16259 1.38111 1.70472 0.89135 0.87969 0.89601 0.92662 0.92279 0.91722 0.90199 0.92977 0.90714 0.92188 0.90746 0.88428 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.50 10.51 36.00 0.38 -0.13 16 2 C 0.17 2.76 8.30 -13.09 -0.11 2.66 16 3 N -0.43 -9.02 11.36 -7.67 -0.09 -9.11 16 4 C -0.04 -0.81 7.04 -83.04 -0.58 -1.39 16 5 C 0.55 13.88 7.52 34.40 0.26 14.14 16 6 O -0.50 -12.91 14.10 -19.30 -0.27 -13.18 16 7 O -0.32 -8.79 9.77 -40.70 -0.40 -9.19 16 8 C 0.24 6.25 0.47 -90.96 -0.04 6.21 16 9 C -0.52 -14.57 7.08 -34.44 -0.24 -14.81 16 10 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 11 C 0.08 2.12 5.30 -17.82 -0.09 2.03 16 12 N -0.86 -25.03 12.79 55.43 0.71 -24.32 16 13 Si 0.89 21.63 29.55 -169.99 -5.02 16.61 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C -0.16 -3.62 6.57 -25.83 -0.17 -3.79 16 18 C -0.13 -2.70 7.81 -25.83 -0.20 -2.90 16 19 C -0.11 -2.55 7.28 -25.92 -0.19 -2.74 16 20 C 0.02 0.38 7.44 -35.05 -0.26 0.12 16 21 C -0.06 -0.88 9.13 36.01 0.33 -0.55 16 22 O -0.20 -3.27 10.72 6.56 0.07 -3.20 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.26 7.36 8.32 -40.82 -0.34 7.02 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.48 8.09 -51.93 -0.42 1.06 16 29 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.89 7.98 -51.93 -0.41 1.47 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -33.78 307.55 -5.90 -39.68 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.60 Total: -0.76 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.93 Total: -1.16 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.62 Total: -33.43 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.60 Total: -25.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.78 -5.90 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816076175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.273 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds