Wall clock time and date at job start Mon Mar 30 2020 00:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47238 * 2 1 4 4 N 1.30001 * 127.33995 * 273.16583 * 3 2 1 5 5 O 1.20652 * 112.32250 * 180.32768 * 4 3 2 6 6 C 1.33472 * 113.17532 * 359.68769 * 5 4 3 7 7 C 1.37444 * 106.32643 * 0.02562 * 6 5 4 8 8 C 1.47255 * 128.57147 * 179.97438 * 7 6 5 9 9 O 1.21527 * 119.99883 * 185.18039 * 8 7 6 10 10 O 1.34763 * 120.00190 * 4.91179 * 8 7 6 11 11 C 1.45198 * 117.00068 * 185.66350 * 10 8 7 12 12 C 1.50701 * 112.84652 * 53.83531 * 11 10 8 13 13 H 1.08001 * 120.00130 * 245.41420 * 12 11 10 14 14 C 1.37882 * 119.99858 * 65.41751 * 12 11 10 15 15 N 1.31512 * 119.99793 * 184.07681 * 14 12 11 16 16 Si 1.86796 * 120.00101 * 4.07586 * 14 12 11 17 17 H 1.48498 * 109.47111 * 93.26528 * 16 14 12 18 18 H 1.48499 * 109.46917 * 213.26504 * 16 14 12 19 19 H 1.48497 * 109.46984 * 333.26813 * 16 14 12 20 20 C 1.53776 * 113.61585 * 282.52763 * 11 10 8 21 21 C 1.53778 * 87.08357 * 220.01964 * 20 11 10 22 22 C 1.53781 * 113.61331 * 185.02872 * 11 10 8 23 23 H 1.08998 * 109.46960 * 59.99553 * 1 2 3 24 24 H 1.09004 * 109.47235 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47052 * 300.00166 * 1 2 3 26 26 H 1.08995 * 109.47182 * 240.00327 * 2 1 3 27 27 H 1.09005 * 109.47462 * 119.99739 * 2 1 3 28 28 H 1.07996 * 126.83728 * 179.97438 * 6 5 4 29 29 H 0.96998 * 120.00193 * 180.02562 * 15 14 12 30 30 H 1.08999 * 113.61403 * 334.56724 * 20 11 10 31 31 H 1.09004 * 113.61388 * 105.46989 * 20 11 10 32 32 H 1.08996 * 113.61343 * 270.88726 * 21 20 11 33 33 H 1.08995 * 113.69236 * 139.99299 * 21 20 11 34 34 H 1.08993 * 113.61745 * 254.53331 * 22 11 10 35 35 H 1.08999 * 113.61446 * 25.35374 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2414 2.1833 -1.0320 5 8 2.6521 3.2740 -0.7202 6 6 2.7829 3.4287 0.5990 7 6 2.3882 2.2416 1.1683 8 6 2.3394 1.8787 2.5946 9 8 2.0512 0.7449 2.9235 10 8 2.6195 2.8025 3.5349 11 6 2.6760 2.3454 4.9119 12 6 3.6183 1.1853 5.1051 13 1 3.2333 0.2202 5.3997 14 6 4.9719 1.3560 4.9058 15 7 5.7848 0.3261 4.9958 16 14 5.6511 3.0500 4.5078 17 1 6.0737 3.7212 5.7632 18 1 6.8195 2.9143 3.6014 19 1 4.5999 3.8609 3.8426 20 6 1.2921 2.1298 5.5466 21 6 1.8719 2.7460 6.8307 22 6 2.8791 3.4801 5.9297 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.1305 4.3108 1.1162 29 1 6.7371 0.4462 4.8560 30 1 0.5045 2.7302 5.0913 31 1 1.0184 1.0799 5.6511 32 1 2.3327 2.0158 7.4959 33 1 1.1814 3.4126 7.3472 34 1 3.8866 3.5204 6.3435 35 1 2.5267 4.4500 5.5786 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860744177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:13 Heat of formation + Delta-G solvation = -1.226685 kcal Electronic energy + Delta-G solvation = -20816.776074 eV Core-core repulsion = 17591.497585 eV Total energy + Delta-G solvation = -3225.278489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.71438 -39.52052 -37.37862 -35.12607 -34.39810 -32.41945 -31.99361 -31.06724 -26.80951 -25.13112 -25.00726 -24.01589 -22.74200 -20.59699 -20.40358 -18.65574 -17.74821 -17.51417 -16.93220 -15.91505 -15.44867 -15.32226 -14.66821 -14.28953 -14.05228 -13.85807 -13.44596 -12.89191 -12.81631 -12.49764 -11.81265 -11.76502 -11.53150 -11.45585 -11.09941 -11.07826 -10.78137 -10.70223 -10.25119 -10.07548 -9.87210 -9.77429 -9.64267 -9.47277 -9.09416 -8.82110 -8.65764 -6.26941 -4.33026 1.32840 1.97223 3.04370 3.18723 3.28105 3.38492 3.65848 3.83064 4.23386 4.29563 4.50756 5.04062 5.14983 5.34959 5.35441 5.42131 5.44267 5.48257 5.63527 5.70270 5.81728 5.96528 5.99915 6.15700 6.24937 6.32069 6.32748 6.39747 6.58045 6.78128 6.87774 7.18317 7.36208 7.71055 8.31736 8.34896 8.80235 8.89835 9.33230 10.83404 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.007779 C = 0.007127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.047631 B = 3598.545425 C = 3927.878699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.073 3.927 4 N -0.365 5.365 5 O 0.088 5.912 6 C 0.002 3.998 7 C -0.227 4.227 8 C 0.537 3.463 9 O -0.472 6.472 10 O -0.367 6.367 11 C 0.200 3.800 12 C -0.503 4.503 13 H 0.087 0.913 14 C 0.082 3.918 15 N -0.876 5.876 16 Si 0.860 3.140 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.236 1.236 20 C -0.146 4.146 21 C -0.124 4.124 22 C -0.132 4.132 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.230 0.770 29 H 0.267 0.733 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.350 6.410 -6.047 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.090 4.090 4 N -0.073 5.073 5 O 0.030 5.970 6 C -0.079 4.079 7 C -0.233 4.233 8 C 0.378 3.622 9 O -0.359 6.359 10 O -0.286 6.286 11 C 0.166 3.834 12 C -0.540 4.540 13 H 0.105 0.895 14 C -0.123 4.123 15 N -0.512 5.512 16 Si 0.687 3.313 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.159 1.159 20 C -0.184 4.184 21 C -0.161 4.161 22 C -0.169 4.169 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.246 0.754 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.394 5.881 -7.215 11.888 hybrid contribution 0.777 0.752 0.728 1.303 sum -6.617 6.633 -6.487 11.396 Atomic orbital electron populations 1.21656 0.93850 1.02323 1.01999 1.20099 0.96519 0.87451 1.04835 1.24853 0.99044 0.98700 0.86356 1.73609 1.17214 0.92905 1.23595 1.84515 1.61711 1.27293 1.23511 1.26560 0.97649 1.00471 0.83251 1.21982 1.11809 0.95115 0.94369 1.19060 0.75335 0.83995 0.83772 1.90784 1.42422 1.20401 1.82261 1.86600 1.80281 1.41547 1.20137 1.21737 0.94362 0.93651 0.73603 1.20798 0.89956 0.95879 1.47352 0.89512 1.25028 0.96963 0.96911 0.93424 1.69909 1.04174 1.30141 1.46977 0.87139 0.79459 0.85710 0.79041 1.20274 1.21741 1.15881 1.23338 0.97289 1.01053 0.96697 1.22469 0.98008 0.99568 0.96061 1.23275 0.99826 0.97277 0.96559 0.92927 0.91545 0.92141 0.90134 0.87517 0.75396 0.92277 0.91691 0.91175 0.89493 0.92343 0.91266 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.05 -0.78 6.28 -27.88 -0.18 -0.95 16 3 C 0.07 1.25 6.84 -79.75 -0.55 0.71 16 4 N -0.36 -5.99 12.01 34.79 0.42 -5.58 16 5 O 0.09 1.31 11.06 18.71 0.21 1.52 16 6 C 0.00 0.03 12.24 30.44 0.37 0.40 16 7 C -0.23 -4.19 6.46 -102.91 -0.67 -4.86 16 8 C 0.54 11.86 7.53 34.39 0.26 12.12 16 9 O -0.47 -11.57 14.07 -19.29 -0.27 -11.84 16 10 O -0.37 -8.19 7.97 -40.66 -0.32 -8.51 16 11 C 0.20 4.59 0.25 -90.96 -0.02 4.57 16 12 C -0.50 -13.74 7.12 -34.44 -0.25 -13.99 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 15 N -0.88 -26.10 13.96 55.43 0.77 -25.33 16 16 Si 0.86 20.55 24.59 -169.99 -4.18 16.37 16 17 H -0.28 -6.41 7.10 56.52 0.40 -6.01 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.24 -5.23 5.61 56.52 0.32 -4.91 16 20 C -0.15 -2.93 7.13 -25.92 -0.18 -3.12 16 21 C -0.12 -2.24 7.81 -25.92 -0.20 -2.44 16 22 C -0.13 -2.64 6.10 -25.92 -0.16 -2.80 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.11 1.84 6.91 -51.93 -0.36 1.48 16 28 H 0.23 2.55 8.06 -52.49 -0.42 2.13 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 32 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.45 5.75 -51.93 -0.30 1.15 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -31.32 296.90 -4.72 -36.05 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.52 Total: 2.47 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.30 Total: -9.61 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 1.19 Total: -30.91 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.39 Total: -18.84 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.18 Total: 16.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.32 -4.72 -36.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860744177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.819 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds