Wall clock time and date at job start Mon Mar 30 2020 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35920 * 117.00544 * 2 1 4 4 C 1.38862 * 120.39907 * 0.02562 * 3 2 1 5 5 N 1.31883 * 121.01058 * 179.70054 * 4 3 2 6 6 C 1.31679 * 121.94622 * 0.27711 * 5 4 3 7 7 C 1.39574 * 120.68257 * 359.97438 * 6 5 4 8 8 C 1.47732 * 120.53206 * 179.97438 * 7 6 5 9 9 O 1.21474 * 119.99974 * 173.94790 * 8 7 6 10 10 O 1.34711 * 120.00261 * 353.95099 * 8 7 6 11 11 C 1.45201 * 116.99848 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46911 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.46943 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99907 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99819 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00044 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47207 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46888 * 119.99750 * 17 15 13 20 20 H 1.48495 * 109.47275 * 239.99352 * 17 15 13 21 21 C 1.38832 * 120.40907 * 180.23337 * 3 2 1 22 22 C 1.50702 * 120.87964 * 0.02562 * 21 3 2 23 23 H 1.08996 * 109.47434 * 59.99526 * 1 2 3 24 24 H 1.08997 * 109.47844 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46904 * 299.99696 * 1 2 3 26 26 H 1.07994 * 119.49414 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.65209 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47172 * 299.99869 * 11 10 8 29 29 H 1.08998 * 109.47182 * 59.99925 * 11 10 8 30 30 H 1.08995 * 109.46792 * 299.99768 * 12 11 10 31 31 H 1.08998 * 109.47155 * 60.00035 * 12 11 10 32 32 H 0.97008 * 119.99772 * 180.02562 * 16 15 13 33 33 H 1.08998 * 109.47467 * 263.95541 * 22 21 3 34 34 H 1.09005 * 109.47326 * 23.95511 * 22 21 3 35 35 H 1.09003 * 109.47114 * 143.95188 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8843 3.5623 0.0064 6 6 3.1950 3.6897 0.0067 7 6 4.0200 2.5639 0.0011 8 6 5.4900 2.7107 0.0008 9 8 6.1984 1.7296 0.1069 10 8 6.0449 3.9325 -0.1170 11 6 7.4953 4.0014 -0.1090 12 6 7.9374 5.4591 -0.2526 13 6 9.4427 5.5306 -0.2437 14 1 10.0257 4.6268 -0.1451 15 6 10.0756 6.7499 -0.3603 16 7 9.3656 7.8506 -0.4799 17 14 11.9414 6.8387 -0.3486 18 1 12.5012 5.4710 -0.2030 19 1 12.4166 7.4355 -1.6227 20 1 12.3898 7.6804 0.7897 21 6 3.4320 1.2934 -0.0049 22 6 4.2809 0.0482 -0.0108 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2197 2.3225 0.0005 27 1 3.6359 4.6755 0.0121 28 1 7.8730 3.5975 0.8303 29 1 7.8912 3.4184 -0.9406 30 1 7.5597 5.8625 -1.1920 31 1 7.5414 6.0424 0.5787 32 1 9.8110 8.7084 -0.5624 33 1 4.5787 -0.1934 1.0094 34 1 3.7080 -0.7801 -0.4279 35 1 5.1699 0.2175 -0.6185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869593772.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:42 Heat of formation + Delta-G solvation = -115.240794 kcal Electronic energy + Delta-G solvation = -19232.539777 eV Core-core repulsion = 16002.317265 eV Total energy + Delta-G solvation = -3230.222512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.23091 -41.08325 -39.10467 -37.85021 -35.45699 -34.85522 -32.66658 -31.72429 -29.07928 -28.50072 -27.18183 -25.33041 -23.64555 -22.90316 -22.14143 -19.67370 -18.77569 -18.44213 -17.67764 -17.43641 -17.39903 -17.21300 -16.89889 -16.46998 -15.39231 -15.20656 -14.62340 -14.59736 -14.39412 -14.00917 -13.91898 -13.85668 -13.30770 -13.12788 -13.06771 -12.74182 -12.62061 -12.54984 -12.36420 -11.82249 -11.52069 -11.46922 -11.36236 -10.76762 -10.63021 -10.60649 -9.56789 -8.26462 -6.39372 -0.70056 0.02202 1.34546 1.40110 1.42389 1.47857 1.57372 2.22176 2.41346 2.55364 3.08304 3.22707 3.34620 3.54402 3.57515 3.94708 4.04241 4.23628 4.24811 4.36210 4.42976 4.54019 4.58014 4.66761 4.70079 4.79954 4.98923 5.07823 5.17725 5.34936 5.47926 5.52899 5.74348 6.06880 6.10560 6.56783 6.69012 6.74850 7.30418 8.86357 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.048456 B = 0.003417 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.704962 B = 8191.803711 C = 8733.689004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.069 3.931 4 C 0.059 3.941 5 N -0.472 5.472 6 C 0.122 3.878 7 C -0.155 4.155 8 C 0.507 3.493 9 O -0.518 6.518 10 O -0.356 6.356 11 C 0.092 3.908 12 C 0.030 3.970 13 C -0.548 4.548 14 H 0.066 0.934 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.973 3.027 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.023 4.023 22 C -0.110 4.110 23 H 0.073 0.927 24 H 0.125 0.875 25 H 0.073 0.927 26 H 0.202 0.798 27 H 0.175 0.825 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.268 0.732 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.347 -15.362 0.957 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.227 6.227 3 C 0.021 3.979 4 C -0.099 4.099 5 N -0.182 5.182 6 C -0.036 4.036 7 C -0.158 4.158 8 C 0.353 3.647 9 O -0.410 6.410 10 O -0.272 6.272 11 C 0.019 3.981 12 C -0.007 4.007 13 C -0.586 4.586 14 H 0.084 0.916 15 C -0.193 4.193 16 N -0.566 5.566 17 Si 0.797 3.203 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.032 4.032 22 C -0.166 4.166 23 H 0.091 0.909 24 H 0.144 0.856 25 H 0.091 0.909 26 H 0.219 0.781 27 H 0.192 0.808 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.544 -14.919 0.971 24.607 hybrid contribution 1.430 -0.158 -0.009 1.439 sum -18.114 -15.076 0.963 23.587 Atomic orbital electron populations 1.23551 0.75347 1.06517 1.03003 1.86095 1.24104 1.24296 1.88233 1.19602 0.91334 0.87198 0.99770 1.23780 1.02474 0.86122 0.97484 1.67725 1.11315 1.26959 1.12181 1.23183 0.88556 0.98823 0.92993 1.19836 0.90082 0.95211 1.10693 1.21163 0.89287 0.81398 0.72873 1.90758 1.64352 1.39326 1.46514 1.86549 1.26705 1.31342 1.82629 1.23250 0.73321 1.00146 1.01371 1.18997 0.95588 0.89358 0.96783 1.21400 0.91605 0.93903 1.51695 0.91601 1.25956 1.04173 0.95044 0.94146 1.70105 1.37748 0.98789 1.49958 0.85277 0.78388 0.78672 0.77973 1.18571 1.20119 1.20127 1.19965 0.92352 0.95092 0.95752 1.20881 0.98931 0.93007 1.03754 0.90882 0.85646 0.90874 0.78141 0.80782 0.91777 0.91803 0.97394 0.97347 0.92355 0.90058 0.89414 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.18 16 2 O -0.31 -5.14 9.57 -92.65 -0.89 -6.02 16 3 C 0.07 1.43 6.68 22.56 0.15 1.58 16 4 C 0.06 1.11 10.21 84.83 0.87 1.98 16 5 N -0.47 -11.79 10.34 -194.35 -2.01 -13.80 16 6 C 0.12 3.43 10.78 85.04 0.92 4.35 16 7 C -0.15 -4.65 5.89 -20.02 -0.12 -4.77 16 8 C 0.51 18.40 7.85 70.33 0.55 18.95 16 9 O -0.52 -20.03 13.29 19.92 0.26 -19.77 16 10 O -0.36 -14.40 9.51 -56.21 -0.53 -14.93 16 11 C 0.09 4.11 5.41 71.98 0.39 4.50 16 12 C 0.03 1.60 5.35 29.85 0.16 1.76 16 13 C -0.55 -30.98 9.11 25.60 0.23 -30.74 16 14 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 17 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 C -0.02 -0.61 5.97 -19.30 -0.12 -0.72 16 22 C -0.11 -2.70 8.70 71.24 0.62 -2.08 16 23 H 0.07 0.30 7.67 -2.39 -0.02 0.29 16 24 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.07 0.30 7.67 -2.39 -0.02 0.29 16 26 H 0.20 2.08 6.30 -2.91 -0.02 2.06 16 27 H 0.18 4.86 7.63 -2.91 -0.02 4.83 16 28 H 0.06 2.80 8.14 -2.39 -0.02 2.79 16 29 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.79 7.45 -2.38 -0.02 1.77 16 35 H 0.08 2.24 5.96 -2.39 -0.01 2.23 16 Total: -1.00 -68.11 305.67 5.48 -62.63 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.10 Total: 4.72 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.23 Total: -3.25 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -1.72 Total: -69.03 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.16 Total: -40.73 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.11 5.48 -62.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869593772.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.607 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds