Wall clock time and date at job start Mon Mar 30 2020 00:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.09001 * 109.47100 * 304.99870 * 3 2 1 5 5 C 1.50702 * 109.46694 * 185.00387 * 3 2 1 6 6 H 1.08005 * 119.99724 * 239.99778 * 5 3 2 7 7 C 1.37871 * 120.00230 * 59.99992 * 5 3 2 8 8 N 1.31515 * 120.00239 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00177 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46876 * 90.00250 * 9 7 5 11 11 H 1.48494 * 109.47385 * 210.00245 * 9 7 5 12 12 H 1.48502 * 109.47022 * 330.00588 * 9 7 5 13 13 O 1.45198 * 109.46928 * 65.00585 * 3 2 1 14 14 C 1.34727 * 116.99697 * 269.99532 * 13 3 2 15 15 O 1.21473 * 120.00137 * 0.02562 * 14 13 3 16 16 C 1.47706 * 119.99734 * 180.02562 * 14 13 3 17 17 N 1.32903 * 119.79151 * 359.97438 * 16 14 13 18 18 C 1.31347 * 121.69138 * 179.72618 * 17 16 14 19 19 C 1.38794 * 121.07948 * 0.58393 * 18 17 16 20 20 C 1.38288 * 119.45125 * 359.42381 * 19 18 17 21 21 C 1.39367 * 118.44142 * 0.27686 * 20 19 18 22 22 O 1.35629 * 120.54208 * 179.97438 * 21 20 19 23 23 C 1.42899 * 117.00414 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.47526 * 59.99730 * 1 2 3 25 25 H 1.08998 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 299.99437 * 1 2 3 27 27 H 1.09001 * 109.46735 * 240.00070 * 2 1 3 28 28 H 1.08995 * 109.47526 * 120.00270 * 2 1 3 29 29 H 0.96998 * 120.00149 * 180.02562 * 8 7 5 30 30 H 1.08010 * 119.46197 * 180.28545 * 18 17 16 31 31 H 1.08002 * 120.27917 * 179.70359 * 19 18 17 32 32 H 1.07998 * 120.78030 * 180.29812 * 20 19 18 33 33 H 1.08992 * 109.47216 * 179.97438 * 23 22 21 34 34 H 1.08991 * 109.46938 * 300.00486 * 23 22 21 35 35 H 1.09004 * 109.46798 * 59.99883 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8812 -1.3820 10 1 6.5547 -0.3503 -0.7605 11 1 6.3828 0.9224 -2.8174 12 1 6.5569 2.0737 -0.6903 13 8 1.6559 2.0916 1.2408 14 6 0.4684 2.7277 1.2561 15 8 -0.2273 2.7394 0.2604 16 6 0.0124 3.4109 2.4837 17 7 0.7767 3.3951 3.5709 18 6 0.4104 3.9947 4.6806 19 6 -0.8028 4.6632 4.7670 20 6 -1.6342 4.7087 3.6629 21 6 -1.2217 4.0705 2.4947 22 8 -2.0038 4.0879 1.3868 23 6 -3.2485 4.7833 1.4821 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8291 -0.0610 -2.9500 30 1 1.0619 3.9629 5.5416 31 1 -1.0932 5.1478 5.6875 32 1 -2.5808 5.2270 3.7048 33 1 -3.7738 4.7204 0.5292 34 1 -3.8584 4.3311 2.2641 35 1 -3.0625 5.8293 1.7258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870310533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:32 Heat of formation + Delta-G solvation = -108.218924 kcal Electronic energy + Delta-G solvation = -20238.132722 eV Core-core repulsion = 17008.214702 eV Total energy + Delta-G solvation = -3229.918020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.01800 -40.74835 -39.23330 -37.51955 -35.47386 -33.58935 -33.19195 -31.90695 -29.37374 -28.36174 -26.33530 -25.02892 -23.88284 -22.76255 -21.48428 -19.49370 -18.95108 -18.66881 -17.90221 -17.53243 -17.26804 -16.61698 -16.52111 -15.88317 -15.34297 -14.95425 -14.80689 -14.65080 -14.54415 -13.86253 -13.53329 -13.35719 -13.23483 -13.10466 -12.81035 -12.56393 -12.44615 -12.42660 -12.13692 -11.78909 -11.53357 -11.35318 -10.85799 -10.82199 -10.64099 -10.51622 -9.60020 -8.26945 -6.43791 -0.45863 0.22404 1.40451 1.43644 1.54371 1.57431 1.93300 2.15276 2.41133 2.77342 3.01794 3.34810 3.58782 3.77249 3.97710 4.19154 4.29055 4.34639 4.36546 4.36915 4.43835 4.56610 4.69986 4.81143 4.88334 4.97306 5.05347 5.20616 5.34231 5.41609 5.50629 5.65504 5.94094 6.10276 6.20041 6.58701 6.76659 7.08250 7.28331 8.80390 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.005372 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.241896 B = 5210.499768 C = 5772.279777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.127 4.127 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.061 0.939 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.984 3.016 10 H -0.265 1.265 11 H -0.274 1.274 12 H -0.268 1.268 13 O -0.349 6.349 14 C 0.498 3.502 15 O -0.519 6.519 16 C 0.011 3.989 17 N -0.437 5.437 18 C 0.049 3.951 19 C -0.074 4.074 20 C -0.167 4.167 21 C 0.133 3.867 22 O -0.313 6.313 23 C 0.008 3.992 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.271 0.729 30 H 0.198 0.802 31 H 0.202 0.798 32 H 0.192 0.808 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 10.065 14.783 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.079 0.921 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.190 1.190 11 H -0.199 1.199 12 H -0.193 1.193 13 O -0.265 6.265 14 C 0.343 3.657 15 O -0.409 6.409 16 C -0.123 4.123 17 N -0.149 5.149 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.193 4.193 21 C 0.082 3.918 22 O -0.224 6.224 23 C -0.086 4.086 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.215 0.785 31 H 0.219 0.781 32 H 0.209 0.791 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.305 9.399 13.946 20.839 hybrid contribution -0.031 0.259 -0.629 0.681 sum -12.337 9.658 13.317 20.562 Atomic orbital electron populations 1.21678 0.96335 1.00535 0.99817 1.21850 0.94416 0.98008 1.02240 1.20433 0.94721 0.89365 0.78564 0.97662 1.21300 0.90400 1.40127 1.06960 0.92111 1.25817 1.04461 0.93725 0.94128 1.70013 1.37472 1.37890 1.09843 0.85180 0.77404 0.79096 0.77691 1.19014 1.19878 1.19289 1.86631 1.35003 1.62692 1.42186 1.21228 0.80206 0.76599 0.87710 1.90777 1.55685 1.59123 1.35321 1.19516 0.93523 1.06292 0.92958 1.67666 1.32178 1.15748 0.99331 1.23582 0.97323 0.95261 0.95253 1.22880 0.92122 0.94257 1.00068 1.22228 1.04066 1.02193 0.90835 1.20200 0.89669 0.93276 0.88615 1.86395 1.32189 1.71111 1.32722 1.23584 0.82063 0.97173 1.05765 0.94327 0.91729 0.95327 0.89157 0.93922 0.91933 0.78482 0.78145 0.79103 0.87162 0.89986 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.56 71.98 0.62 -5.52 16 2 C -0.13 -7.01 5.49 30.59 0.17 -6.84 16 3 C 0.22 13.38 2.25 29.85 0.07 13.45 16 4 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 5 C -0.55 -33.84 8.90 25.60 0.23 -33.61 16 6 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -54.67 11.29 21.45 0.24 -54.43 16 9 Si 0.98 45.16 29.54 68.60 2.03 47.19 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 O -0.35 -19.74 9.62 -56.37 -0.54 -20.28 16 14 C 0.50 25.33 6.39 70.32 0.45 25.78 16 15 O -0.52 -27.95 12.32 26.94 0.33 -27.62 16 16 C 0.01 0.43 6.76 41.90 0.28 0.71 16 17 N -0.44 -15.72 10.11 -184.67 -1.87 -17.59 16 18 C 0.05 1.08 11.17 84.90 0.95 2.03 16 19 C -0.07 -1.03 10.10 22.41 0.23 -0.80 16 20 C -0.17 -2.92 9.13 22.55 0.21 -2.71 16 21 C 0.13 4.07 6.71 22.95 0.15 4.22 16 22 O -0.31 -9.96 8.56 -68.43 -0.59 -10.55 16 23 C 0.01 0.13 9.83 113.37 1.11 1.25 16 24 H 0.04 1.95 7.79 -2.39 -0.02 1.93 16 25 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.03 1.37 6.06 -2.39 -0.01 1.36 16 27 H 0.09 5.29 5.95 -2.39 -0.01 5.28 16 28 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.19 1.53 6.46 -2.91 -0.02 1.51 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 0.91 7.70 -2.39 -0.02 0.89 16 35 H 0.08 0.92 7.70 -2.38 -0.02 0.90 16 Total: -1.00 -82.98 298.83 5.62 -77.37 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.10 Total: 6.46 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.91 Total: -0.54 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.63 Total: -72.02 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -0.80 Total: -58.45 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -82.98 5.62 -77.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870310533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.854 kcal (2) G-P(sol) polarization free energy of solvation -82.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds