Wall clock time and date at job start Mon Mar 30 2020 00:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35128 * 126.44128 * 2 1 4 4 O 1.33935 * 108.76722 * 180.02562 * 3 2 1 5 5 C 1.34913 * 109.38022 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98487 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00261 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99643 * 0.02881 * 6 5 4 9 9 C 1.47422 * 125.65155 * 359.96699 * 8 6 5 10 10 C 1.54907 * 104.83115 * 155.91433 * 9 8 6 11 11 C 1.55162 * 101.58039 * 37.01385 * 10 9 8 12 12 O 1.42905 * 110.71869 * 82.86050 * 11 10 9 13 13 C 1.50701 * 110.72075 * 205.95482 * 11 10 9 14 14 H 1.08000 * 119.99666 * 357.56011 * 13 11 10 15 15 C 1.37875 * 120.00020 * 177.56128 * 13 11 10 16 16 N 1.31514 * 120.00056 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00248 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47056 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47253 * 119.99841 * 17 15 13 20 20 H 1.48495 * 109.47433 * 239.99969 * 17 15 13 21 21 C 1.47488 * 125.59011 * 180.02562 * 8 6 5 22 22 C 1.36537 * 108.02989 * 0.23097 * 5 4 3 23 23 H 1.08994 * 109.47078 * 89.97534 * 1 2 3 24 24 H 1.09001 * 109.46944 * 209.97152 * 1 2 3 25 25 H 1.09003 * 109.46736 * 329.97241 * 1 2 3 26 26 H 1.07997 * 125.61628 * 0.02562 * 3 2 1 27 27 H 1.09000 * 110.36343 * 37.08413 * 9 8 6 28 28 H 1.08992 * 110.46306 * 274.80415 * 9 8 6 29 29 H 1.09001 * 111.00887 * 278.94185 * 10 9 8 30 30 H 1.09000 * 111.00350 * 155.08660 * 10 9 8 31 31 H 0.96696 * 114.00036 * 182.44115 * 12 11 10 32 32 H 0.97001 * 120.00180 * 180.02562 * 16 15 13 33 33 H 1.09001 * 110.03275 * 61.63889 * 21 8 6 34 34 H 1.09000 * 109.96057 * 300.32729 * 21 8 6 35 35 H 1.07998 * 126.65146 * 179.77842 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8379 -1.4941 -0.0014 7 8 4.7471 -2.7076 -0.0015 8 7 6.0521 -0.9091 -0.0020 9 6 6.3063 0.5430 -0.0025 10 6 7.7215 0.6981 0.6080 11 6 8.4507 -0.5399 0.0223 12 8 8.9240 -0.2698 -1.2988 13 6 9.5870 -0.9624 0.9175 14 1 9.8157 -0.3917 1.8055 15 6 10.3345 -2.0775 0.6031 16 7 10.0556 -2.7726 -0.4779 17 14 11.7434 -2.6008 1.7124 18 1 11.8495 -1.6588 2.8555 19 1 11.4882 -3.9716 2.2233 20 1 13.0120 -2.5884 0.9407 21 6 7.3460 -1.6170 -0.0036 22 6 2.3409 -1.1292 -0.0049 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3633 0.8898 0.5143 26 1 1.9770 2.1145 0.0004 27 1 5.5689 1.0574 0.6138 28 1 6.2873 0.9328 -1.0202 29 1 7.6849 0.6512 1.6963 30 1 8.1919 1.6229 0.2739 31 1 9.3546 -1.0239 -1.7242 32 1 10.5812 -3.5573 -0.6990 33 1 7.4393 -2.2224 -0.9052 34 1 7.4249 -2.2500 0.8803 35 1 2.0266 -2.1624 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880413578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:15 Heat of formation + Delta-G solvation = -70.541599 kcal Electronic energy + Delta-G solvation = -20243.403795 eV Core-core repulsion = 17015.119586 eV Total energy + Delta-G solvation = -3228.284209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.61357 -39.21320 -37.24131 -34.54385 -34.00875 -32.21911 -30.71104 -29.90937 -28.05193 -27.21157 -25.36271 -23.36729 -21.74445 -20.92757 -19.66368 -18.93604 -17.20721 -17.12362 -16.30759 -16.20168 -15.47560 -14.83352 -14.69782 -14.28244 -13.62884 -13.31442 -13.19140 -13.11970 -12.92412 -12.82603 -12.64369 -12.16641 -11.80463 -11.60836 -11.48922 -11.08544 -10.80945 -10.64950 -10.48785 -10.18942 -9.79309 -9.67213 -9.35780 -8.70102 -8.58169 -8.34656 -7.94595 -6.31163 -4.39804 1.25093 2.34590 2.84994 3.19368 3.28334 3.31750 3.55295 3.58516 4.25671 4.68652 4.75421 4.91430 4.97000 5.27132 5.41456 5.45961 5.60166 5.69633 5.76201 5.80970 5.90072 5.93660 6.05912 6.24654 6.42174 6.47792 6.72191 6.81544 6.82939 7.00601 7.21762 7.33765 7.71061 7.96907 8.06700 8.51834 8.64507 9.28280 9.37973 10.76818 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.040542 B = 0.004736 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.467778 B = 5911.261213 C = 6201.954956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.195 4.195 3 C -0.024 4.024 4 O -0.155 6.155 5 C -0.053 4.053 6 C 0.599 3.401 7 O -0.533 6.533 8 N -0.599 5.599 9 C 0.101 3.899 10 C -0.117 4.117 11 C 0.247 3.753 12 O -0.585 6.585 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.103 3.897 22 C -0.133 4.133 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.205 0.795 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.384 0.616 32 H 0.270 0.730 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.825 7.424 0.730 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.196 4.196 3 C -0.094 4.094 4 O -0.050 6.050 5 C -0.105 4.105 6 C 0.387 3.613 7 O -0.412 6.412 8 N -0.330 5.330 9 C -0.021 4.021 10 C -0.155 4.155 11 C 0.207 3.793 12 O -0.394 6.394 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.018 4.018 22 C -0.154 4.154 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.222 0.778 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.817 7.354 0.752 15.671 hybrid contribution 0.751 -0.981 0.377 1.292 sum -13.066 6.373 1.128 14.581 Atomic orbital electron populations 1.20151 0.88911 1.02608 1.02102 1.20436 0.97458 0.92527 1.09222 1.24160 0.80559 0.99862 1.04841 1.84231 1.28652 1.21953 1.70204 1.22344 0.96344 0.80332 1.11512 1.16278 0.80489 0.86042 0.78539 1.90850 1.85528 1.12129 1.52743 1.48858 1.06104 1.08869 1.69217 1.22439 0.98112 0.80629 1.00964 1.22766 0.92788 1.00050 0.99896 1.19512 0.89710 0.88049 0.82040 1.86097 1.79374 1.43271 1.30653 1.21558 1.14794 1.11510 1.09713 0.91366 1.25083 0.97406 0.95511 0.95296 1.69648 1.40408 1.18383 1.24998 0.86330 0.81484 0.78519 0.80479 1.19562 1.20740 1.20707 1.23229 0.79418 0.96873 1.02300 1.21771 0.90563 1.00395 1.02652 0.91459 0.91430 0.91649 0.77831 0.91089 0.91483 0.90429 0.90315 0.76459 0.91951 0.91206 0.91074 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.39 36.01 0.37 -0.29 16 2 C -0.20 -2.31 6.14 -104.93 -0.64 -2.95 16 3 C -0.02 -0.28 12.00 29.63 0.36 0.08 16 4 O -0.16 -2.32 7.86 4.99 0.04 -2.28 16 5 C -0.05 -0.92 6.93 -36.80 -0.25 -1.17 16 6 C 0.60 12.66 7.82 -12.86 -0.10 12.56 16 7 O -0.53 -12.73 17.19 5.20 0.09 -12.64 16 8 N -0.60 -12.85 3.34 -171.70 -0.57 -13.42 16 9 C 0.10 1.88 6.16 -2.53 -0.02 1.87 16 10 C -0.12 -2.36 6.22 -24.58 -0.15 -2.51 16 11 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 12 O -0.58 -14.70 13.07 -35.23 -0.46 -15.16 16 13 C -0.54 -13.98 8.11 -34.44 -0.28 -14.26 16 14 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 15 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 16 N -0.90 -23.72 10.96 55.43 0.61 -23.11 16 17 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 C 0.10 2.50 5.41 -2.81 -0.02 2.49 16 22 C -0.13 -1.99 10.57 -39.39 -0.42 -2.40 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.21 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.07 1.16 6.22 -51.93 -0.32 0.84 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.38 9.90 7.23 45.56 0.33 10.23 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.07 1.84 8.00 -51.93 -0.42 1.42 16 34 H 0.07 1.86 7.81 -51.93 -0.41 1.46 16 35 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -29.67 299.37 -5.86 -35.53 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.73 Total: 10.20 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.03 Total: -36.54 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.33 Total: -30.08 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.67 -5.86 -35.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880413578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.008 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds