Wall clock time and date at job start Mon Mar 30 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30248 * 125.62328 * 2 1 4 4 C 1.34477 * 108.70449 * 179.97438 * 3 2 1 5 5 C 1.34329 * 107.66779 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.44283 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47177 * 90.00062 * 6 5 4 8 8 O 1.20835 * 119.99600 * 0.02562 * 7 6 5 9 9 O 1.34228 * 120.00368 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00205 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.50701 * 115.55544 * 294.88682 * 11 10 9 13 13 H 1.07995 * 119.99892 * 95.15843 * 12 11 10 14 14 C 1.37875 * 119.99625 * 274.89404 * 12 11 10 15 15 N 1.31516 * 120.00645 * 6.38641 * 14 12 11 16 16 Si 1.86804 * 119.99966 * 186.39037 * 14 12 11 17 17 H 1.48497 * 109.46911 * 59.99497 * 16 14 12 18 18 H 1.48501 * 109.47278 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46934 * 299.99733 * 16 14 12 20 20 C 1.52999 * 117.50107 * 80.55676 * 11 10 9 21 21 C 1.53002 * 117.49851 * 149.21518 * 11 10 9 22 22 O 1.33978 * 125.61806 * 180.28440 * 2 1 3 23 23 H 1.08997 * 109.47516 * 90.02511 * 1 2 3 24 24 H 1.09003 * 109.47288 * 210.02384 * 1 2 3 25 25 H 1.09003 * 109.46953 * 330.02425 * 1 2 3 26 26 H 1.08003 * 126.16704 * 179.97438 * 4 3 2 27 27 H 1.09004 * 109.47344 * 330.00528 * 6 5 4 28 28 H 1.08998 * 109.46992 * 210.00451 * 6 5 4 29 29 H 1.09001 * 109.46840 * 59.99792 * 10 9 7 30 30 H 1.09000 * 109.47129 * 299.99899 * 10 9 7 31 31 H 0.96998 * 120.00543 * 180.02562 * 15 14 12 32 32 H 1.08998 * 117.50651 * 215.00344 * 20 11 10 33 33 H 1.09007 * 117.49575 * 0.02562 * 20 11 10 34 34 H 1.09004 * 117.50100 * 359.97438 * 21 11 10 35 35 H 1.09000 * 117.49932 * 144.97481 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0587 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0015 6 6 4.7937 -1.5551 0.0018 7 6 5.2019 -1.8472 1.4228 8 8 4.5641 -1.3888 2.3410 9 8 6.2734 -2.6174 1.6684 10 6 6.6077 -2.8571 3.0609 11 6 7.8479 -3.7494 3.1414 12 6 7.6787 -5.1475 2.6048 13 1 7.9630 -5.3736 1.5878 14 6 7.1662 -6.1391 3.4141 15 7 6.7084 -5.8406 4.6104 16 14 7.1221 -7.9067 2.8116 17 1 8.5038 -8.3634 2.5157 18 1 6.5291 -8.7731 3.8619 19 1 6.2988 -7.9889 1.5784 20 6 9.2119 -3.0817 2.9555 21 6 8.7768 -3.5613 4.3425 22 8 2.2872 -1.0891 -0.0054 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 4.4157 1.3161 0.0003 27 1 5.6080 -1.0446 -0.5124 28 1 4.5694 -2.4901 -0.5114 29 1 5.7718 -3.3519 3.5552 30 1 6.8108 -1.9067 3.5546 31 1 6.3482 -6.5383 5.1799 32 1 9.9869 -3.6536 2.4451 33 1 9.2257 -2.0066 2.7763 34 1 8.5047 -2.8015 5.0752 35 1 9.2652 -4.4488 4.7448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885338338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:22 Heat of formation + Delta-G solvation = -63.714654 kcal Electronic energy + Delta-G solvation = -19492.670168 eV Core-core repulsion = 16264.681998 eV Total energy + Delta-G solvation = -3227.988170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.39998 -41.40189 -38.64776 -37.02318 -35.83280 -34.31048 -34.02931 -31.61697 -28.85234 -27.51331 -26.76971 -23.64382 -23.01821 -22.56206 -21.61460 -21.20147 -18.83567 -18.49046 -17.98889 -17.65922 -17.46344 -16.87959 -16.56558 -15.70905 -15.51982 -15.19900 -14.86556 -14.28518 -14.04875 -13.95598 -13.74315 -13.52845 -13.35843 -13.15482 -12.92469 -12.80061 -12.42178 -12.34377 -12.09284 -11.78551 -11.71390 -11.66028 -11.43303 -10.79158 -10.50060 -10.10603 -9.76041 -8.14619 -6.26174 0.27237 1.15501 1.42730 1.43658 1.44831 1.51506 1.63732 2.01289 2.42118 3.10017 3.14701 3.40097 3.53008 3.83654 3.98727 4.07913 4.13280 4.34936 4.37371 4.46211 4.59733 4.62305 4.63523 4.64859 4.82333 4.95837 4.97134 4.99665 5.18137 5.34860 5.43919 5.57868 5.65999 5.74212 6.34590 6.64401 6.74158 6.79824 7.43113 8.94105 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.004401 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.421046 B = 6360.268945 C = 6972.463880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.189 3.811 3 N -0.515 5.515 4 C -0.026 4.026 5 C -0.054 4.054 6 C -0.016 4.016 7 C 0.451 3.549 8 O -0.552 6.552 9 O -0.339 6.339 10 C 0.129 3.871 11 C 0.004 3.996 12 C -0.505 4.505 13 H 0.059 0.941 14 C 0.022 3.978 15 N -0.912 5.912 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.271 1.271 20 C -0.174 4.174 21 C -0.150 4.150 22 O -0.214 6.214 23 H 0.117 0.883 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.206 0.794 27 H 0.181 0.819 28 H 0.144 0.856 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.261 0.739 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 9.649 -11.168 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.017 4.017 3 N -0.245 5.245 4 C -0.164 4.164 5 C -0.106 4.106 6 C -0.052 4.052 7 C 0.296 3.704 8 O -0.443 6.443 9 O -0.255 6.255 10 C 0.055 3.945 11 C 0.003 3.997 12 C -0.543 4.543 13 H 0.077 0.923 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.778 3.222 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.211 4.211 21 C -0.188 4.188 22 O -0.102 6.102 23 H 0.136 0.864 24 H 0.119 0.881 25 H 0.130 0.870 26 H 0.223 0.777 27 H 0.198 0.802 28 H 0.162 0.838 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.417 10.241 -10.703 16.567 hybrid contribution 0.163 -1.669 0.565 1.770 sum -7.253 8.572 -10.138 15.128 Atomic orbital electron populations 1.20565 0.78062 1.06296 1.06473 1.27363 0.98165 0.77994 0.98227 1.70452 1.02635 1.31089 1.20363 1.23463 0.95773 0.93032 1.04151 1.22790 0.83420 0.95293 1.09133 1.19785 0.92721 1.02792 0.89942 1.24257 0.77928 0.74824 0.93418 1.90650 1.54019 1.51090 1.48538 1.86503 1.44172 1.62516 1.32279 1.22526 0.98310 0.96636 0.77007 1.18867 0.86432 0.93875 1.00482 1.20643 1.42821 0.92493 0.98344 0.92280 1.25739 0.94286 1.02699 0.95059 1.70102 1.40626 1.34163 1.10026 0.85702 0.78720 0.79869 0.77931 1.19226 1.21284 1.19633 1.23027 0.99297 0.99365 0.99392 1.22492 1.04550 1.00921 0.90812 1.84372 1.17082 1.38684 1.70055 0.86439 0.88149 0.86998 0.77675 0.80151 0.83777 0.94451 0.93269 0.93046 0.89417 0.88833 0.90567 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.51 71.24 0.75 -0.04 16 2 C 0.19 4.79 8.34 88.34 0.74 5.53 16 3 N -0.52 -14.65 11.29 -303.82 -3.43 -18.08 16 4 C -0.03 -0.70 11.80 83.39 0.98 0.29 16 5 C -0.05 -1.49 5.88 24.79 0.15 -1.34 16 6 C -0.02 -0.37 6.36 29.10 0.19 -0.19 16 7 C 0.45 16.40 7.95 71.24 0.57 16.97 16 8 O -0.55 -24.22 15.78 21.94 0.35 -23.87 16 9 O -0.34 -14.10 10.16 -51.40 -0.52 -14.62 16 10 C 0.13 6.10 5.29 71.98 0.38 6.48 16 11 C 0.00 0.19 1.61 -52.93 -0.08 0.10 16 12 C -0.51 -27.13 8.77 25.60 0.22 -26.91 16 13 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 14 C 0.02 1.22 5.39 84.65 0.46 1.67 16 15 N -0.91 -52.05 12.93 21.45 0.28 -51.77 16 16 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.17 -7.07 9.96 30.62 0.30 -6.76 16 21 C -0.15 -6.83 9.43 30.62 0.29 -6.54 16 22 O -0.21 -6.26 10.78 -3.79 -0.04 -6.30 16 23 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.21 4.16 8.06 -2.91 -0.02 4.14 16 27 H 0.18 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.04 2.03 8.13 -2.39 -0.02 2.01 16 30 H 0.05 2.18 8.09 -2.39 -0.02 2.16 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 35 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -72.16 316.78 4.68 -67.48 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.09 Total: 13.17 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.94 Total: -10.74 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -3.15 Total: -69.85 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.22 Total: -44.80 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -72.16 4.68 -67.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885338338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.761 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds