Wall clock time and date at job start Mon Mar 30 2020 00:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41381 * 126.80018 * 2 1 4 4 C 1.35453 * 103.98325 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77842 * 179.97438 * 4 3 2 6 6 C 1.50701 * 115.54983 * 325.59142 * 5 4 3 7 7 O 1.20820 * 120.00354 * 214.32726 * 6 5 4 8 8 O 1.34237 * 120.00099 * 34.32811 * 6 5 4 9 9 C 1.45199 * 117.00208 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46669 * 329.99771 * 9 8 6 11 11 C 1.52997 * 109.47045 * 89.99815 * 9 8 6 12 12 C 1.50700 * 109.47024 * 209.99901 * 9 8 6 13 13 H 1.07999 * 119.99868 * 354.48723 * 12 9 8 14 14 C 1.37882 * 119.99696 * 174.48508 * 12 9 8 15 15 N 1.31508 * 119.99420 * 164.79088 * 14 12 9 16 16 Si 1.86802 * 120.00093 * 344.79074 * 14 12 9 17 17 H 1.48495 * 109.47108 * 270.00257 * 16 14 12 18 18 H 1.48505 * 109.46922 * 30.00049 * 16 14 12 19 19 H 1.48503 * 109.46976 * 150.00121 * 16 14 12 20 20 C 1.53001 * 117.51752 * 111.28753 * 5 4 3 21 21 C 1.52994 * 117.50141 * 179.97438 * 5 4 3 22 22 O 1.34041 * 106.44720 * 0.24340 * 4 3 2 23 23 N 1.20921 * 111.56642 * 359.56048 * 22 4 3 24 24 H 1.09004 * 109.47298 * 90.00106 * 1 2 3 25 25 H 1.09000 * 109.47344 * 210.00005 * 1 2 3 26 26 H 1.08999 * 109.47421 * 330.00408 * 1 2 3 27 27 H 1.07996 * 128.00794 * 359.95967 * 3 2 1 28 28 H 1.09005 * 109.46892 * 173.55362 * 11 9 8 29 29 H 1.09010 * 109.47076 * 293.54540 * 11 9 8 30 30 H 1.08996 * 109.47518 * 53.55319 * 11 9 8 31 31 H 0.96995 * 120.00846 * 354.90163 * 15 14 12 32 32 H 1.09002 * 117.49899 * 214.97357 * 20 5 4 33 33 H 1.09002 * 117.49518 * 359.97438 * 20 5 4 34 34 H 1.09001 * 117.49778 * 359.97438 * 21 5 4 35 35 H 1.08999 * 117.50065 * 145.00310 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3695 0.0003 6 6 4.8952 2.6654 -0.7689 7 8 5.8891 3.0266 -1.3532 8 8 3.7846 3.4186 -0.8049 9 6 3.8500 4.6537 -1.5655 10 1 4.8696 5.0387 -1.5461 11 6 3.4342 4.3839 -3.0130 12 6 2.9180 5.6690 -0.9560 13 1 2.2695 5.3854 -0.1402 14 6 2.8932 6.9599 -1.4398 15 7 1.8957 7.7590 -1.1302 16 14 4.2765 7.5736 -2.5350 17 1 5.3440 8.1733 -1.6949 18 1 4.8360 6.4368 -3.3096 19 1 3.7489 8.5985 -3.4712 20 6 5.7609 1.3033 1.2648 21 6 6.1983 0.5566 0.0017 22 8 3.4537 -0.7253 -0.0046 23 7 2.2868 -1.0423 0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 2.0709 2.1743 -0.0006 28 1 3.3726 5.3275 -3.5552 29 1 4.1729 3.7389 -3.4890 30 1 2.4610 3.8932 -3.0260 31 1 1.1414 7.4195 -0.6236 32 1 6.3208 2.1970 1.5404 33 1 5.3856 0.7082 2.0974 34 1 6.1110 -0.5299 0.0033 35 1 7.0457 0.9596 -0.5529 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892691145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:30 Heat of formation + Delta-G solvation = -1.915133 kcal Electronic energy + Delta-G solvation = -20330.215754 eV Core-core repulsion = 17104.907411 eV Total energy + Delta-G solvation = -3225.308342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.84765 -40.21152 -37.45378 -35.76363 -34.70000 -33.34304 -31.41359 -30.50348 -28.64972 -25.61674 -24.84181 -23.26785 -22.60148 -21.65541 -20.43925 -19.22802 -18.06754 -17.56177 -17.49797 -16.47287 -16.14415 -15.35434 -14.75258 -14.31481 -13.79774 -13.39355 -13.30945 -13.15732 -12.97179 -12.85447 -12.45104 -12.42072 -11.79996 -11.75097 -11.53225 -11.42171 -11.09766 -10.85473 -10.70485 -10.26504 -10.16155 -9.92033 -9.89039 -9.71186 -9.09125 -8.95953 -8.50131 -6.69524 -4.32428 1.42692 2.27426 2.49823 2.83822 3.23117 3.30990 3.35132 3.48286 3.73213 4.18195 4.26617 4.32701 4.64729 4.70038 4.99818 5.05620 5.14001 5.34120 5.42360 5.47465 5.57715 5.59150 5.69398 5.82778 5.92052 5.96951 6.12332 6.31274 6.36686 6.41795 6.59778 7.03627 7.23482 7.69972 8.15766 8.30346 8.32158 8.74297 9.35284 10.72161 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.006366 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.260539 B = 4397.570008 C = 5288.555277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.016 3.984 3 C -0.195 4.195 4 C -0.001 4.001 5 C -0.070 4.070 6 C 0.500 3.500 7 O -0.508 6.508 8 O -0.335 6.335 9 C 0.195 3.805 10 H 0.041 0.959 11 C -0.164 4.164 12 C -0.608 4.608 13 H 0.070 0.930 14 C 0.042 3.958 15 N -0.893 5.893 16 Si 1.033 2.967 17 H -0.280 1.280 18 H -0.268 1.268 19 H -0.279 1.279 20 C -0.129 4.129 21 C -0.132 4.132 22 O 0.097 5.903 23 N -0.370 5.370 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.187 0.813 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.273 0.727 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -14.060 2.932 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 C -0.216 4.216 4 C -0.064 4.064 5 C -0.073 4.073 6 C 0.341 3.659 7 O -0.398 6.398 8 O -0.250 6.250 9 C 0.142 3.858 10 H 0.058 0.942 11 C -0.222 4.222 12 C -0.645 4.645 13 H 0.088 0.912 14 C -0.164 4.164 15 N -0.525 5.525 16 Si 0.860 3.140 17 H -0.206 1.206 18 H -0.194 1.194 19 H -0.205 1.205 20 C -0.167 4.167 21 C -0.169 4.169 22 O 0.031 5.969 23 N -0.076 5.076 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.205 0.795 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.916 -13.863 1.953 14.537 hybrid contribution -0.776 -0.372 0.677 1.095 sum 3.140 -14.235 2.630 14.812 Atomic orbital electron populations 1.20168 0.85848 1.03707 1.03487 1.23636 0.99110 0.88803 1.02700 1.22781 0.90440 1.02108 1.06279 1.22716 0.95603 0.83399 1.04723 1.18851 0.88621 0.93842 1.05944 1.21567 0.82515 0.83965 0.77819 1.90619 1.35137 1.71487 1.42536 1.86517 1.36069 1.35253 1.67172 1.21023 0.98745 0.78190 0.87860 0.94156 1.22525 1.00373 1.01401 0.97858 1.21910 1.24970 0.95491 1.22135 0.91217 1.25646 1.00485 0.92563 0.97705 1.70807 1.07127 1.38508 1.36078 0.84257 0.75935 0.76653 0.77192 1.20650 1.19380 1.20470 1.23273 0.99045 1.03678 0.90674 1.23272 0.94408 0.99250 0.99959 1.84738 1.21783 1.22159 1.68249 1.73795 0.89187 1.23957 1.20616 0.90114 0.90779 0.89701 0.79540 0.91328 0.95007 0.92695 0.91713 0.86663 0.86902 0.86676 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.47 36.00 0.38 -0.45 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 C -0.20 -3.15 10.11 -39.38 -0.40 -3.55 16 4 C 0.00 -0.02 6.74 -35.30 -0.24 -0.26 16 5 C -0.07 -1.06 2.57 -156.81 -0.40 -1.46 16 6 C 0.50 9.77 7.46 36.01 0.27 10.04 16 7 O -0.51 -10.82 15.47 -18.74 -0.29 -11.11 16 8 O -0.33 -7.38 7.49 -39.28 -0.29 -7.67 16 9 C 0.20 4.77 2.11 -27.88 -0.06 4.71 16 10 H 0.04 1.02 5.79 -51.93 -0.30 0.72 16 11 C -0.16 -3.68 8.83 37.16 0.33 -3.35 16 12 C -0.61 -16.70 9.18 -34.44 -0.32 -17.01 16 13 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 14 C 0.04 1.18 5.33 -17.82 -0.09 1.09 16 15 N -0.89 -26.25 13.69 55.43 0.76 -25.49 16 16 Si 1.03 24.27 26.17 -169.99 -4.45 19.82 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -5.91 5.54 56.52 0.31 -5.59 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.13 -1.49 9.94 -26.67 -0.27 -1.76 16 21 C -0.13 -1.52 9.70 -26.68 -0.26 -1.78 16 22 O 0.10 1.47 10.96 17.17 0.19 1.66 16 23 N -0.37 -5.79 12.07 33.42 0.40 -5.38 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.19 3.24 6.69 -52.49 -0.35 2.89 16 28 H 0.07 1.53 5.06 -51.93 -0.26 1.27 16 29 H 0.03 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 32 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 1.10 7.99 -51.93 -0.41 0.68 16 35 H 0.12 1.40 7.67 -51.93 -0.40 1.01 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -30.86 302.35 -5.14 -36.00 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.35 Total: 1.77 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.66 Total: -14.16 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 1.16 Total: -30.88 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.40 Total: -17.12 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.45 Total: 19.82 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.86 -5.14 -36.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.085 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds