Wall clock time and date at job start Mon Mar 30 2020 00:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00341 * 2 1 4 4 H 1.48497 * 109.47007 * 269.99970 * 3 2 1 5 5 H 1.48503 * 109.46794 * 29.99492 * 3 2 1 6 6 H 1.48491 * 109.47037 * 149.99521 * 3 2 1 7 7 C 1.37880 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47154 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00124 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99945 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00089 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47009 * 179.97438 * 14 12 11 16 16 N 1.46507 * 109.47241 * 180.02562 * 15 14 12 17 17 C 1.35763 * 119.62574 * 90.00014 * 16 15 14 18 18 C 1.35346 * 120.69997 * 180.27933 * 17 16 15 19 19 C 1.40202 * 119.94860 * 359.43664 * 18 17 16 20 20 C 1.36395 * 119.26120 * 0.57668 * 19 18 17 21 21 C 1.34664 * 119.61981 * 270.02413 * 16 15 14 22 22 O 1.22055 * 119.98569 * 359.97438 * 21 16 15 23 23 H 0.96994 * 119.99901 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47243 * 59.99707 * 9 7 2 25 25 H 1.09006 * 109.47257 * 299.99233 * 9 7 2 26 26 H 1.09003 * 109.46939 * 59.99508 * 10 9 7 27 27 H 1.08997 * 109.46716 * 299.99792 * 10 9 7 28 28 H 1.09004 * 109.46770 * 60.00306 * 14 12 11 29 29 H 1.08991 * 109.47572 * 300.00207 * 14 12 11 30 30 H 1.08991 * 109.47264 * 60.00383 * 15 14 12 31 31 H 1.09001 * 109.47142 * 300.00018 * 15 14 12 32 32 H 1.08002 * 119.64669 * 359.97438 * 17 16 15 33 33 H 1.07996 * 120.02410 * 179.69320 * 18 17 16 34 34 H 1.08002 * 120.36615 * 180.31976 * 19 18 17 35 35 H 1.08002 * 120.34395 * 179.74309 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2502 -6.0453 0.0007 13 8 3.4568 -5.9821 -0.0007 14 6 1.5660 -7.3881 0.0019 15 6 2.6198 -8.4974 0.0004 16 7 1.9547 -9.8028 0.0009 17 6 1.6486 -10.4005 -1.1790 18 6 1.0292 -11.6037 -1.2039 19 6 0.7079 -12.2505 -0.0022 20 6 1.0158 -11.6481 1.1822 21 6 1.6534 -10.3958 1.1718 22 8 1.9351 -9.8458 2.2244 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8904 26 1 2.8719 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.9423 -7.4788 -0.8875 29 1 0.9442 -7.4783 0.8924 30 1 3.2438 -8.4069 0.8894 31 1 3.2412 -8.4070 -0.8905 32 1 1.8977 -9.9084 -2.1076 33 1 0.7864 -12.0670 -2.1487 34 1 0.2183 -13.2130 -0.0142 35 1 0.7725 -12.1288 2.1182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919256385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:17 Heat of formation + Delta-G solvation = -99.462509 kcal Electronic energy + Delta-G solvation = -18851.169318 eV Core-core repulsion = 15621.631004 eV Total energy + Delta-G solvation = -3229.538314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63672 -40.02300 -37.14617 -36.43333 -35.27018 -33.38076 -31.63609 -30.27313 -30.02504 -26.12868 -24.77895 -23.98089 -22.61323 -21.11131 -20.42184 -18.16132 -17.61440 -17.16104 -16.62915 -16.30638 -16.23558 -16.07442 -15.37233 -14.76767 -14.53384 -14.44699 -14.27898 -13.18411 -13.02562 -12.69432 -12.52505 -12.37776 -12.28042 -12.04298 -11.50558 -11.26303 -11.08164 -10.79131 -10.72695 -10.54154 -10.29550 -10.16343 -9.69733 -9.65566 -9.32622 -8.46577 -8.28316 -6.12506 -4.17123 0.51586 1.58427 2.22802 2.44300 3.13901 3.27230 3.33453 3.37249 3.41718 4.24642 4.32624 4.37509 4.46357 4.57468 4.78618 4.91883 4.97241 5.02833 5.24121 5.24446 5.45293 5.55982 5.66549 5.77404 5.95545 6.03422 6.05622 6.20019 6.59453 6.79149 6.91018 7.52274 7.59063 7.78420 7.83430 8.09417 8.21646 8.88420 9.47463 10.99049 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.050738 B = 0.002853 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.724391 B = 9813.050658 C = 9845.597465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.355 6.355 12 C 0.464 3.536 13 O -0.518 6.518 14 C -0.131 4.131 15 C 0.102 3.898 16 N -0.496 5.496 17 C 0.136 3.864 18 C -0.236 4.236 19 C -0.017 4.017 20 C -0.244 4.244 21 C 0.510 3.490 22 O -0.546 6.546 23 H 0.264 0.736 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 -24.560 -4.757 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.271 6.271 12 C 0.306 3.694 13 O -0.408 6.408 14 C -0.170 4.170 15 C -0.019 4.019 16 N -0.206 5.206 17 C 0.009 3.991 18 C -0.259 4.259 19 C -0.039 4.039 20 C -0.266 4.266 21 C 0.312 3.688 22 O -0.428 6.428 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.060 -23.964 -4.051 24.327 hybrid contribution 0.420 0.918 -0.142 1.019 sum 1.480 -23.046 -4.193 23.471 Atomic orbital electron populations 1.69972 1.06112 1.27040 1.49713 1.24989 0.94924 0.99424 0.94824 0.86459 0.79779 0.82768 0.78241 1.20466 1.21017 1.19700 1.20975 0.93184 0.90090 1.52290 0.92231 1.19180 0.94194 0.89021 0.98910 1.23690 0.96408 0.78573 1.01069 1.86522 1.42407 1.15841 1.82307 1.23058 0.86363 0.87125 0.72844 1.90650 1.15658 1.88399 1.46128 1.21596 0.99526 0.89069 1.06773 1.21775 0.94426 0.78785 1.06944 1.45605 1.49094 1.18922 1.07003 1.22056 0.93580 0.93872 0.89642 1.20669 1.08752 0.96869 0.99632 1.21454 0.91995 0.98487 0.91958 1.22149 1.07750 0.96492 1.00193 1.17243 0.81444 0.87309 0.82819 1.91002 1.55772 1.66524 1.29521 0.92672 0.95359 0.95301 0.92156 0.92181 0.87352 0.86954 0.86968 0.87863 0.81915 0.83722 0.84838 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.07 1.66 5.40 37.16 0.20 1.86 16 11 O -0.35 -6.99 10.22 -39.25 -0.40 -7.40 16 12 C 0.46 7.70 7.96 36.01 0.29 7.98 16 13 O -0.52 -9.71 15.73 -18.75 -0.29 -10.00 16 14 C -0.13 -1.54 6.13 -27.88 -0.17 -1.71 16 15 C 0.10 1.08 4.62 -4.04 -0.02 1.06 16 16 N -0.50 -4.78 2.58 -119.77 -0.31 -5.09 16 17 C 0.14 0.83 10.28 -16.84 -0.17 0.66 16 18 C -0.24 -1.25 10.01 -39.88 -0.40 -1.65 16 19 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 20 C -0.24 -2.27 9.99 -39.38 -0.39 -2.66 16 21 C 0.51 6.29 7.41 -15.44 -0.11 6.18 16 22 O -0.55 -9.09 16.64 4.87 0.08 -9.01 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 27 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.11 1.46 7.35 -51.93 -0.38 1.08 16 31 H 0.10 0.88 7.97 -51.93 -0.41 0.46 16 32 H 0.16 0.48 8.04 -52.49 -0.42 0.06 16 33 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 34 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -34.78 313.56 -6.79 -41.57 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -4.56 Total: -3.68 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.74 Total: -1.83 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.43 Total: -30.76 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.62 Total: -26.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.78 -6.79 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919256385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.897 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds