Wall clock time and date at job start Mon Mar 30 2020 00:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 112.85187 * 2 1 4 4 O 1.21283 * 119.99803 * 230.33082 * 3 2 1 5 5 N 1.34777 * 119.99675 * 50.60958 * 3 2 1 6 6 C 1.46497 * 119.99525 * 179.72583 * 5 3 2 7 7 H 1.09007 * 109.47747 * 35.00142 * 6 5 3 8 8 C 1.50707 * 109.46997 * 154.99586 * 6 5 3 9 9 H 1.07998 * 120.00049 * 359.97438 * 8 6 5 10 10 C 1.37881 * 119.99925 * 179.97438 * 8 6 5 11 11 N 1.31517 * 119.99779 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 119.99556 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47510 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47200 * 120.00398 * 12 10 8 15 15 H 1.48505 * 109.46878 * 239.99713 * 12 10 8 16 16 C 1.53001 * 109.47313 * 274.99614 * 6 5 3 17 17 F 1.39897 * 109.46983 * 59.99976 * 16 6 5 18 18 F 1.39904 * 109.47348 * 180.02562 * 16 6 5 19 19 F 1.39897 * 109.46852 * 300.00259 * 16 6 5 20 20 C 1.53780 * 113.61357 * 131.19758 * 2 1 3 21 21 C 1.53955 * 87.02432 * 89.22792 * 20 2 1 22 22 C 1.53784 * 113.61623 * 228.80160 * 2 1 3 23 23 H 1.09004 * 109.46923 * 69.66960 * 1 2 3 24 24 H 1.09006 * 109.47182 * 189.66680 * 1 2 3 25 25 H 1.08996 * 109.47434 * 309.66792 * 1 2 3 26 26 H 0.97000 * 119.99894 * 359.71837 * 5 3 2 27 27 H 0.97001 * 119.99544 * 179.97438 * 11 10 8 28 28 H 1.08998 * 113.61710 * 203.74764 * 20 2 1 29 29 H 1.09007 * 113.61355 * 334.65236 * 20 2 1 30 30 H 1.09003 * 113.53772 * 270.81713 * 21 20 2 31 31 H 1.09000 * 113.74578 * 139.94010 * 21 20 2 32 32 H 1.09001 * 113.61239 * 25.34896 * 22 2 1 33 33 H 1.08996 * 113.61743 * 156.25345 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9686 1.6871 -0.8085 5 7 1.6943 2.2973 0.9021 6 6 2.2675 3.6455 0.9059 7 1 2.4854 3.9507 -0.1176 8 6 1.2829 4.6082 1.5182 9 1 0.3258 4.2516 1.8690 10 6 1.6042 5.9444 1.6306 11 7 2.7696 6.3787 1.2030 12 14 0.3840 7.1375 2.3902 13 1 -0.8441 6.4035 2.7879 14 1 0.9918 7.7718 3.5875 15 1 0.0342 8.1861 1.3985 16 6 3.5599 3.6479 1.7249 17 9 4.4738 2.7541 1.1565 18 9 4.1070 4.9355 1.7291 19 9 3.2801 3.2563 3.0385 20 6 2.1459 -0.9281 1.0602 21 6 2.0949 -2.0421 -0.0012 22 6 2.1460 -0.9281 -1.0602 23 1 -0.3633 0.3571 -0.9637 24 1 -0.3634 -1.0131 0.1726 25 1 -0.3634 0.6560 0.7910 26 1 1.0117 2.0586 1.5487 27 1 2.9954 7.3188 1.2817 28 1 3.1584 -0.6478 1.3507 29 1 1.4938 -1.1080 1.9150 30 1 1.1593 -2.6014 -0.0006 31 1 2.9737 -2.6870 -0.0032 32 1 1.4939 -1.1080 -1.9149 33 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928807065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:25 Heat of formation + Delta-G solvation = -183.155383 kcal Electronic energy + Delta-G solvation = -21694.363264 eV Core-core repulsion = 17919.339015 eV Total energy + Delta-G solvation = -3775.024249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.45805 -48.09552 -47.76459 -41.47860 -38.75381 -36.47275 -34.48989 -31.22890 -29.59873 -26.65406 -26.56435 -25.74541 -23.49901 -21.80535 -20.07292 -18.97382 -18.89108 -18.65707 -18.27535 -17.47246 -16.91026 -16.32627 -16.10827 -15.35373 -15.15434 -15.01473 -14.67265 -14.50968 -14.34526 -14.29634 -14.08807 -13.96072 -13.60487 -13.22775 -13.14788 -13.05537 -12.74779 -12.67803 -12.21661 -12.17679 -12.04186 -11.57599 -11.37894 -11.16856 -10.71946 -10.50716 -10.06108 -8.23544 -6.54789 1.44661 1.45693 1.59152 1.66988 2.21799 2.38962 2.52012 2.91692 3.49807 3.60855 3.71364 3.78980 3.88669 3.90808 4.05267 4.21521 4.61824 4.72162 4.79219 4.87440 4.90712 4.99076 5.06935 5.11979 5.21566 5.33280 5.42425 5.51810 5.59458 5.63414 6.50734 6.74101 7.15012 7.37786 8.69662 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.007050 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.394968 B = 3970.647749 C = 4452.309154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.511 3.489 4 O -0.585 6.585 5 N -0.703 5.703 6 C 0.249 3.751 7 H 0.043 0.957 8 C -0.560 4.560 9 H 0.093 0.907 10 C 0.013 3.987 11 N -0.877 5.877 12 Si 0.985 3.015 13 H -0.253 1.253 14 H -0.281 1.281 15 H -0.277 1.277 16 C 0.414 3.586 17 F -0.221 7.221 18 F -0.151 7.151 19 F -0.202 7.202 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.121 4.121 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.412 0.588 27 H 0.268 0.732 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 -12.927 1.195 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.115 4.115 3 C 0.299 3.701 4 O -0.465 6.465 5 N -0.353 5.353 6 C 0.142 3.858 7 H 0.061 0.939 8 C -0.597 4.597 9 H 0.111 0.889 10 C -0.192 4.192 11 N -0.511 5.511 12 Si 0.808 3.192 13 H -0.177 1.177 14 H -0.206 1.206 15 H -0.203 1.203 16 C 0.358 3.642 17 F -0.203 7.203 18 F -0.132 7.132 19 F -0.184 7.184 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.159 4.159 23 H 0.078 0.922 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.249 0.751 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.620 -12.543 0.613 13.758 hybrid contribution 0.247 1.140 0.603 1.313 sum -5.373 -11.403 1.215 12.664 Atomic orbital electron populations 1.21612 0.88857 1.04568 1.02786 1.22368 0.98845 0.88430 1.01856 1.21477 0.81373 0.87762 0.79486 1.90642 1.34135 1.80958 1.40759 1.45983 1.42326 1.11446 1.35532 1.19320 0.88287 0.82604 0.95638 0.93943 1.21270 1.02548 0.92070 1.43803 0.88880 1.26051 0.97313 1.00465 0.95406 1.70549 1.20992 1.15993 1.43558 0.85087 0.78589 0.77856 0.77654 1.17668 1.20650 1.20295 1.23319 0.88589 0.73364 0.78971 1.93055 1.71670 1.70399 1.85144 1.93376 1.87531 1.36153 1.96165 1.92981 1.93980 1.91238 1.40214 1.22968 1.00528 0.95298 0.97265 1.22827 1.04001 0.95194 0.93485 1.22876 1.00824 0.95171 0.97045 0.92162 0.88186 0.91516 0.75133 0.92171 0.92245 0.88272 0.86934 0.90423 0.89756 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.98 71.98 0.65 -1.82 16 2 C -0.11 -3.09 1.24 -52.40 -0.07 -3.15 16 3 C 0.51 20.60 6.44 87.66 0.56 21.16 16 4 O -0.59 -29.12 14.48 -3.04 -0.04 -29.17 16 5 N -0.70 -29.12 4.88 -446.08 -2.18 -31.30 16 6 C 0.25 12.79 2.21 44.25 0.10 12.89 16 7 H 0.04 2.54 7.58 -2.38 -0.02 2.52 16 8 C -0.56 -28.62 8.47 25.60 0.22 -28.40 16 9 H 0.09 4.36 7.74 -2.91 -0.02 4.33 16 10 C 0.01 0.66 5.20 84.66 0.44 1.10 16 11 N -0.88 -49.37 9.50 21.45 0.20 -49.16 16 12 Si 0.98 40.67 29.54 68.60 2.03 42.70 16 13 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 14 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 16 C 0.41 22.00 2.81 71.98 0.20 22.20 16 17 F -0.22 -11.77 15.68 44.97 0.70 -11.06 16 18 F -0.15 -8.72 12.91 44.97 0.58 -8.14 16 19 F -0.20 -10.09 16.94 44.97 0.76 -9.32 16 20 C -0.12 -2.86 7.21 31.18 0.22 -2.63 16 21 C -0.12 -2.14 7.74 31.18 0.24 -1.90 16 22 C -0.12 -3.08 6.99 31.12 0.22 -2.86 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.10 1.37 7.34 -2.38 -0.02 1.35 16 25 H 0.07 1.34 7.12 -2.39 -0.02 1.32 16 26 H 0.41 14.39 7.53 -92.71 -0.70 13.69 16 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.06 1.69 8.09 -2.39 -0.02 1.67 16 29 H 0.10 1.81 8.10 -2.38 -0.02 1.79 16 30 H 0.11 1.39 7.64 -2.39 -0.02 1.37 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.06 1.99 7.45 -2.39 -0.02 1.98 16 Total: -1.00 -66.70 283.82 5.29 -61.41 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.44 Total: 17.46 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 2.79 Total: 16.59 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.97 Total: -80.46 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.04 Total: -29.17 kcal Atomic # 9 Polarization: -30.58 SS G_CDS: 2.05 Total: -28.53 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -66.70 5.29 -61.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.743 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds