Wall clock time and date at job start Mon Mar 30 2020 00:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38354 * 120.82639 * 2 1 4 4 C 1.38331 * 119.46479 * 179.72769 * 3 2 1 5 5 N 1.31914 * 121.19672 * 0.56206 * 4 3 2 6 6 C 1.32197 * 121.81110 * 359.71689 * 5 4 3 7 7 O 1.35407 * 119.81175 * 180.02562 * 6 5 4 8 8 C 1.40016 * 120.82775 * 180.28212 * 2 1 3 9 9 C 1.47388 * 120.60179 * 0.02562 * 8 2 1 10 10 O 1.21514 * 119.99342 * 90.00464 * 9 8 2 11 11 O 1.34748 * 120.00223 * 270.00646 * 9 8 2 12 12 C 1.45203 * 116.99977 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47269 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47143 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47096 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99880 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00012 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99880 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99978 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46877 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46951 * 119.99831 * 19 17 15 22 22 H 1.48504 * 109.47009 * 239.99824 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.72017 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72117 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72098 * 1 2 3 26 26 H 1.07994 * 120.26846 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.40219 * 180.27545 * 4 3 2 28 28 H 0.96699 * 114.00282 * 269.98136 * 7 6 5 29 29 H 1.09000 * 109.47270 * 299.99824 * 12 11 9 30 30 H 1.08998 * 109.47280 * 59.99510 * 12 11 9 31 31 H 1.08994 * 109.46900 * 299.99648 * 13 12 11 32 32 H 1.09005 * 109.46741 * 60.00083 * 13 12 11 33 33 H 1.08996 * 109.47241 * 300.00409 * 14 13 12 34 34 H 1.09005 * 109.46840 * 60.00626 * 14 13 12 35 35 H 0.97003 * 119.99850 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1881 0.0000 4 6 3.5989 1.1552 0.0057 5 7 4.2552 0.0109 0.0001 6 6 3.6274 -1.1524 -0.0056 7 8 4.3417 -2.3028 -0.0107 8 6 2.2246 -1.2023 -0.0059 9 6 1.5197 -2.4967 -0.0129 10 8 1.2297 -3.0248 -1.0681 11 8 1.1969 -3.0944 1.1509 12 6 0.5040 -4.3677 1.0680 13 6 0.2241 -4.8889 2.4790 14 6 -0.5066 -6.2303 2.3917 15 6 -0.7829 -6.7433 3.7815 16 1 -0.4691 -6.1697 4.6411 17 6 -1.4362 -7.9448 3.9556 18 7 -1.8188 -8.6430 2.9088 19 14 -1.7793 -8.5803 5.6783 20 1 -1.2520 -7.6151 6.6761 21 1 -3.2441 -8.7363 5.8658 22 1 -1.1139 -9.8951 5.8625 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5182 25 1 -0.3633 0.8925 -0.5095 26 1 1.6940 2.1335 0.0004 27 1 4.1513 2.0833 0.0102 28 1 4.5493 -2.6330 -0.8956 29 1 -0.4380 -4.2348 0.5359 30 1 1.1255 -5.0854 0.5326 31 1 1.1662 -5.0219 3.0107 32 1 -0.3974 -4.1712 3.0147 33 1 -1.4488 -6.0969 1.8600 34 1 0.1145 -6.9481 1.8558 35 1 -2.2788 -9.4882 3.0313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116682819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:49 Heat of formation + Delta-G solvation = -132.048349 kcal Electronic energy + Delta-G solvation = -19210.360208 eV Core-core repulsion = 15979.408866 eV Total energy + Delta-G solvation = -3230.951342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.20719 -40.89904 -38.41962 -37.92413 -35.97552 -35.10478 -33.71458 -31.82760 -29.36766 -28.90490 -26.21625 -24.89838 -23.48043 -22.30087 -22.19017 -19.65245 -19.20831 -18.67502 -18.52460 -17.87279 -17.28365 -16.97928 -16.50505 -15.88630 -15.54070 -15.01186 -14.85089 -14.32792 -14.06235 -13.99673 -13.84384 -13.79658 -13.66662 -13.04231 -12.89473 -12.86959 -12.54002 -12.46394 -12.15788 -12.07668 -11.55274 -11.49004 -11.26594 -10.77107 -10.64520 -10.59233 -10.10734 -8.23275 -6.34795 -0.40866 -0.04057 0.78302 1.40518 1.41118 1.48450 1.55501 2.29113 2.40367 2.57014 3.10658 3.32438 3.49847 3.63066 3.86024 3.94304 3.97393 4.18190 4.25381 4.35294 4.52020 4.62067 4.66900 4.74406 4.77321 5.00470 5.02522 5.06965 5.24279 5.42553 5.46327 5.60634 5.78051 6.16983 6.32700 6.42522 6.71411 6.80704 7.34773 8.89121 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.034120 B = 0.003405 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.433225 B = 8220.251756 C = 8340.554894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.008 3.992 3 C -0.168 4.168 4 C 0.149 3.851 5 N -0.525 5.525 6 C 0.344 3.656 7 O -0.493 6.493 8 C -0.207 4.207 9 C 0.528 3.472 10 O -0.525 6.525 11 O -0.350 6.350 12 C 0.076 3.924 13 C -0.094 4.094 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.096 0.904 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.195 0.805 27 H 0.211 0.789 28 H 0.421 0.579 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.001 0.999 34 H -0.003 1.003 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 23.602 -7.132 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.001 3.999 3 C -0.187 4.187 4 C -0.007 4.007 5 N -0.245 5.245 6 C 0.165 3.835 7 O -0.304 6.304 8 C -0.212 4.212 9 C 0.371 3.629 10 O -0.415 6.415 11 O -0.266 6.266 12 C 0.003 3.997 13 C -0.132 4.132 14 C -0.010 4.010 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.793 3.207 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.204 1.204 23 H 0.115 0.885 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.212 0.788 27 H 0.228 0.772 28 H 0.283 0.717 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.705 23.217 -6.886 25.734 hybrid contribution -1.046 -1.416 -0.045 1.761 sum 7.658 21.801 -6.930 24.124 Atomic orbital electron populations 1.21089 0.88121 1.04739 1.04617 1.20676 0.98094 0.90636 0.90542 1.22466 0.95177 0.99124 1.01906 1.23589 0.92446 0.95451 0.89215 1.67382 1.42165 0.98504 1.16457 1.19141 0.84860 0.86366 0.93137 1.84675 1.74463 1.35389 1.35839 1.20256 0.94172 0.92012 1.14723 1.21153 0.75095 0.84827 0.81798 1.90850 1.52056 1.65423 1.33136 1.86659 1.69242 1.36676 1.34033 1.23263 0.95833 0.80644 1.00010 1.21476 1.00948 0.97609 0.93147 1.18932 0.94347 0.91220 0.96521 1.21638 1.37501 1.05677 0.93344 0.91813 1.26002 0.95279 0.97016 1.01545 1.70104 1.40571 1.14929 1.31657 0.85333 0.77982 0.78248 0.79088 1.18494 1.20208 1.20396 0.88526 0.93156 0.86279 0.78790 0.77229 0.71671 0.91105 0.91730 0.91891 0.91293 0.98110 0.98444 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.69 71.24 0.69 -1.32 16 2 C 0.01 0.15 5.95 -19.40 -0.12 0.04 16 3 C -0.17 -1.86 9.79 22.32 0.22 -1.64 16 4 C 0.15 1.92 11.17 84.70 0.95 2.86 16 5 N -0.53 -11.51 10.37 -307.99 -3.19 -14.70 16 6 C 0.34 8.93 7.77 85.16 0.66 9.59 16 7 O -0.49 -12.92 13.02 -87.01 -1.13 -14.05 16 8 C -0.21 -5.51 5.78 -19.92 -0.12 -5.62 16 9 C 0.53 17.52 5.56 70.23 0.39 17.91 16 10 O -0.53 -19.57 16.90 19.79 0.33 -19.24 16 11 O -0.35 -12.66 10.23 -56.59 -0.58 -13.24 16 12 C 0.08 2.92 5.48 71.98 0.39 3.32 16 13 C -0.09 -4.03 5.53 30.59 0.17 -3.87 16 14 C 0.03 1.44 4.97 29.85 0.15 1.58 16 15 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 16 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 19 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.05 7.19 -2.39 -0.02 1.03 16 25 H 0.12 0.97 8.10 -2.38 -0.02 0.95 16 26 H 0.19 0.37 8.06 -2.91 -0.02 0.34 16 27 H 0.21 0.78 8.06 -2.91 -0.02 0.76 16 28 H 0.42 7.21 9.06 -74.06 -0.67 6.54 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -75.96 314.42 2.26 -73.70 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.44 Total: 5.36 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.08 Total: -7.57 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -2.91 Total: -71.26 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -1.38 Total: -46.52 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -75.96 2.26 -73.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116682819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.350 kcal (2) G-P(sol) polarization free energy of solvation -75.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds