Wall clock time and date at job start Mon Mar 30 2020 00:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46950 * 120.00195 * 3 2 1 7 7 C 1.37872 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00189 * 0.02562 * 7 2 1 10 10 O 1.42898 * 113.28318 * 313.06342 * 9 7 2 11 11 C 1.53502 * 114.20949 * 179.97438 * 9 7 2 12 12 N 1.47071 * 87.98349 * 220.14690 * 11 9 7 13 13 C 1.34773 * 136.05617 * 207.07832 * 12 11 9 14 14 O 1.21292 * 120.00026 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00202 * 180.02562 * 13 12 11 16 16 H 1.09004 * 115.52370 * 82.30824 * 15 13 12 17 17 C 1.53038 * 117.45751 * 296.82028 * 15 13 12 18 18 H 1.08999 * 119.43569 * 139.64763 * 17 15 13 19 19 C 1.54424 * 117.96438 * 345.46032 * 17 15 13 20 20 C 1.54910 * 103.66349 * 319.33446 * 19 17 15 21 21 C 1.52489 * 102.93781 * 322.17894 * 20 19 17 22 22 O 1.20760 * 127.57350 * 218.37708 * 21 20 19 23 23 C 1.51821 * 104.84619 * 38.32883 * 21 20 19 24 24 H 1.09010 * 117.81162 * 195.88793 * 23 21 20 25 25 C 1.47069 * 87.88636 * 27.34251 * 12 11 9 26 26 H 0.97004 * 119.99696 * 359.97438 * 1 2 3 27 27 H 0.96703 * 113.99940 * 46.93137 * 10 9 7 28 28 H 1.08993 * 113.47135 * 105.36464 * 11 9 7 29 29 H 1.08999 * 113.51509 * 334.93510 * 11 9 7 30 30 H 1.09003 * 110.58759 * 77.87710 * 19 17 15 31 31 H 1.09002 * 110.58772 * 200.79066 * 19 17 15 32 32 H 1.08998 * 110.71664 * 80.53720 * 20 19 17 33 33 H 1.08995 * 110.72359 * 203.81754 * 20 19 17 34 34 H 1.08996 * 113.46788 * 87.43838 * 25 12 11 35 35 H 1.09000 * 113.46471 * 217.87773 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.1920 -2.5399 0.9591 11 6 2.1487 -3.7443 0.0005 12 7 1.2071 -4.3593 -0.9471 13 6 0.8317 -5.6139 -1.2659 14 8 1.3280 -6.5598 -0.6914 15 6 -0.2047 -5.8414 -2.3360 16 1 0.1663 -5.8218 -3.3608 17 6 -1.6112 -5.2935 -2.0840 18 1 -2.1598 -4.8289 -2.9033 19 6 -1.9726 -4.8596 -0.6468 20 6 -1.3306 -5.9565 0.2389 21 6 -1.5569 -7.2270 -0.5734 22 8 -1.8419 -8.3249 -0.1591 23 6 -1.3463 -6.8082 -2.0174 24 1 -1.7087 -7.4763 -2.7988 25 6 0.8604 -3.0033 -1.3986 26 1 -0.4850 0.8401 0.0004 27 1 -0.3716 -1.7542 0.9562 28 1 2.1877 -4.2513 0.9645 29 1 3.1374 -3.5676 -0.4229 30 1 -1.5418 -3.8841 -0.4211 31 1 -3.0541 -4.8426 -0.5120 32 1 -0.2653 -5.7692 0.3731 33 1 -1.8366 -6.0195 1.2023 34 1 1.5092 -2.6304 -2.1911 35 1 -0.1983 -2.8791 -1.6264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119629742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:24 Heat of formation + Delta-G solvation = -40.778722 kcal Electronic energy + Delta-G solvation = -21015.422445 eV Core-core repulsion = 17788.428851 eV Total energy + Delta-G solvation = -3226.993594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15725 -39.10996 -37.70173 -36.60918 -34.09050 -32.26435 -31.12277 -28.97494 -26.38164 -25.89011 -25.14268 -23.78971 -20.83440 -19.87962 -19.19444 -17.95899 -17.58713 -16.82451 -16.05915 -15.70751 -15.36571 -14.97923 -14.34310 -14.21249 -14.10522 -13.93352 -13.12877 -13.02143 -12.72203 -12.46414 -12.17972 -11.99601 -11.60192 -11.34289 -11.12981 -11.11341 -11.03544 -10.56772 -10.42268 -10.33388 -10.15272 -9.74466 -9.40301 -9.06365 -8.84663 -8.48163 -7.97097 -6.47835 -4.57590 1.93868 2.96780 3.11417 3.17945 3.19436 3.31856 3.70325 4.12221 4.17503 4.43163 4.56646 4.71628 4.81194 5.03920 5.13423 5.34586 5.46513 5.48768 5.61786 5.71540 5.84173 5.92428 6.07239 6.09972 6.24542 6.31260 6.35596 6.46595 6.53597 6.62630 7.03173 7.55938 7.65112 7.72756 8.34982 8.45654 8.60733 9.13892 9.39672 10.58780 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.036073 B = 0.005798 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.020262 B = 4828.256184 C = 5025.770293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.243 3.757 10 O -0.569 6.569 11 C 0.105 3.895 12 N -0.628 5.628 13 C 0.562 3.438 14 O -0.561 6.561 15 C -0.123 4.123 16 H 0.143 0.857 17 C -0.119 4.119 18 H 0.131 0.869 19 C -0.099 4.099 20 C -0.199 4.199 21 C 0.406 3.594 22 O -0.444 6.444 23 C -0.213 4.213 24 H 0.131 0.869 25 C 0.071 3.929 26 H 0.275 0.725 27 H 0.394 0.606 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 -2.832 -5.450 7.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.201 3.799 10 O -0.382 6.382 11 C -0.017 4.017 12 N -0.360 5.360 13 C 0.351 3.649 14 O -0.442 6.442 15 C -0.144 4.144 16 H 0.160 0.840 17 C -0.138 4.138 18 H 0.149 0.851 19 C -0.136 4.136 20 C -0.236 4.236 21 C 0.281 3.719 22 O -0.317 6.317 23 C -0.232 4.232 24 H 0.149 0.851 25 C -0.052 4.052 26 H 0.085 0.915 27 H 0.251 0.749 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.282 -4.557 -4.832 7.409 hybrid contribution 0.223 1.417 -0.568 1.542 sum -3.059 -3.141 -5.401 6.956 Atomic orbital electron populations 1.69234 1.06142 1.28363 1.50081 1.25045 0.95030 0.99860 0.92932 0.86378 0.79510 0.81578 0.79013 1.19902 1.20985 1.19853 1.21382 0.93904 0.89768 1.52204 0.91052 1.19535 0.85361 0.90845 0.84155 1.86039 1.45068 1.48340 1.58765 1.23392 0.93880 0.92247 0.92217 1.49778 1.41940 1.04607 1.39706 1.18935 0.82124 0.81383 0.82424 1.90724 1.58106 1.40930 1.54462 1.22198 0.89498 1.02235 1.00444 0.83959 1.23309 0.96814 0.93319 1.00340 0.85069 1.22091 1.00822 1.00444 0.90260 1.23440 1.05760 0.94254 1.00148 1.24328 0.69155 0.88437 0.89980 1.90353 1.36843 1.25479 1.78998 1.23703 1.04512 0.95476 0.99531 0.85142 1.24340 1.00756 0.77473 1.02638 0.91490 0.74926 0.91496 0.89616 0.87678 0.90065 0.85598 0.89050 0.90131 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.03 11.01 55.43 0.61 -20.42 16 2 C 0.07 1.72 5.39 -17.82 -0.10 1.62 16 3 Si 0.91 18.40 29.54 -169.99 -5.02 13.38 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.53 -12.41 8.70 -34.44 -0.30 -12.71 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.24 5.25 1.58 -91.12 -0.14 5.11 16 10 O -0.57 -13.03 13.01 -35.23 -0.46 -13.48 16 11 C 0.10 2.10 8.02 -8.49 -0.07 2.03 16 12 N -0.63 -11.90 3.54 -185.00 -0.66 -12.55 16 13 C 0.56 10.55 4.41 -10.99 -0.05 10.50 16 14 O -0.56 -12.46 16.19 5.55 0.09 -12.37 16 15 C -0.12 -1.80 5.93 -91.78 -0.54 -2.34 16 16 H 0.14 1.68 8.14 -51.93 -0.42 1.26 16 17 C -0.12 -1.54 6.80 -89.38 -0.61 -2.14 16 18 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.10 -1.43 6.48 -24.98 -0.16 -1.59 16 20 C -0.20 -3.36 6.12 -25.99 -0.16 -3.52 16 21 C 0.41 7.05 7.11 -27.59 -0.20 6.85 16 22 O -0.44 -8.82 17.99 6.00 0.11 -8.71 16 23 C -0.21 -3.04 6.90 -90.77 -0.63 -3.66 16 24 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 25 C 0.07 1.34 7.55 -8.36 -0.06 1.28 16 26 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 27 H 0.39 9.25 6.32 45.56 0.29 9.54 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 30 H 0.10 1.74 6.13 -51.93 -0.32 1.42 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.13 2.50 4.37 -51.93 -0.23 2.28 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 35 H 0.07 1.28 6.71 -51.93 -0.35 0.94 16 LS Contribution 292.31 15.07 4.41 4.41 Total: -1.00 -27.22 292.31 -7.46 -34.69 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -3.53 Total: 13.64 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.02 Total: 1.42 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: -0.04 Total: -32.97 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.26 Total: -34.56 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.22 -7.46 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119629742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.093 kcal (2) G-P(sol) polarization free energy of solvation -27.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds