Wall clock time and date at job start Mon Mar 30 2020 00:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 115.56189 * 2 1 4 4 C 1.50704 * 109.47110 * 279.66495 * 3 2 1 5 5 O 1.21277 * 119.99984 * 5.01992 * 4 3 2 6 6 N 1.34776 * 119.99969 * 185.01941 * 4 3 2 7 7 C 1.46502 * 120.00147 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46833 * 34.99769 * 7 6 4 9 9 C 1.50697 * 109.47361 * 155.00251 * 7 6 4 10 10 H 1.07995 * 120.00177 * 115.32088 * 9 7 6 11 11 C 1.37881 * 119.99550 * 295.32097 * 9 7 6 12 12 N 1.31518 * 119.99527 * 176.02923 * 11 9 7 13 13 Si 1.86793 * 120.00095 * 356.02730 * 11 9 7 14 14 H 1.48503 * 109.47328 * 89.03319 * 13 11 9 15 15 H 1.48506 * 109.46970 * 209.02733 * 13 11 9 16 16 H 1.48499 * 109.47506 * 329.02601 * 13 11 9 17 17 C 1.53005 * 109.46998 * 275.00270 * 7 6 4 18 18 F 1.39904 * 109.46952 * 57.85938 * 17 7 6 19 19 F 1.39906 * 109.46928 * 177.85504 * 17 7 6 20 20 F 1.39899 * 109.47216 * 297.85398 * 17 7 6 21 21 C 1.53005 * 117.49797 * 145.68841 * 2 1 3 22 22 C 1.53007 * 117.49877 * 214.31127 * 2 1 3 23 23 H 1.09003 * 109.46802 * 210.25399 * 1 2 3 24 24 H 1.08996 * 109.47123 * 330.25307 * 1 2 3 25 25 H 1.08994 * 109.47269 * 90.25972 * 1 2 3 26 26 H 1.08997 * 109.47230 * 39.66062 * 3 2 1 27 27 H 1.08993 * 109.47364 * 159.66211 * 3 2 1 28 28 H 0.96999 * 120.00260 * 0.02562 * 6 4 3 29 29 H 0.97001 * 120.00014 * 179.97438 * 12 11 9 30 30 H 1.09003 * 117.49420 * 214.97897 * 21 2 1 31 31 H 1.08997 * 117.49759 * 0.02562 * 21 2 1 32 32 H 1.08996 * 117.49403 * 359.97438 * 22 2 1 33 33 H 1.08997 * 117.49594 * 145.02011 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.1917 1.9363 -1.4007 5 8 1.6321 1.3345 -2.2927 6 7 2.8149 3.1024 -1.6621 7 6 2.8169 3.6427 -3.0238 8 1 1.8700 3.4073 -3.5095 9 6 2.9962 5.1380 -2.9707 10 1 3.8829 5.5908 -3.3891 11 6 2.0281 5.9281 -2.3878 12 7 2.2195 7.2240 -2.2712 13 14 0.4449 5.1578 -1.7639 14 1 0.6241 4.7323 -0.3524 15 1 -0.6550 6.1523 -1.8452 16 1 0.1068 3.9766 -2.5979 17 6 3.9663 3.0191 -3.8182 18 9 3.8264 1.6271 -3.8262 19 9 3.9386 3.4981 -5.1324 20 9 5.1849 3.3620 -3.2225 21 6 2.2364 -1.1210 0.7650 22 6 2.2365 -1.1210 -0.7650 23 1 -0.3633 -0.8877 0.5178 24 1 -0.3633 0.8922 0.5099 25 1 -0.3633 -0.0047 -1.0276 26 1 1.6332 2.0493 0.6559 27 1 3.2161 1.2922 0.3571 28 1 3.2628 3.5835 -0.9488 29 1 1.5383 7.7800 -1.8615 30 1 3.1715 -0.8751 1.2683 31 1 1.6112 -1.8587 1.2679 32 1 1.6112 -1.8587 -1.2679 33 1 3.1715 -0.8752 -1.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119715343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:07 Heat of formation + Delta-G solvation = -179.793463 kcal Electronic energy + Delta-G solvation = -21459.946363 eV Core-core repulsion = 17685.067897 eV Total energy + Delta-G solvation = -3774.878466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.09644 -46.61056 -46.58322 -39.49198 -37.38991 -34.76164 -32.49286 -30.27153 -28.69362 -27.43724 -25.01247 -22.32895 -21.63945 -20.20524 -18.90476 -18.07774 -17.56058 -16.87724 -16.55580 -16.18240 -15.59260 -14.97260 -14.61039 -14.00287 -13.72753 -13.48241 -13.45960 -13.06086 -13.01797 -12.83176 -12.78956 -12.69372 -12.50472 -12.29746 -11.97844 -11.57584 -11.38726 -11.21600 -11.01365 -10.64816 -10.17925 -10.14504 -9.88126 -9.69777 -9.21575 -8.94307 -8.42700 -6.51368 -4.64669 3.04827 3.11525 3.25177 3.28817 3.56154 3.87090 4.07972 4.10091 4.73835 4.87683 4.92235 4.98746 5.05109 5.13303 5.19341 5.28808 5.58007 5.62555 5.70180 5.75929 5.94235 6.01763 6.09528 6.15803 6.27161 6.42308 6.45925 6.90285 7.12188 7.86130 8.29798 8.51429 8.86047 9.02870 10.57235 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.009088 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.795509 B = 3080.361343 C = 4101.512834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.110 4.110 4 C 0.499 3.501 5 O -0.531 6.531 6 N -0.721 5.721 7 C 0.204 3.796 8 H 0.091 0.909 9 C -0.538 4.538 10 H 0.094 0.906 11 C 0.096 3.904 12 N -0.865 5.865 13 Si 0.876 3.124 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.256 1.256 17 C 0.442 3.558 18 F -0.194 7.194 19 F -0.186 7.186 20 F -0.189 7.189 21 C -0.181 4.181 22 C -0.154 4.154 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.401 0.599 29 H 0.274 0.726 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -10.993 6.012 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.150 4.150 4 C 0.285 3.715 5 O -0.408 6.408 6 N -0.374 5.374 7 C 0.100 3.900 8 H 0.109 0.891 9 C -0.576 4.576 10 H 0.112 0.888 11 C -0.113 4.113 12 N -0.498 5.498 13 Si 0.703 3.297 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.180 1.180 17 C 0.387 3.613 18 F -0.175 7.175 19 F -0.168 7.168 20 F -0.171 7.171 21 C -0.218 4.218 22 C -0.191 4.191 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.237 0.763 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.870 -11.245 5.400 12.505 hybrid contribution -0.303 -0.029 0.604 0.676 sum -1.174 -11.274 6.004 12.827 Atomic orbital electron populations 1.21310 0.91941 1.01115 1.02479 1.21016 0.94867 0.89578 1.05328 1.21336 1.02281 0.95738 0.95641 1.20797 0.78855 0.81192 0.90649 1.90653 1.43933 1.58831 1.47344 1.47489 1.55324 1.22445 1.12161 1.20217 0.92927 0.95591 0.81257 0.89143 1.20808 1.09129 0.85885 1.41800 0.88788 1.24905 0.98032 0.94608 0.93742 1.69873 1.34840 1.04554 1.40534 0.86801 0.82778 0.79892 0.80259 1.19655 1.21194 1.18014 1.21498 0.85370 0.75619 0.78828 1.93138 1.95899 1.31998 1.96506 1.93103 1.96719 1.88205 1.38750 1.93086 1.48218 1.92061 1.83717 1.23220 1.02195 1.01192 0.95204 1.22854 1.02439 1.00784 0.93043 0.92856 0.92611 0.91463 0.88758 0.89156 0.76333 0.91582 0.89067 0.89018 0.88999 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.72 37.16 0.36 -1.12 16 2 C -0.11 -1.49 1.59 -154.51 -0.25 -1.73 16 3 C -0.11 -1.61 5.62 -27.88 -0.16 -1.77 16 4 C 0.50 9.53 6.91 -10.98 -0.08 9.45 16 5 O -0.53 -11.60 13.96 5.56 0.08 -11.53 16 6 N -0.72 -14.48 3.32 -54.93 -0.18 -14.67 16 7 C 0.20 4.67 1.41 -69.08 -0.10 4.57 16 8 H 0.09 2.22 6.18 -51.93 -0.32 1.90 16 9 C -0.54 -13.80 8.66 -34.44 -0.30 -14.10 16 10 H 0.09 2.63 7.89 -52.49 -0.41 2.22 16 11 C 0.10 2.50 5.47 -17.82 -0.10 2.40 16 12 N -0.86 -23.77 13.96 55.43 0.77 -23.00 16 13 Si 0.88 20.08 26.22 -169.99 -4.46 15.63 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.26 -6.07 6.40 56.52 0.36 -5.71 16 17 C 0.44 9.79 2.78 37.16 0.10 9.89 16 18 F -0.19 -4.22 15.62 2.25 0.04 -4.19 16 19 F -0.19 -4.18 17.08 2.25 0.04 -4.14 16 20 F -0.19 -4.10 16.85 2.25 0.04 -4.06 16 21 C -0.18 -2.05 9.82 -26.72 -0.26 -2.31 16 22 C -0.15 -2.11 9.18 -26.72 -0.25 -2.35 16 23 H 0.05 0.59 7.88 -51.93 -0.41 0.18 16 24 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 25 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 26 H 0.09 1.27 7.98 -51.93 -0.41 0.86 16 27 H 0.09 1.13 7.94 -51.93 -0.41 0.72 16 28 H 0.40 7.37 8.59 -40.82 -0.35 7.01 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -28.43 292.01 -4.30 -32.73 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.01 Total: 5.89 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.01 Total: 2.93 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.59 Total: -37.66 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 0.11 Total: -12.38 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.46 Total: 15.63 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.43 -4.30 -32.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119715343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.061 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds