Wall clock time and date at job start Mon Mar 30 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47200 * 2 1 4 4 O 1.34234 * 126.52996 * 269.98051 * 3 2 1 5 5 C 1.34053 * 108.24147 * 180.02562 * 4 3 2 6 6 N 1.29924 * 109.26441 * 359.97438 * 5 4 3 7 7 C 1.36108 * 108.46911 * 0.02562 * 6 5 4 8 8 C 1.47267 * 126.45621 * 180.02562 * 7 6 5 9 9 O 1.21534 * 120.00330 * 179.97438 * 8 7 6 10 10 O 1.34776 * 120.00379 * 359.97438 * 8 7 6 11 11 C 1.45200 * 117.00506 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46782 * 29.99276 * 11 10 8 13 13 C 1.50694 * 109.47147 * 149.99614 * 11 10 8 14 14 H 1.08001 * 120.00511 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99566 * 179.97438 * 13 11 10 16 16 N 1.31507 * 120.00084 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99626 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47080 * 90.00508 * 17 15 13 19 19 H 1.48505 * 109.47010 * 209.99905 * 17 15 13 20 20 H 1.48497 * 109.47521 * 330.00326 * 17 15 13 21 21 C 1.53006 * 109.46442 * 269.99680 * 11 10 8 22 22 C 1.53003 * 117.49582 * 128.74665 * 21 11 10 23 23 C 1.52998 * 117.49984 * 60.08855 * 21 11 10 24 24 H 1.09009 * 109.46564 * 299.99850 * 1 2 3 25 25 H 1.08997 * 109.47612 * 59.99529 * 1 2 3 26 26 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46564 * 240.00150 * 2 1 3 28 28 H 1.08997 * 109.47612 * 120.00471 * 2 1 3 29 29 H 1.07997 * 125.36836 * 179.97438 * 5 4 3 30 30 H 0.97005 * 120.00158 * 179.97438 * 16 15 13 31 31 H 1.08999 * 115.54969 * 274.41006 * 21 11 10 32 32 H 1.09000 * 117.49811 * 359.97438 * 22 21 11 33 33 H 1.08995 * 117.49706 * 145.01444 * 22 21 11 34 34 H 1.09004 * 117.49570 * 214.97563 * 23 21 11 35 35 H 1.08998 * 117.50200 * 359.97315 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1740 -1.0786 5 6 2.7238 3.3739 -0.6580 6 7 2.7305 3.3949 0.6411 7 6 2.3024 2.1850 1.0942 8 6 2.1576 1.7792 2.5024 9 8 1.7623 0.6629 2.7757 10 8 2.4635 2.6457 3.4884 11 6 2.2973 2.1775 4.8527 12 1 2.4614 1.1006 4.8897 13 6 3.2948 2.8687 5.7461 14 1 3.9845 3.5883 5.3302 15 6 3.3262 2.5832 7.0947 16 7 2.4861 1.7074 7.6011 17 14 4.5632 3.4395 8.2019 18 1 3.9678 4.6915 8.7340 19 1 4.9211 2.5431 9.3305 20 1 5.7842 3.7647 7.4217 21 6 0.8788 2.4941 5.3311 22 6 0.0677 1.3498 5.9425 23 6 -0.2840 1.8790 4.5498 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.0145 4.1938 -1.2980 30 1 2.5085 1.5062 8.5498 31 1 0.7344 3.4914 5.7466 32 1 0.5444 0.3715 6.0034 33 1 -0.6106 1.5944 6.7598 34 1 -1.1936 2.4716 4.4516 35 1 -0.0386 1.2492 3.6948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123463702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:44 Heat of formation + Delta-G solvation = -42.439659 kcal Electronic energy + Delta-G solvation = -20377.781793 eV Core-core repulsion = 17150.716175 eV Total energy + Delta-G solvation = -3227.065617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.39165 -39.46235 -36.46887 -35.01013 -34.68927 -34.02736 -32.61139 -29.39377 -27.85978 -24.91525 -23.65451 -23.02890 -21.66391 -21.21391 -20.29098 -19.25856 -17.91795 -16.85541 -16.52087 -16.39266 -15.47644 -15.12517 -15.00274 -14.54930 -14.30737 -13.86262 -13.45785 -12.88783 -12.65094 -12.58673 -11.79891 -11.58008 -11.45720 -11.25682 -11.15720 -11.00528 -10.92261 -10.56663 -10.40876 -10.24548 -9.85097 -9.79130 -9.36397 -9.00787 -8.90539 -8.62776 -8.39601 -6.12188 -4.19278 1.13277 2.17267 2.54672 3.28423 3.33274 3.35939 3.49432 3.56625 4.18989 4.38668 4.57938 4.95787 5.04826 5.13337 5.19108 5.25536 5.51028 5.58120 5.76456 5.78423 5.96792 6.06360 6.14502 6.14855 6.21506 6.41505 6.57659 6.68580 7.01406 7.17499 7.26443 7.39241 7.55215 7.64475 7.86605 8.12651 8.62119 8.92238 9.44882 10.94704 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.005847 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.820067 B = 4787.813481 C = 5488.567084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.041 3.959 4 O -0.201 6.201 5 C 0.162 3.838 6 N -0.439 5.439 7 C -0.045 4.045 8 C 0.543 3.457 9 O -0.510 6.510 10 O -0.328 6.328 11 C 0.248 3.752 12 H 0.050 0.950 13 C -0.526 4.526 14 H 0.070 0.930 15 C 0.069 3.931 16 N -0.874 5.874 17 Si 0.907 3.093 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.229 4.229 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.255 0.745 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 -1.329 -15.063 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.015 4.015 4 O -0.088 6.088 5 C -0.066 4.066 6 N -0.167 5.167 7 C -0.163 4.163 8 C 0.386 3.614 9 O -0.401 6.401 10 O -0.243 6.243 11 C 0.196 3.804 12 H 0.068 0.932 13 C -0.564 4.564 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.510 5.510 17 Si 0.734 3.266 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.266 4.266 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.137 0.863 29 H 0.271 0.729 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.012 -1.216 -14.359 14.722 hybrid contribution 0.408 0.174 0.333 0.554 sum -2.605 -1.043 -14.027 14.304 Atomic orbital electron populations 1.21716 0.93038 1.02905 1.02556 1.20404 0.97160 0.85293 1.05494 1.23771 0.98886 0.95529 0.83294 1.84350 1.63992 1.24365 1.36114 1.28109 1.00060 0.87041 0.91431 1.70917 1.15376 1.21008 1.09399 1.20751 1.10344 0.91549 0.93686 1.19324 0.74303 0.83124 0.84615 1.90754 1.44117 1.21313 1.83941 1.86669 1.75902 1.43287 1.18408 1.20302 0.91830 0.96733 0.71581 0.93244 1.20919 1.17604 1.25833 0.92013 0.91205 1.24867 0.96041 0.95123 0.97464 1.70045 1.35653 1.32015 1.13300 0.86350 0.81239 0.79209 0.79782 1.20443 1.21057 1.19661 1.22600 0.91650 0.97550 1.01574 1.22366 1.01573 0.99147 0.92845 1.23271 1.00063 1.06166 0.97118 0.91551 0.92694 0.91017 0.89748 0.86328 0.72939 0.92659 0.89300 0.89273 0.90776 0.91082 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.05 -0.56 5.93 -27.88 -0.17 -0.72 16 3 C 0.04 0.60 6.69 -35.05 -0.23 0.37 16 4 O -0.20 -2.53 10.72 6.56 0.07 -2.46 16 5 C 0.16 1.94 13.19 51.96 0.69 2.62 16 6 N -0.44 -7.61 11.36 -11.50 -0.13 -7.74 16 7 C -0.05 -0.84 7.04 -83.04 -0.58 -1.42 16 8 C 0.54 12.00 7.17 34.40 0.25 12.25 16 9 O -0.51 -11.32 11.90 -19.29 -0.23 -11.55 16 10 O -0.33 -8.33 9.85 -40.70 -0.40 -8.73 16 11 C 0.25 6.67 2.25 -27.88 -0.06 6.61 16 12 H 0.05 1.44 6.92 -51.93 -0.36 1.08 16 13 C -0.53 -14.96 8.88 -34.44 -0.31 -15.27 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 16 N -0.87 -24.36 11.43 55.43 0.63 -23.73 16 17 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.11 -2.87 4.47 -90.62 -0.41 -3.28 16 22 C -0.12 -2.82 9.04 -26.69 -0.24 -3.06 16 23 C -0.23 -5.00 9.80 -26.70 -0.26 -5.26 16 24 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.12 1.63 6.48 -51.93 -0.34 1.29 16 29 H 0.25 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.09 2.31 8.11 -51.93 -0.42 1.88 16 32 H 0.09 2.18 8.05 -51.93 -0.42 1.76 16 33 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.09 2.05 5.36 -51.93 -0.28 1.78 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -31.84 303.76 -5.87 -37.72 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.32 Total: 2.25 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.06 Total: -6.59 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.50 Total: -31.47 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.56 Total: -22.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.84 -5.87 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.722 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds