Wall clock time and date at job start Mon Mar 30 2020 00:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47200 * 2 1 4 4 O 1.34234 * 126.52996 * 269.98051 * 3 2 1 5 5 C 1.34053 * 108.24147 * 180.02562 * 4 3 2 6 6 N 1.29924 * 109.26441 * 359.97438 * 5 4 3 7 7 C 1.36108 * 108.46911 * 0.02562 * 6 5 4 8 8 C 1.47267 * 126.45621 * 180.02562 * 7 6 5 9 9 O 1.21534 * 120.00330 * 179.97438 * 8 7 6 10 10 O 1.34776 * 120.00379 * 359.97438 * 8 7 6 11 11 C 1.45200 * 117.00506 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46782 * 29.99276 * 11 10 8 13 13 C 1.50694 * 109.47147 * 149.99614 * 11 10 8 14 14 H 1.08001 * 120.00511 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99566 * 179.97438 * 13 11 10 16 16 N 1.31507 * 120.00084 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99626 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47080 * 90.00508 * 17 15 13 19 19 H 1.48505 * 109.47010 * 209.99905 * 17 15 13 20 20 H 1.48497 * 109.47521 * 330.00326 * 17 15 13 21 21 C 1.53006 * 109.46442 * 269.99680 * 11 10 8 22 22 C 1.53003 * 117.49582 * 128.74665 * 21 11 10 23 23 C 1.52998 * 117.49984 * 60.08855 * 21 11 10 24 24 H 1.09009 * 109.46564 * 299.99850 * 1 2 3 25 25 H 1.08997 * 109.47612 * 59.99529 * 1 2 3 26 26 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46564 * 240.00150 * 2 1 3 28 28 H 1.08997 * 109.47612 * 120.00471 * 2 1 3 29 29 H 1.07997 * 125.36836 * 179.97438 * 5 4 3 30 30 H 0.97005 * 120.00158 * 179.97438 * 16 15 13 31 31 H 1.08999 * 115.54969 * 274.41006 * 21 11 10 32 32 H 1.09000 * 117.49811 * 359.97438 * 22 21 11 33 33 H 1.08995 * 117.49706 * 145.01444 * 22 21 11 34 34 H 1.09004 * 117.49570 * 214.97563 * 23 21 11 35 35 H 1.08998 * 117.50200 * 359.97315 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1740 -1.0786 5 6 2.7238 3.3739 -0.6580 6 7 2.7305 3.3949 0.6411 7 6 2.3024 2.1850 1.0942 8 6 2.1576 1.7792 2.5024 9 8 1.7623 0.6629 2.7757 10 8 2.4635 2.6457 3.4884 11 6 2.2973 2.1775 4.8527 12 1 2.4614 1.1006 4.8897 13 6 3.2948 2.8687 5.7461 14 1 3.9845 3.5883 5.3302 15 6 3.3262 2.5832 7.0947 16 7 2.4861 1.7074 7.6011 17 14 4.5632 3.4395 8.2019 18 1 3.9678 4.6915 8.7340 19 1 4.9211 2.5431 9.3305 20 1 5.7842 3.7647 7.4217 21 6 0.8788 2.4941 5.3311 22 6 0.0677 1.3498 5.9425 23 6 -0.2840 1.8790 4.5498 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.0145 4.1938 -1.2980 30 1 2.5085 1.5062 8.5498 31 1 0.7344 3.4914 5.7466 32 1 0.5444 0.3715 6.0034 33 1 -0.6106 1.5944 6.7598 34 1 -1.1936 2.4716 4.4516 35 1 -0.0386 1.2492 3.6948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123463702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:43 Heat of formation + Delta-G solvation = -63.968047 kcal Electronic energy + Delta-G solvation = -20378.715334 eV Core-core repulsion = 17150.716175 eV Total energy + Delta-G solvation = -3227.999158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.51984 -41.24711 -38.30637 -36.79049 -35.91718 -35.11032 -34.72269 -30.65210 -29.78967 -26.38321 -25.04537 -24.57934 -23.11725 -22.91622 -21.67630 -21.15958 -19.48363 -18.51212 -18.08238 -17.88611 -17.00452 -16.86929 -16.43558 -16.05777 -15.67877 -15.41070 -14.71888 -14.51653 -14.47814 -13.60426 -13.54504 -13.32177 -12.99580 -12.82279 -12.69226 -12.52980 -12.28456 -12.23139 -12.14238 -11.82754 -11.77734 -11.49511 -11.28356 -10.96549 -10.62456 -10.45728 -10.08422 -8.23430 -6.40078 -0.11773 0.97108 1.39672 1.42401 1.44302 1.53823 1.92625 2.03756 2.40810 3.03559 3.11027 3.28583 3.45916 3.87236 4.05936 4.09295 4.20577 4.24842 4.28549 4.42338 4.50937 4.63321 4.74994 4.78413 4.93311 5.09295 5.10332 5.14471 5.23266 5.25850 5.38642 5.46822 5.52006 5.78965 6.07471 6.41463 6.62382 6.94612 7.29000 8.83086 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.005847 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.820067 B = 4787.813481 C = 5488.567084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.068 3.932 4 O -0.188 6.188 5 C 0.200 3.800 6 N -0.496 5.496 7 C -0.093 4.093 8 C 0.535 3.465 9 O -0.522 6.522 10 O -0.350 6.350 11 C 0.255 3.745 12 H 0.014 0.986 13 C -0.560 4.560 14 H 0.056 0.944 15 C 0.029 3.971 16 N -0.892 5.892 17 Si 0.974 3.026 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.137 4.137 22 C -0.115 4.115 23 C -0.200 4.200 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.314 0.686 30 H 0.269 0.731 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -0.933 -16.922 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C 0.010 3.990 4 O -0.074 6.074 5 C -0.029 4.029 6 N -0.224 5.224 7 C -0.209 4.209 8 C 0.381 3.619 9 O -0.414 6.414 10 O -0.266 6.266 11 C 0.202 3.798 12 H 0.032 0.968 13 C -0.597 4.597 14 H 0.075 0.925 15 C -0.174 4.174 16 N -0.527 5.527 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.237 4.237 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.141 0.859 28 H 0.115 0.885 29 H 0.328 0.672 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.334 -0.831 -16.221 16.581 hybrid contribution 0.514 0.033 0.751 0.911 sum -2.820 -0.798 -15.470 15.745 Atomic orbital electron populations 1.21702 0.91996 1.04153 1.01904 1.20558 0.97905 0.83842 1.06279 1.24092 0.96256 0.95995 0.82613 1.84421 1.63685 1.24503 1.34824 1.29353 0.95878 0.87225 0.90398 1.70832 1.18148 1.21228 1.12194 1.20450 1.14504 0.93623 0.92307 1.19915 0.73661 0.82722 0.85612 1.90720 1.44674 1.21521 1.84473 1.86642 1.77030 1.44508 1.18414 1.19944 0.92818 0.94333 0.72672 0.96814 1.21141 1.18678 1.26601 0.93294 0.92537 1.25678 0.97765 0.95555 0.98374 1.70138 1.36452 1.32347 1.13796 0.85322 0.78680 0.78429 0.77774 1.19472 1.19883 1.19625 1.22393 0.91813 0.97434 1.03927 1.22296 1.01187 0.97472 0.94306 1.23261 0.99476 1.04860 0.96066 0.94549 0.90882 0.88898 0.85928 0.88505 0.67194 0.92212 0.90617 0.91170 0.89122 0.88141 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.89 71.98 0.71 -2.14 16 2 C -0.05 -1.10 5.93 29.85 0.18 -0.92 16 3 C 0.07 1.90 6.69 25.20 0.17 2.07 16 4 O -0.19 -4.10 10.72 0.57 0.01 -4.10 16 5 C 0.20 4.14 13.19 130.52 1.72 5.87 16 6 N -0.50 -16.91 11.36 -305.22 -3.47 -20.38 16 7 C -0.09 -3.48 7.04 40.37 0.28 -3.20 16 8 C 0.54 24.85 7.17 70.20 0.50 25.36 16 9 O -0.52 -24.43 11.90 19.72 0.23 -24.20 16 10 O -0.35 -18.83 9.85 -56.87 -0.56 -19.39 16 11 C 0.26 14.51 2.25 29.85 0.07 14.58 16 12 H 0.01 0.88 6.92 -2.39 -0.02 0.86 16 13 C -0.56 -33.31 8.88 25.60 0.23 -33.08 16 14 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 15 C 0.03 1.61 5.30 84.66 0.45 2.06 16 16 N -0.89 -50.69 11.43 21.45 0.25 -50.45 16 17 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 21 C -0.14 -7.08 4.47 -10.79 -0.05 -7.13 16 22 C -0.12 -5.43 9.04 30.62 0.28 -5.15 16 23 C -0.20 -8.77 9.80 30.62 0.30 -8.47 16 24 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.10 2.67 6.48 -2.39 -0.02 2.65 16 29 H 0.31 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 31 H 0.08 4.07 8.11 -2.39 -0.02 4.05 16 32 H 0.07 3.55 8.05 -2.39 -0.02 3.53 16 33 H 0.09 3.91 8.14 -2.39 -0.02 3.90 16 34 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.09 3.97 5.36 -2.39 -0.01 3.96 16 Total: -1.00 -73.56 303.76 4.43 -69.13 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.10 Total: 13.36 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 4.84 Total: -10.16 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -3.22 Total: -70.83 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.32 Total: -47.69 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.56 4.43 -69.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.161 kcal (2) G-P(sol) polarization free energy of solvation -73.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds