Wall clock time and date at job start Mon Mar 30 2020 00:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35452 * 126.77510 * 2 1 4 4 C 1.41383 * 103.98224 * 180.09930 * 3 2 1 5 5 C 1.50697 * 126.79899 * 179.88909 * 4 3 2 6 6 C 1.50702 * 109.47087 * 124.71167 * 5 4 3 7 7 O 1.20829 * 119.99856 * 0.02562 * 6 5 4 8 8 O 1.34230 * 120.00293 * 179.97438 * 6 5 4 9 9 C 1.45202 * 117.00174 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.46556 * 329.99960 * 9 8 6 11 11 C 1.50699 * 109.46854 * 210.00166 * 9 8 6 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 9 8 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 9 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 C 1.52993 * 109.47241 * 90.00021 * 9 8 6 20 20 C 1.53002 * 117.49816 * 8.74611 * 19 9 8 21 21 C 1.52997 * 117.50033 * 300.08935 * 19 9 8 22 22 N 1.30174 * 106.39448 * 359.62978 * 4 3 2 23 23 O 1.20915 * 111.60416 * 0.23798 * 22 4 3 24 24 H 1.08997 * 109.47031 * 180.29453 * 1 2 3 25 25 H 1.09000 * 109.46474 * 300.29999 * 1 2 3 26 26 H 1.09000 * 109.47081 * 60.29568 * 1 2 3 27 27 H 1.08000 * 128.01071 * 359.96606 * 3 2 1 28 28 H 1.09004 * 109.47828 * 4.71323 * 5 4 3 29 29 H 1.09004 * 109.47449 * 244.71166 * 5 4 3 30 30 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 31 31 H 1.09005 * 115.55203 * 154.41640 * 19 9 8 32 32 H 1.08995 * 117.49810 * 0.02562 * 20 19 9 33 33 H 1.09005 * 117.49503 * 145.01979 * 20 19 9 34 34 H 1.09006 * 117.50311 * 214.97932 * 21 19 9 35 35 H 1.09007 * 117.50018 * 359.97171 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5372 -0.0024 5 6 4.9211 1.3000 -0.0057 6 6 5.7663 0.8573 1.1608 7 8 5.3556 0.0091 1.9169 8 8 6.9758 1.4046 1.3592 9 6 7.7349 0.9296 2.5022 10 1 7.0487 0.6197 3.2905 11 6 8.6196 2.0374 3.0131 12 1 8.6119 3.0021 2.5277 13 6 9.4382 1.8197 4.1011 14 7 10.2062 2.7882 4.5503 15 14 9.4499 0.1518 4.9421 16 1 10.4771 -0.7142 4.3095 17 1 9.7679 0.3258 6.3822 18 1 8.1143 -0.4822 4.8032 19 6 8.5994 -0.2605 2.0815 20 6 8.6765 -0.5847 0.5882 21 6 7.8825 -1.4942 1.5291 22 7 3.4763 -0.7564 0.0046 23 8 2.3095 -1.0735 0.0060 24 1 -0.3633 -1.0276 0.0053 25 1 -0.3632 0.5185 0.8873 26 1 -0.3633 0.5092 -0.8926 27 1 2.0345 2.1271 -0.0005 28 1 4.7163 2.3673 0.0784 29 1 5.4547 1.1046 -0.9359 30 1 10.7792 2.6362 5.3181 31 1 9.4960 -0.4250 2.6791 32 1 8.1117 0.0501 -0.0945 33 1 9.6238 -0.9628 0.2035 34 1 8.3076 -2.4703 1.7631 35 1 6.7949 -1.4581 1.4660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123465818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:37 Heat of formation + Delta-G solvation = -17.889264 kcal Electronic energy + Delta-G solvation = -20103.685532 eV Core-core repulsion = 16877.684499 eV Total energy + Delta-G solvation = -3226.001032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.93590 -41.68775 -38.64277 -36.73453 -35.70159 -34.94014 -34.27091 -31.37698 -30.19306 -28.58367 -25.12660 -24.19141 -23.49784 -23.17213 -21.54746 -20.62805 -19.15898 -18.75856 -18.46992 -18.01977 -17.91860 -17.33478 -16.45309 -15.72445 -15.53661 -15.05167 -14.84469 -14.48073 -14.18950 -13.93931 -13.83084 -13.62518 -13.45862 -13.34111 -13.13131 -12.74861 -12.47878 -12.18546 -12.08038 -11.94092 -11.59104 -11.50759 -11.16378 -11.00916 -10.81703 -10.70156 -10.20973 -8.47305 -6.54797 0.57135 1.12405 1.18262 1.22401 1.27252 1.38933 1.96511 2.17249 2.31100 2.79330 2.93750 3.05721 3.52917 3.79495 3.84686 3.95759 4.05035 4.12472 4.21220 4.28426 4.40840 4.53483 4.64010 4.66987 4.76629 4.78917 4.92958 4.94303 5.02610 5.06097 5.17635 5.30145 5.32799 5.61357 6.12201 6.48756 6.83962 7.09825 7.36291 8.68177 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.004913 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.473327 B = 5697.352998 C = 5869.856277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.035 4.035 3 C -0.230 4.230 4 C 0.005 3.995 5 C -0.029 4.029 6 C 0.448 3.552 7 O -0.534 6.534 8 O -0.346 6.346 9 C 0.234 3.766 10 H 0.026 0.974 11 C -0.532 4.532 12 H 0.052 0.948 13 C 0.037 3.963 14 N -0.926 5.926 15 Si 0.932 3.068 16 H -0.253 1.253 17 H -0.280 1.280 18 H -0.261 1.261 19 C -0.197 4.197 20 C -0.149 4.149 21 C -0.193 4.193 22 N -0.382 5.382 23 O 0.090 5.910 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.205 0.795 28 H 0.160 0.840 29 H 0.143 0.857 30 H 0.275 0.725 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 -4.770 -11.880 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 C -0.251 4.251 4 C -0.153 4.153 5 C -0.067 4.067 6 C 0.291 3.709 7 O -0.425 6.425 8 O -0.262 6.262 9 C 0.180 3.820 10 H 0.044 0.956 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.164 4.164 14 N -0.565 5.565 15 Si 0.757 3.243 16 H -0.179 1.179 17 H -0.207 1.207 18 H -0.186 1.186 19 C -0.215 4.215 20 C -0.186 4.186 21 C -0.230 4.230 22 N -0.085 5.085 23 O 0.021 5.979 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.133 0.867 27 H 0.222 0.778 28 H 0.178 0.822 29 H 0.161 0.839 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.054 -5.981 -11.494 21.418 hybrid contribution 0.331 0.227 0.964 1.044 sum -16.723 -5.754 -10.530 20.583 Atomic orbital electron populations 1.20578 0.80554 1.05802 1.05830 1.25388 0.98192 0.85186 1.01066 1.22751 0.89373 1.02814 1.10146 1.23152 0.97329 0.90144 1.04681 1.19770 0.88264 1.02689 0.95934 1.24156 0.81135 0.78952 0.86612 1.90611 1.72663 1.31788 1.47394 1.86486 1.28665 1.62228 1.48809 1.19991 0.88212 0.91655 0.82157 0.95607 1.20877 1.23593 0.97958 1.14499 0.92942 1.25438 0.93917 1.00498 0.96505 1.69945 1.26264 1.34283 1.25963 0.86097 0.80050 0.80352 0.77807 1.17860 1.20656 1.18552 1.23181 1.01938 0.96821 0.99608 1.22898 1.02422 1.01784 0.91468 1.23257 0.99550 0.95017 1.05135 1.73890 0.97729 1.17554 1.19327 1.84795 1.11191 1.34598 1.67289 0.89144 0.87729 0.86732 0.77791 0.82241 0.83889 0.91526 0.88340 0.88558 0.86877 0.87604 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.45 71.24 0.74 0.18 16 2 C -0.03 -0.67 7.49 25.04 0.19 -0.48 16 3 C -0.23 -4.61 11.05 22.40 0.25 -4.36 16 4 C 0.01 0.14 6.10 43.58 0.27 0.41 16 5 C -0.03 -0.78 6.41 29.10 0.19 -0.59 16 6 C 0.45 17.67 6.90 71.24 0.49 18.16 16 7 O -0.53 -24.57 12.64 21.96 0.28 -24.29 16 8 O -0.35 -15.68 8.38 -51.42 -0.43 -16.11 16 9 C 0.23 12.11 2.00 29.85 0.06 12.17 16 10 H 0.03 1.46 6.21 -2.38 -0.01 1.45 16 11 C -0.53 -31.47 9.48 25.60 0.24 -31.22 16 12 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 13 C 0.04 2.15 5.44 84.66 0.46 2.61 16 14 N -0.93 -56.88 13.96 21.45 0.30 -56.59 16 15 Si 0.93 45.52 24.48 68.60 1.68 47.20 16 16 H -0.25 -11.50 6.72 99.48 0.67 -10.83 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.26 -12.86 6.53 99.48 0.65 -12.21 16 19 C -0.20 -9.10 4.45 -10.80 -0.05 -9.15 16 20 C -0.15 -5.65 9.80 30.62 0.30 -5.35 16 21 C -0.19 -7.72 9.85 30.62 0.30 -7.42 16 22 N -0.38 -12.57 11.47 -49.57 -0.57 -13.14 16 23 O 0.09 2.48 11.20 71.71 0.80 3.28 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 28 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.14 3.12 8.14 -2.38 -0.02 3.10 16 30 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.10 4.70 4.40 -2.38 -0.01 4.69 16 32 H 0.10 3.55 6.91 -2.39 -0.02 3.53 16 33 H 0.11 3.66 8.14 -2.38 -0.02 3.64 16 34 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 35 H 0.09 3.86 5.37 -2.38 -0.01 3.85 16 Total: -1.00 -77.51 296.21 6.52 -70.99 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.02 Total: 13.71 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 3.44 Total: -25.06 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -0.27 Total: -69.72 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: 0.65 Total: -37.13 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.68 Total: 47.20 kcal Total: -77.51 6.52 -70.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123465818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.102 kcal (2) G-P(sol) polarization free energy of solvation -77.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds