Wall clock time and date at job start Sun Mar 29 2020 23:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47107 * 300.00173 * 3 2 1 6 6 H 1.48496 * 109.46973 * 60.00016 * 3 2 1 7 7 C 1.37873 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99735 * 185.08660 * 7 2 1 9 9 C 1.50699 * 120.00411 * 5.09607 * 7 2 1 10 10 H 1.08998 * 109.47365 * 185.77190 * 9 7 2 11 11 C 1.50703 * 109.46615 * 305.76806 * 9 7 2 12 12 O 1.21286 * 119.99691 * 120.00415 * 11 9 7 13 13 N 1.34775 * 120.00578 * 299.99953 * 11 9 7 14 14 O 1.41589 * 120.00312 * 179.97438 * 13 11 9 15 15 C 1.42900 * 114.00157 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47149 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47341 * 64.99667 * 16 15 14 18 18 C 1.50695 * 109.47444 * 65.76830 * 9 7 2 19 19 C 1.38241 * 120.00079 * 355.08466 * 18 9 7 20 20 C 1.38227 * 119.99953 * 179.97438 * 19 18 9 21 21 C 1.38230 * 120.00376 * 359.95392 * 20 19 18 22 22 C 1.38235 * 120.00014 * 359.97438 * 21 20 19 23 23 C 1.38236 * 119.99966 * 175.05931 * 18 9 7 24 24 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99437 * 0.02562 * 13 11 9 26 26 H 1.09006 * 109.47006 * 299.99774 * 15 14 13 27 27 H 1.09002 * 109.47468 * 59.99856 * 15 14 13 28 28 H 1.09005 * 109.46846 * 184.99908 * 16 15 14 29 29 H 1.08999 * 109.47170 * 304.99665 * 16 15 14 30 30 H 0.96700 * 114.00055 * 179.97438 * 17 16 15 31 31 H 1.08003 * 119.99372 * 359.97249 * 19 18 9 32 32 H 1.08003 * 119.99739 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.00252 * 179.72026 * 21 20 19 34 34 H 1.07996 * 120.00058 * 179.97438 * 22 21 20 35 35 H 1.07996 * 120.00272 * 0.02562 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0824 9 6 1.2556 -2.4965 -0.1170 10 1 1.9507 -3.3274 0.0030 11 6 0.1994 -2.5662 0.9557 12 8 -0.9693 -2.6736 0.6500 13 7 0.5536 -2.5094 2.2549 14 8 -0.4388 -2.5743 3.2627 15 6 0.0782 -2.5022 4.5930 16 6 -1.0764 -2.5820 5.5939 17 8 -1.7006 -3.8639 5.4998 18 6 0.6015 -2.5805 -1.4721 19 6 0.6632 -1.5041 -2.3373 20 6 0.0637 -1.5813 -3.5804 21 6 -0.5966 -2.7352 -3.9588 22 6 -0.6570 -3.8122 -3.0943 23 6 -0.0596 -3.7341 -1.8501 24 1 -0.4850 0.8400 0.0004 25 1 1.4883 -2.4232 2.4994 26 1 0.7632 -3.3331 4.7621 27 1 0.6100 -1.5601 4.7256 28 1 -0.6922 -2.4381 6.6038 29 1 -1.8067 -1.8048 5.3687 30 1 -2.4428 -3.9855 6.1077 31 1 1.1797 -0.6028 -2.0418 32 1 0.1115 -0.7402 -4.2561 33 1 -1.0689 -2.7939 -4.9284 34 1 -1.1733 -4.7136 -3.3898 35 1 -0.1078 -4.5751 -1.1742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138490333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:07 Heat of formation + Delta-G solvation = -48.879712 kcal Electronic energy + Delta-G solvation = -20244.184830 eV Core-core repulsion = 17016.839950 eV Total energy + Delta-G solvation = -3227.344879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.81373 -37.74361 -36.96716 -35.64786 -33.70079 -31.31036 -30.84591 -29.65142 -28.78689 -26.98825 -23.92844 -22.41273 -21.26809 -20.80583 -19.23070 -17.73172 -17.35716 -16.86456 -15.74449 -15.28277 -14.94950 -14.83120 -14.29630 -14.04085 -13.83784 -13.66089 -13.07988 -12.72898 -12.39266 -12.22390 -12.08522 -11.92185 -11.41959 -11.23054 -11.00046 -10.78365 -10.45628 -10.32905 -10.07886 -10.03847 -9.76297 -9.40745 -8.67513 -8.29859 -7.76592 -7.70881 -7.44266 -6.20289 -4.36970 2.43203 2.58241 2.99030 3.15783 3.26155 3.28006 4.17658 4.24295 4.40012 4.95278 5.03042 5.04572 5.15217 5.24858 5.52940 5.74786 5.83733 5.88141 5.93791 6.03294 6.29793 6.46543 6.61357 6.74957 6.84496 7.07235 7.20795 7.49987 7.59803 7.60817 7.66868 7.75179 7.94125 8.12027 8.23546 8.54272 8.75474 9.28941 9.82497 10.80086 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.007274 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.785233 B = 3848.344036 C = 5150.270168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.070 3.930 10 H 0.061 0.939 11 C 0.564 3.436 12 O -0.530 6.530 13 N -0.600 5.600 14 O -0.151 6.151 15 C 0.035 3.965 16 C 0.085 3.915 17 O -0.564 6.564 18 C -0.020 4.020 19 C -0.057 4.057 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.112 4.112 24 H 0.268 0.732 25 H 0.400 0.600 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.377 0.623 31 H 0.137 0.863 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -3.273 5.785 6.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.584 4.584 8 H 0.090 0.910 9 C 0.048 3.952 10 H 0.079 0.921 11 C 0.353 3.647 12 O -0.403 6.403 13 N -0.305 5.305 14 O -0.154 6.154 15 C -0.043 4.043 16 C 0.006 3.994 17 O -0.369 6.369 18 C -0.021 4.021 19 C -0.075 4.075 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.130 4.130 24 H 0.078 0.922 25 H 0.238 0.762 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.155 0.845 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.205 -3.327 5.046 6.163 hybrid contribution 0.345 1.383 0.998 1.740 sum 1.550 -1.944 6.044 6.536 Atomic orbital electron populations 1.70096 1.05380 1.27277 1.44407 1.25115 0.94932 0.99506 0.94304 0.86585 0.80326 0.83598 0.78019 1.19320 1.20505 1.20921 1.20830 0.93544 0.88795 1.55195 0.90988 1.17821 0.91691 0.98731 0.86934 0.92083 1.21351 0.91145 0.72661 0.79497 1.90553 1.20169 1.48849 1.80770 1.47834 1.03045 1.80456 0.99178 1.90598 1.18625 1.96536 1.09631 1.22827 0.96628 1.01002 0.83873 1.22106 0.94797 0.86009 0.96534 1.86610 1.50998 1.33987 1.65340 1.19749 0.95099 0.92206 0.95092 1.21419 0.96128 0.98720 0.91217 1.21064 1.00871 0.97276 0.97503 1.20814 1.01599 0.94493 0.98997 1.20789 1.01946 0.98256 0.95075 1.20924 0.98316 0.98257 0.95510 0.92164 0.76191 0.92260 0.91332 0.91958 0.92511 0.77682 0.84529 0.87878 0.88005 0.87842 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.99 10.42 55.43 0.58 -22.42 16 2 C 0.07 1.74 3.19 -17.82 -0.06 1.68 16 3 Si 0.89 19.40 29.54 -169.99 -5.02 14.38 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.55 -13.23 7.62 -34.44 -0.26 -13.50 16 8 H 0.07 1.67 7.82 -52.48 -0.41 1.26 16 9 C 0.07 1.68 2.67 -94.08 -0.25 1.42 16 10 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 11 C 0.56 14.44 5.51 -10.98 -0.06 14.38 16 12 O -0.53 -15.72 15.56 -12.64 -0.20 -15.92 16 13 N -0.60 -13.40 6.29 31.22 0.20 -13.20 16 14 O -0.15 -3.34 11.07 -34.83 -0.39 -3.72 16 15 C 0.03 0.54 6.61 37.16 0.25 0.79 16 16 C 0.08 1.07 7.43 37.16 0.28 1.35 16 17 O -0.56 -7.88 13.62 -40.08 -0.55 -8.42 16 18 C -0.02 -0.50 4.50 -104.62 -0.47 -0.97 16 19 C -0.06 -1.36 8.00 -39.58 -0.32 -1.68 16 20 C -0.15 -3.17 10.05 -39.59 -0.40 -3.56 16 21 C -0.14 -2.79 10.05 -39.59 -0.40 -3.19 16 22 C -0.14 -2.90 10.05 -39.58 -0.40 -3.29 16 23 C -0.11 -2.52 8.74 -39.58 -0.35 -2.87 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.40 7.60 8.43 -40.82 -0.34 7.26 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.38 3.14 9.12 45.56 0.42 3.56 16 31 H 0.14 3.41 4.97 -52.48 -0.26 3.15 16 32 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 303.81 15.07 4.58 4.58 Total: -1.00 -34.04 303.81 -6.77 -40.81 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -3.54 Total: 13.34 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.44 Total: -9.43 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.77 Total: -35.62 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.13 Total: -28.06 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.04 -6.77 -40.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138490333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.067 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds