Wall clock time and date at job start Mon Mar 30 2020 00:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47045 * 2 1 4 4 C 1.53000 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47466 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99650 * 279.55877 * 5 4 3 7 7 H 1.07993 * 120.00700 * 36.69975 * 6 5 4 8 8 C 1.38998 * 119.99764 * 216.69513 * 6 5 4 9 9 N 1.31404 * 120.00043 * 25.71258 * 8 6 5 10 10 Si 1.86808 * 120.00318 * 205.71522 * 8 6 5 11 11 H 1.48499 * 109.46770 * 59.99791 * 10 8 6 12 12 H 1.48500 * 109.47205 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46700 * 300.00051 * 10 8 6 14 14 C 1.34772 * 120.00099 * 99.55068 * 5 4 3 15 15 O 1.21634 * 119.99943 * 186.86106 * 14 5 4 16 16 C 1.47428 * 119.99940 * 7.13885 * 14 5 4 17 17 C 1.41892 * 120.26395 * 151.05025 * 16 14 5 18 18 C 1.35938 * 118.86345 * 179.97438 * 17 16 14 19 19 C 1.40862 * 119.34959 * 359.97438 * 18 17 16 20 20 O 1.21855 * 119.74860 * 180.02562 * 19 18 17 21 21 O 1.34367 * 120.49910 * 0.02562 * 19 18 17 22 22 C 1.33734 * 121.20885 * 359.73562 * 21 19 18 23 23 H 1.09001 * 109.47263 * 299.99953 * 1 2 3 24 24 H 1.08996 * 109.47089 * 60.00397 * 1 2 3 25 25 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47096 * 239.99290 * 2 1 3 27 27 H 1.09006 * 109.46685 * 119.99926 * 2 1 3 28 28 H 1.08999 * 109.47753 * 59.99692 * 3 2 1 29 29 H 1.09006 * 109.47318 * 299.99538 * 3 2 1 30 30 H 1.09001 * 109.47539 * 59.99573 * 4 3 2 31 31 H 1.09005 * 109.47176 * 299.99730 * 4 3 2 32 32 H 0.97001 * 119.99913 * 184.98356 * 9 8 6 33 33 H 1.08008 * 120.56820 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.32638 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.69649 * 180.28186 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1014 3.5340 -1.1698 7 1 3.3238 3.4063 -1.9082 8 6 5.1462 4.4197 -1.4070 9 7 6.3075 4.2383 -0.8195 10 14 4.8993 5.8679 -2.5608 11 1 3.8071 6.7315 -2.0445 12 1 6.1560 6.6547 -2.6436 13 1 4.5387 5.3684 -3.9120 14 6 4.4651 3.3951 1.1508 15 8 4.7521 4.5769 1.1748 16 6 4.5682 2.5864 2.3792 17 6 5.5115 2.9275 3.3829 18 6 5.5819 2.1625 4.5044 19 6 4.7203 1.0565 4.6409 20 8 4.7769 0.3661 5.6434 21 8 3.8366 0.7570 3.6740 22 6 3.7460 1.4978 2.5643 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 3.9337 0.9284 -0.8890 31 1 3.9329 0.9288 0.8909 32 1 7.0134 4.8948 -0.9274 33 1 6.1618 3.7808 3.2583 34 1 6.2909 2.4009 5.2835 35 1 3.0237 1.2376 1.8047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147584350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:08 Heat of formation + Delta-G solvation = -45.154091 kcal Electronic energy + Delta-G solvation = -20531.743454 eV Core-core repulsion = 17304.560130 eV Total energy + Delta-G solvation = -3227.183324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71071 -38.99349 -37.36354 -35.98236 -34.63488 -33.59529 -32.20259 -30.14528 -28.56465 -25.43205 -24.78159 -23.82292 -23.00170 -20.95137 -20.42323 -18.49096 -17.54254 -16.94253 -16.49833 -16.31295 -15.42516 -15.08535 -14.63063 -14.22532 -14.10470 -13.90887 -13.59173 -13.08132 -12.68542 -12.58141 -12.51336 -11.98129 -11.84983 -11.57804 -11.31022 -11.06825 -10.99218 -10.89865 -10.74361 -10.49615 -10.36108 -10.27371 -9.88908 -8.99045 -8.48212 -8.08880 -7.44369 -6.38485 -4.03045 0.69718 1.66689 2.69812 3.21192 3.30259 3.33930 3.42210 4.02989 4.31867 4.44886 4.65645 4.81604 5.02037 5.05004 5.07819 5.15704 5.26958 5.40202 5.47662 5.61421 5.73078 5.87205 5.90757 5.93544 6.05138 6.10517 6.26522 6.31931 6.35433 6.42659 6.60591 7.34257 7.39620 7.71693 7.96565 8.74275 8.90457 9.36768 9.97728 10.69107 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.007942 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.525864 B = 3524.711476 C = 5073.371347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.147 4.147 4 C 0.063 3.937 5 N -0.433 5.433 6 C -0.346 4.346 7 H 0.088 0.912 8 C 0.075 3.925 9 N -0.818 5.818 10 Si 0.911 3.089 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.512 3.488 15 O -0.535 6.535 16 C -0.221 4.221 17 C 0.047 3.953 18 C -0.287 4.287 19 C 0.491 3.509 20 O -0.494 6.494 21 O -0.260 6.260 22 C 0.075 3.925 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.270 0.730 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -6.136 1.892 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.185 4.185 4 C -0.060 4.060 5 N -0.153 5.153 6 C -0.471 4.471 7 H 0.105 0.895 8 C -0.137 4.137 9 N -0.450 5.450 10 Si 0.737 3.263 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.300 3.700 15 O -0.415 6.415 16 C -0.227 4.227 17 C 0.027 3.973 18 C -0.306 4.306 19 C 0.344 3.656 20 O -0.386 6.386 21 O -0.169 6.169 22 C 0.009 3.991 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.617 -5.980 2.358 8.536 hybrid contribution 0.262 0.857 -0.591 1.073 sum -5.355 -5.123 1.767 7.619 Atomic orbital electron populations 1.21760 0.95866 1.01310 1.01938 1.21567 0.95996 0.96783 1.02281 1.22153 0.96357 0.96563 1.03441 1.22547 0.93469 0.87202 1.02800 1.43247 1.56967 1.08691 1.06355 1.19015 1.07798 1.24195 0.96113 0.89469 1.25140 0.92993 0.98952 0.96644 1.69904 1.01771 1.32557 1.40790 0.86293 0.78016 0.82259 0.79721 1.19756 1.21089 1.20204 1.17082 0.84967 0.86751 0.81165 1.90626 1.51807 1.15198 1.83857 1.20909 1.01656 0.99296 1.00789 1.21743 0.91273 0.95382 0.88881 1.22372 1.06286 0.99572 1.02416 1.19347 0.79229 0.85632 0.81351 1.90947 1.68809 1.53559 1.25326 1.83457 1.54300 1.52721 1.26384 1.26399 0.98914 0.89036 0.84731 0.92765 0.92668 0.92955 0.91504 0.92016 0.91850 0.90063 0.90487 0.90525 0.91976 0.83199 0.82535 0.75316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.39 5.87 -26.73 -0.16 -1.55 16 3 C -0.15 -2.03 4.54 -26.73 -0.12 -2.15 16 4 C 0.06 1.07 4.84 -4.04 -0.02 1.05 16 5 N -0.43 -9.80 2.57 -116.03 -0.30 -10.09 16 6 C -0.35 -8.68 9.20 -14.99 -0.14 -8.82 16 7 H 0.09 2.07 7.95 -52.49 -0.42 1.65 16 8 C 0.08 1.98 4.13 -17.45 -0.07 1.90 16 9 N -0.82 -22.65 11.84 55.50 0.66 -21.99 16 10 Si 0.91 20.63 29.63 -169.99 -5.04 15.60 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.51 12.10 6.65 -12.52 -0.08 12.02 16 15 O -0.54 -14.78 14.47 5.25 0.08 -14.71 16 16 C -0.22 -4.24 5.63 -104.97 -0.59 -4.83 16 17 C 0.05 0.81 9.67 -39.01 -0.38 0.44 16 18 C -0.29 -4.58 9.98 -39.41 -0.39 -4.97 16 19 C 0.49 8.66 7.93 31.72 0.25 8.92 16 20 O -0.49 -9.84 17.93 -19.60 -0.35 -10.19 16 21 O -0.26 -4.31 9.85 -17.62 -0.17 -4.48 16 22 C 0.08 1.21 8.94 30.52 0.27 1.49 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 28 H 0.06 0.87 7.23 -51.93 -0.38 0.49 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 31 H 0.08 1.19 3.84 -54.52 -0.21 0.98 16 32 H 0.27 7.22 8.32 -40.82 -0.34 6.88 16 33 H 0.15 2.61 7.97 -52.48 -0.42 2.19 16 34 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.23 3.24 2.31 -52.48 -0.12 3.12 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -31.37 297.26 -5.75 -37.12 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.04 Total: 1.88 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.06 Total: 2.39 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.36 Total: -32.09 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.45 Total: -29.38 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.37 -5.75 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147584350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.034 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds