Wall clock time and date at job start Mon Mar 30 2020 00:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47045 * 2 1 4 4 C 1.53000 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47466 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99650 * 279.55877 * 5 4 3 7 7 H 1.07993 * 120.00700 * 36.69975 * 6 5 4 8 8 C 1.38998 * 119.99764 * 216.69513 * 6 5 4 9 9 N 1.31404 * 120.00043 * 25.71258 * 8 6 5 10 10 Si 1.86808 * 120.00318 * 205.71522 * 8 6 5 11 11 H 1.48499 * 109.46770 * 59.99791 * 10 8 6 12 12 H 1.48500 * 109.47205 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46700 * 300.00051 * 10 8 6 14 14 C 1.34772 * 120.00099 * 99.55068 * 5 4 3 15 15 O 1.21634 * 119.99943 * 186.86106 * 14 5 4 16 16 C 1.47428 * 119.99940 * 7.13885 * 14 5 4 17 17 C 1.41892 * 120.26395 * 151.05025 * 16 14 5 18 18 C 1.35938 * 118.86345 * 179.97438 * 17 16 14 19 19 C 1.40862 * 119.34959 * 359.97438 * 18 17 16 20 20 O 1.21855 * 119.74860 * 180.02562 * 19 18 17 21 21 O 1.34367 * 120.49910 * 0.02562 * 19 18 17 22 22 C 1.33734 * 121.20885 * 359.73562 * 21 19 18 23 23 H 1.09001 * 109.47263 * 299.99953 * 1 2 3 24 24 H 1.08996 * 109.47089 * 60.00397 * 1 2 3 25 25 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47096 * 239.99290 * 2 1 3 27 27 H 1.09006 * 109.46685 * 119.99926 * 2 1 3 28 28 H 1.08999 * 109.47753 * 59.99692 * 3 2 1 29 29 H 1.09006 * 109.47318 * 299.99538 * 3 2 1 30 30 H 1.09001 * 109.47539 * 59.99573 * 4 3 2 31 31 H 1.09005 * 109.47176 * 299.99730 * 4 3 2 32 32 H 0.97001 * 119.99913 * 184.98356 * 9 8 6 33 33 H 1.08008 * 120.56820 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.32638 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.69649 * 180.28186 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1014 3.5340 -1.1698 7 1 3.3238 3.4063 -1.9082 8 6 5.1462 4.4197 -1.4070 9 7 6.3075 4.2383 -0.8195 10 14 4.8993 5.8679 -2.5608 11 1 3.8071 6.7315 -2.0445 12 1 6.1560 6.6547 -2.6436 13 1 4.5387 5.3684 -3.9120 14 6 4.4651 3.3951 1.1508 15 8 4.7521 4.5769 1.1748 16 6 4.5682 2.5864 2.3792 17 6 5.5115 2.9275 3.3829 18 6 5.5819 2.1625 4.5044 19 6 4.7203 1.0565 4.6409 20 8 4.7769 0.3661 5.6434 21 8 3.8366 0.7570 3.6740 22 6 3.7460 1.4978 2.5643 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 3.9337 0.9284 -0.8890 31 1 3.9329 0.9288 0.8909 32 1 7.0134 4.8948 -0.9274 33 1 6.1618 3.7808 3.2583 34 1 6.2909 2.4009 5.2835 35 1 3.0237 1.2376 1.8047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147584350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:08 Heat of formation + Delta-G solvation = -63.173215 kcal Electronic energy + Delta-G solvation = -20532.524822 eV Core-core repulsion = 17304.560130 eV Total energy + Delta-G solvation = -3227.964692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.15738 -40.64577 -38.87995 -37.41261 -36.11203 -35.12438 -33.84972 -31.70292 -29.81465 -27.19327 -26.17017 -25.29439 -24.30494 -22.12603 -21.93522 -19.98582 -19.13176 -18.39994 -18.06843 -17.86462 -16.93923 -16.56033 -16.22684 -15.82732 -15.55764 -15.24840 -14.99601 -14.37877 -14.14038 -14.05811 -13.74880 -13.57284 -13.22842 -13.05272 -12.82594 -12.81323 -12.26032 -12.19507 -12.11182 -11.94782 -11.80024 -11.41606 -11.32685 -10.83233 -10.34151 -9.52742 -9.30501 -8.32381 -5.99345 -0.66270 0.18349 1.27056 1.39945 1.48730 1.52683 1.95189 2.26403 2.59296 2.89138 3.16986 3.22012 3.45879 3.65663 3.86320 3.93080 4.12450 4.24264 4.30387 4.38144 4.57622 4.62869 4.82691 4.91120 4.96515 4.99180 5.04316 5.18141 5.36577 5.41776 5.47476 5.56792 5.91324 6.07898 6.29103 6.88269 7.07769 7.52692 8.16544 8.74987 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.007942 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.525864 B = 3524.711476 C = 5073.371347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.139 4.139 4 C 0.061 3.939 5 N -0.447 5.447 6 C -0.359 4.359 7 H 0.095 0.905 8 C 0.028 3.972 9 N -0.857 5.857 10 Si 0.964 3.036 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.255 1.255 14 C 0.505 3.495 15 O -0.586 6.586 16 C -0.247 4.247 17 C 0.038 3.962 18 C -0.265 4.265 19 C 0.490 3.510 20 O -0.514 6.514 21 O -0.252 6.252 22 C 0.116 3.884 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.263 0.737 33 H 0.145 0.855 34 H 0.184 0.816 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -7.753 2.288 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.177 4.177 4 C -0.061 4.061 5 N -0.166 5.166 6 C -0.486 4.486 7 H 0.113 0.887 8 C -0.180 4.180 9 N -0.492 5.492 10 Si 0.789 3.211 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.179 1.179 14 C 0.295 3.705 15 O -0.469 6.469 16 C -0.252 4.252 17 C 0.019 3.981 18 C -0.284 4.284 19 C 0.345 3.655 20 O -0.408 6.408 21 O -0.159 6.159 22 C 0.050 3.950 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.201 0.799 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -6.920 -7.645 2.733 10.668 hybrid contribution 0.572 1.255 -0.631 1.517 sum -6.348 -6.390 2.102 9.249 Atomic orbital electron populations 1.21762 0.94888 1.02328 1.01921 1.21556 0.96785 0.94410 1.03383 1.22078 0.93730 0.98868 1.03024 1.22747 0.95454 0.84311 1.03590 1.43449 1.56925 1.10740 1.05515 1.19319 1.07554 1.24916 0.96803 0.88691 1.25920 0.92947 1.01065 0.98076 1.69990 1.02475 1.33196 1.43508 0.85470 0.77111 0.79455 0.79105 1.20795 1.21622 1.17944 1.17673 0.83686 0.86659 0.82473 1.90580 1.53719 1.17545 1.85075 1.20609 1.04048 1.00644 0.99890 1.21684 0.91363 0.95851 0.89211 1.22493 1.05771 0.98026 1.02158 1.19551 0.79228 0.85644 0.81107 1.90953 1.69396 1.54242 1.26179 1.83491 1.53921 1.52349 1.26157 1.26596 0.97204 0.86982 0.84241 0.92603 0.92979 0.91433 0.90872 0.90524 0.91624 0.91260 0.90387 0.88966 0.92733 0.83713 0.79894 0.73182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.78 16 2 C -0.12 -2.27 5.87 30.59 0.18 -2.09 16 3 C -0.14 -3.54 4.54 30.59 0.14 -3.40 16 4 C 0.06 1.97 4.84 86.38 0.42 2.39 16 5 N -0.45 -20.21 2.57 -639.25 -1.65 -21.86 16 6 C -0.36 -18.20 9.20 84.08 0.77 -17.43 16 7 H 0.10 4.50 7.95 -2.91 -0.02 4.48 16 8 C 0.03 1.49 4.13 84.94 0.35 1.85 16 9 N -0.86 -48.97 11.84 21.67 0.26 -48.71 16 10 Si 0.96 43.10 29.63 68.60 2.03 45.13 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 14 C 0.51 24.11 6.65 86.66 0.58 24.68 16 15 O -0.59 -33.35 14.47 -4.14 -0.06 -33.41 16 16 C -0.25 -9.22 5.63 -20.09 -0.11 -9.34 16 17 C 0.04 1.31 9.67 22.64 0.22 1.53 16 18 C -0.27 -7.85 9.98 22.38 0.22 -7.63 16 19 C 0.49 15.96 7.93 68.46 0.54 16.50 16 20 O -0.51 -19.15 17.93 18.72 0.34 -18.81 16 21 O -0.25 -7.54 9.85 25.82 0.25 -7.28 16 22 C 0.12 3.44 8.94 67.69 0.61 4.04 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.21 7.88 -2.38 -0.02 1.19 16 28 H 0.07 1.65 7.23 -2.39 -0.02 1.63 16 29 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 31 H 0.09 2.64 3.84 -4.82 -0.02 2.62 16 32 H 0.26 14.66 8.32 -92.71 -0.77 13.89 16 33 H 0.15 5.10 7.97 -2.91 -0.02 5.07 16 34 H 0.18 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.25 6.32 2.31 -2.91 -0.01 6.32 16 Total: -1.00 -68.78 297.26 6.90 -61.87 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.10 Total: 13.74 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 4.63 Total: 9.33 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.39 Total: -70.57 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: 0.53 Total: -59.50 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -68.78 6.90 -61.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147584350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.302 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds