Wall clock time and date at job start Mon Mar 30 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.53004 * 109.47345 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47249 * 180.02562 * 4 3 2 6 6 C 1.36429 * 119.99755 * 263.09751 * 5 4 3 7 7 H 1.07995 * 120.00052 * 29.33050 * 6 5 4 8 8 C 1.39356 * 119.99666 * 209.32540 * 6 5 4 9 9 N 1.31165 * 120.00307 * 18.15660 * 8 6 5 10 10 Si 1.86803 * 119.99723 * 198.16037 * 8 6 5 11 11 H 1.48503 * 109.47413 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47424 * 120.00108 * 10 8 6 13 13 H 1.48498 * 109.47260 * 239.99904 * 10 8 6 14 14 C 1.34773 * 119.99969 * 83.09557 * 5 4 3 15 15 O 1.21607 * 119.99680 * 183.30903 * 14 5 4 16 16 C 1.47757 * 120.00211 * 3.31427 * 14 5 4 17 17 C 1.35946 * 119.64400 * 172.74057 * 16 14 5 18 18 C 1.42256 * 118.81051 * 179.80377 * 17 16 14 19 19 O 1.22099 * 120.90238 * 180.21762 * 18 17 16 20 20 C 1.41779 * 118.18938 * 0.46206 * 18 17 16 21 21 C 1.34945 * 119.14661 * 359.75647 * 20 18 17 22 22 O 1.33786 * 121.13029 * 0.02652 * 21 20 18 23 23 H 1.09000 * 109.46747 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47258 * 300.00107 * 1 2 3 25 25 H 1.08997 * 109.46871 * 60.00388 * 1 2 3 26 26 H 1.09005 * 109.47427 * 240.00220 * 2 1 3 27 27 H 1.08999 * 109.47323 * 119.99867 * 2 1 3 28 28 H 1.08997 * 109.47646 * 59.99974 * 3 2 1 29 29 H 1.09009 * 109.47452 * 299.99968 * 3 2 1 30 30 H 1.08999 * 109.47236 * 300.00013 * 4 3 2 31 31 H 1.08998 * 109.46824 * 60.00259 * 4 3 2 32 32 H 0.96996 * 120.00148 * 184.96277 * 9 8 6 33 33 H 1.07993 * 120.59727 * 0.02562 * 17 16 14 34 34 H 1.08001 * 120.42656 * 179.73823 * 20 18 17 35 35 H 1.08000 * 119.43466 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.4200 3.4199 -1.1714 7 1 3.9454 3.1255 -2.0957 8 6 5.4019 4.4088 -1.1764 9 7 6.2212 4.5248 -0.1587 10 14 5.5510 5.5695 -2.6325 11 1 4.5157 5.2324 -3.6423 12 1 5.3565 6.9681 -2.1728 13 1 6.8991 5.4311 -3.2398 14 6 4.1501 3.5056 1.1602 15 8 4.4979 4.6708 1.1542 16 6 3.8283 2.8372 2.4381 17 6 4.0639 3.4813 3.6118 18 6 3.7435 2.8229 4.8315 19 8 3.9356 3.3675 5.9073 20 6 3.1999 1.5152 4.7639 21 6 3.0023 0.9472 3.5559 22 8 3.3108 1.5964 2.4275 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 3.9330 0.9289 0.8908 31 1 3.9337 0.9287 -0.8891 32 1 6.8569 5.2567 -0.1288 33 1 4.4835 4.4764 3.6182 34 1 2.9475 0.9805 5.6677 35 1 2.5889 -0.0489 3.4990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147603541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:10 Heat of formation + Delta-G solvation = -65.331920 kcal Electronic energy + Delta-G solvation = -20739.260496 eV Core-core repulsion = 17511.202196 eV Total energy + Delta-G solvation = -3228.058300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.96053 -40.25303 -39.46275 -37.13496 -35.27355 -34.00205 -33.54204 -32.82678 -29.68403 -27.69518 -25.63350 -25.17733 -24.15069 -22.10915 -21.80249 -19.74681 -19.09498 -18.11231 -18.00259 -17.37462 -16.94923 -16.52129 -16.12388 -15.71891 -15.45078 -15.40348 -15.03925 -14.63074 -14.33774 -14.05858 -13.83205 -13.51553 -13.25314 -13.03454 -12.87227 -12.67912 -12.23370 -12.10721 -11.87498 -11.71916 -11.26935 -11.18724 -10.86156 -10.78974 -10.33878 -9.80562 -9.26138 -8.23312 -6.06824 -0.37047 0.14865 1.30273 1.42504 1.48054 1.56360 2.22401 2.29537 2.73246 2.87624 3.17526 3.49830 3.75097 3.78998 4.12402 4.22831 4.30961 4.36739 4.45277 4.58020 4.66528 4.82676 4.95297 5.04101 5.08788 5.14028 5.21643 5.27924 5.30752 5.46228 5.53540 5.66447 5.89541 6.10823 6.71196 6.73543 7.00467 7.40229 8.12440 8.67663 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.008433 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.882234 B = 3319.493174 C = 4873.468367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.120 4.120 4 C 0.090 3.910 5 N -0.423 5.423 6 C -0.321 4.321 7 H 0.113 0.887 8 C -0.018 4.018 9 N -0.808 5.808 10 Si 0.980 3.020 11 H -0.247 1.247 12 H -0.297 1.297 13 H -0.276 1.276 14 C 0.432 3.568 15 O -0.544 6.544 16 C 0.144 3.856 17 C -0.308 4.308 18 C 0.389 3.611 19 O -0.564 6.564 20 C -0.329 4.329 21 C 0.132 3.868 22 O -0.188 6.188 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.264 0.736 33 H 0.120 0.880 34 H 0.182 0.818 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -14.802 -1.108 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.159 4.159 4 C -0.032 4.032 5 N -0.139 5.139 6 C -0.449 4.449 7 H 0.130 0.870 8 C -0.227 4.227 9 N -0.446 5.446 10 Si 0.805 3.195 11 H -0.170 1.170 12 H -0.224 1.224 13 H -0.201 1.201 14 C 0.222 3.778 15 O -0.424 6.424 16 C 0.092 3.908 17 C -0.332 4.332 18 C 0.285 3.715 19 O -0.457 6.457 20 C -0.349 4.349 21 C 0.067 3.933 22 O -0.089 6.089 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.199 0.801 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -9.250 -14.065 -0.840 16.855 hybrid contribution 0.638 1.517 -0.059 1.647 sum -8.613 -12.547 -0.898 15.245 Atomic orbital electron populations 1.21758 0.95459 1.02151 1.01429 1.21433 0.96011 0.94228 1.03362 1.21924 0.93970 0.98847 1.01128 1.22273 0.95378 0.82230 1.03326 1.43608 1.53097 1.11640 1.05510 1.19968 1.17225 1.20611 0.87120 0.86958 1.26140 0.94647 1.01702 1.00234 1.70086 1.15125 1.28478 1.30909 0.85061 0.78658 0.77473 0.78337 1.17043 1.22416 1.20142 1.17343 0.91134 0.86972 0.82360 1.90666 1.49764 1.17485 1.84520 1.22761 0.90456 0.81678 0.95944 1.22952 1.12278 1.04393 0.93535 1.17925 0.77027 0.88825 0.87684 1.90691 1.52472 1.70167 1.32395 1.23027 1.12549 0.98006 1.01336 1.25453 0.88202 0.97555 0.82083 1.83714 1.65254 1.25194 1.34718 0.91198 0.92950 0.93774 0.91369 0.89703 0.93059 0.93495 0.88635 0.89842 0.92630 0.86221 0.80102 0.71410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.59 16 2 C -0.11 -1.89 5.93 30.59 0.18 -1.71 16 3 C -0.12 -3.16 4.91 30.59 0.15 -3.01 16 4 C 0.09 2.89 4.95 86.38 0.43 3.31 16 5 N -0.42 -19.48 2.60 -639.00 -1.66 -21.14 16 6 C -0.32 -16.06 9.43 84.25 0.79 -15.26 16 7 H 0.11 5.08 7.90 -2.91 -0.02 5.06 16 8 C -0.02 -0.96 4.49 85.06 0.38 -0.58 16 9 N -0.81 -47.33 10.32 21.73 0.22 -47.11 16 10 Si 0.98 42.32 29.60 68.60 2.03 44.36 16 11 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 12 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 13 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.43 22.04 6.88 86.76 0.60 22.64 16 15 O -0.54 -33.17 12.71 -4.05 -0.05 -33.22 16 16 C 0.14 5.96 6.60 24.26 0.16 6.12 16 17 C -0.31 -13.85 9.57 22.74 0.22 -13.63 16 18 C 0.39 15.71 6.81 24.14 0.16 15.87 16 19 O -0.56 -26.96 17.90 -5.64 -0.10 -27.06 16 20 C -0.33 -8.64 10.03 22.39 0.22 -8.42 16 21 C 0.13 2.49 11.36 67.06 0.76 3.25 16 22 O -0.19 -5.31 4.06 1.07 0.00 -5.30 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.45 6.84 -2.39 -0.02 1.43 16 29 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.10 2.75 5.28 -4.43 -0.02 2.73 16 31 H 0.08 2.52 7.98 -2.39 -0.02 2.51 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.12 6.22 7.59 -2.91 -0.02 6.20 16 34 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.27 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -78.82 298.24 6.30 -72.52 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.08 Total: 9.97 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.77 Total: 6.99 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -1.44 Total: -68.25 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -0.15 Total: -65.58 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.36 kcal Total: -78.82 6.30 -72.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147603541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.183 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds