Wall clock time and date at job start Mon Mar 30 2020 00:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34777 * 116.99838 * 2 1 4 4 O 1.21530 * 120.00511 * 0.02562 * 3 2 1 5 5 C 1.47312 * 119.99754 * 179.97438 * 3 2 1 6 6 C 1.39724 * 120.19842 * 89.98123 * 5 3 2 7 7 C 1.50702 * 120.05941 * 0.03676 * 6 5 3 8 8 C 1.38269 * 119.87874 * 179.74411 * 6 5 3 9 9 O 1.35951 * 119.86696 * 180.29169 * 8 6 5 10 10 C 1.42900 * 116.99805 * 180.25716 * 9 8 6 11 11 C 1.39089 * 120.26456 * 0.55424 * 8 6 5 12 12 C 1.37873 * 120.39321 * 359.43921 * 11 8 6 13 13 C 1.39077 * 120.12429 * 0.28160 * 12 11 8 14 14 N 1.38669 * 120.13621 * 180.02562 * 13 12 11 15 15 C 1.36773 * 120.00411 * 359.97438 * 14 13 12 16 16 H 1.08007 * 119.99652 * 0.02562 * 15 14 13 17 17 C 1.38838 * 120.00720 * 180.02562 * 15 14 13 18 18 N 1.31549 * 119.99807 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00221 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47132 * 90.00135 * 19 17 15 21 21 H 1.48503 * 109.47137 * 210.00214 * 19 17 15 22 22 H 1.48496 * 109.47283 * 329.99681 * 19 17 15 23 23 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47340 * 300.00187 * 1 2 3 25 25 H 1.09008 * 109.47048 * 60.00260 * 1 2 3 26 26 H 1.09009 * 109.47205 * 90.00176 * 7 6 5 27 27 H 1.08996 * 109.47335 * 210.00164 * 7 6 5 28 28 H 1.09001 * 109.47245 * 330.00439 * 7 6 5 29 29 H 1.09001 * 109.47012 * 300.00307 * 10 9 8 30 30 H 1.08998 * 109.47155 * 60.00169 * 10 9 8 31 31 H 1.09004 * 109.47261 * 180.02562 * 10 9 8 32 32 H 1.08002 * 119.80450 * 179.72328 * 11 8 6 33 33 H 1.08001 * 119.93460 * 180.30134 * 12 11 8 34 34 H 0.97007 * 120.00286 * 179.97438 * 14 13 12 35 35 H 0.96996 * 120.00147 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2202 0.0005 5 6 3.5349 1.2780 0.0006 6 6 4.2373 1.3141 -1.2068 7 6 3.4912 1.2751 -2.5156 8 6 5.6177 1.3918 -1.1985 9 8 6.3005 1.4329 -2.3734 10 6 7.7254 1.5072 -2.2934 11 6 6.3109 1.4225 0.0069 12 6 5.6291 1.3875 1.2047 13 6 4.2403 1.3152 1.2155 14 7 3.5542 1.2805 2.4201 15 6 4.2434 1.3170 3.6009 16 1 5.3220 1.3731 3.5952 17 6 3.5566 1.2817 4.8071 18 7 2.2429 1.2128 4.8141 19 14 4.4979 1.3322 6.4197 20 1 4.6739 2.7437 6.8462 21 1 3.7386 0.5920 7.4594 22 1 5.8293 0.7009 6.2357 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 3.2581 2.2921 -2.8314 27 1 4.1097 0.7925 -3.2722 28 1 2.5659 0.7127 -2.3898 29 1 8.0124 2.4110 -1.7559 30 1 8.1056 0.6335 -1.7641 31 1 8.1449 1.5343 -3.2991 32 1 7.3895 1.4788 0.0047 33 1 6.1746 1.4167 2.1364 34 1 2.5855 1.2304 2.4253 35 1 1.7630 1.1885 5.6567 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:36 Heat of formation + Delta-G solvation = -115.411785 kcal Electronic energy + Delta-G solvation = -20240.117173 eV Core-core repulsion = 17009.887247 eV Total energy + Delta-G solvation = -3230.229926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74463 -40.53906 -38.82796 -37.40490 -36.50092 -34.05589 -33.15121 -30.55511 -28.56575 -28.32793 -27.22896 -26.40865 -24.52803 -21.99292 -21.76480 -19.91063 -19.05274 -18.28804 -18.03833 -17.55649 -17.02074 -16.58695 -16.37946 -16.22466 -15.62954 -14.86079 -14.65557 -14.51617 -14.22483 -13.94105 -13.79136 -13.66027 -13.41434 -13.11294 -12.88053 -12.82376 -12.70565 -12.37772 -12.31053 -12.08049 -11.83409 -11.82118 -11.37487 -11.28443 -10.38021 -9.70130 -8.51936 -8.29123 -5.77617 0.27713 0.81652 1.03757 1.41246 1.48629 1.54771 1.85011 2.24979 2.71526 2.80334 3.23234 3.26794 3.91514 3.95576 4.15092 4.26323 4.28727 4.40471 4.54907 4.59465 4.61950 4.68809 4.71834 4.76860 4.83499 4.89553 5.17761 5.22889 5.28095 5.36626 5.52659 5.61116 5.75737 5.94799 6.66660 6.72678 6.77664 7.35760 7.49060 8.66838 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.007400 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.690338 B = 3782.950833 C = 5354.533762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.362 6.362 3 C 0.538 3.462 4 O -0.536 6.536 5 C -0.243 4.243 6 C -0.027 4.027 7 C -0.101 4.101 8 C 0.011 3.989 9 O -0.332 6.332 10 C 0.022 3.978 11 C -0.105 4.105 12 C -0.194 4.194 13 C 0.203 3.797 14 N -0.576 5.576 15 C -0.324 4.324 16 H 0.118 0.882 17 C -0.032 4.032 18 N -0.933 5.933 19 Si 1.005 2.995 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.252 1.252 23 H 0.135 0.865 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.156 0.844 33 H 0.132 0.868 34 H 0.384 0.616 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -2.543 -10.410 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.383 3.617 4 O -0.426 6.426 5 C -0.252 4.252 6 C -0.028 4.028 7 C -0.157 4.157 8 C -0.035 4.035 9 O -0.247 6.247 10 C -0.073 4.073 11 C -0.125 4.125 12 C -0.217 4.217 13 C 0.083 3.917 14 N -0.180 5.180 15 C -0.453 4.453 16 H 0.135 0.865 17 C -0.231 4.231 18 N -0.572 5.572 19 Si 0.827 3.173 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.176 1.176 23 H 0.153 0.847 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.217 0.783 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.981 -2.280 -10.152 12.002 hybrid contribution -0.662 0.175 1.282 1.454 sum 5.319 -2.106 -8.870 10.555 Atomic orbital electron populations 1.23590 0.75082 1.05833 1.02394 1.86725 1.24934 1.32657 1.83510 1.21299 0.89339 0.81167 0.69915 1.90767 1.67773 1.37184 1.46848 1.17903 0.87955 1.25848 0.93476 1.18795 0.91370 0.99292 0.93393 1.20636 0.99023 1.02431 0.93606 1.17961 0.90154 1.10100 0.85321 1.85934 1.21198 1.90565 1.27027 1.23207 0.77564 1.01548 1.04970 1.21277 1.00681 0.99996 0.90536 1.20428 0.90931 1.11435 0.98934 1.17955 0.92705 0.96647 0.84361 1.40880 1.07600 1.66667 1.02813 1.20148 0.93868 1.48261 0.83035 0.86495 1.26325 0.96569 0.96810 1.03360 1.69807 1.08089 1.50074 1.29187 0.84734 0.78260 0.78476 0.75801 1.19892 1.20740 1.17592 0.84659 0.93175 0.90852 0.90912 0.89031 0.92807 0.92573 0.92364 0.86456 0.82633 0.85024 0.78349 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 10.57 113.37 1.20 1.93 16 2 O -0.36 -14.63 10.58 -56.89 -0.60 -15.23 16 3 C 0.54 24.38 4.60 70.21 0.32 24.70 16 4 O -0.54 -26.36 16.90 19.74 0.33 -26.02 16 5 C -0.24 -10.93 5.77 -19.97 -0.12 -11.05 16 6 C -0.03 -1.05 5.93 -19.50 -0.12 -1.17 16 7 C -0.10 -3.23 9.39 71.24 0.67 -2.57 16 8 C 0.01 0.40 6.65 22.48 0.15 0.55 16 9 O -0.33 -9.69 9.52 -93.00 -0.89 -10.58 16 10 C 0.02 0.42 9.81 113.37 1.11 1.53 16 11 C -0.11 -3.56 9.02 22.39 0.20 -3.36 16 12 C -0.19 -7.93 9.28 22.38 0.21 -7.73 16 13 C 0.20 9.66 6.63 38.82 0.26 9.92 16 14 N -0.58 -30.71 5.35 -183.66 -0.98 -31.69 16 15 C -0.32 -17.08 9.55 84.07 0.80 -16.28 16 16 H 0.12 5.64 5.67 -2.91 -0.02 5.63 16 17 C -0.03 -1.67 5.50 84.88 0.47 -1.21 16 18 N -0.93 -52.68 13.05 21.65 0.28 -52.40 16 19 Si 1.00 40.79 29.55 68.60 2.03 42.82 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 23 H 0.14 3.00 8.14 -2.39 -0.02 2.99 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.09 2.56 7.53 -2.39 -0.02 2.54 16 28 H 0.05 1.72 7.09 -2.39 -0.02 1.70 16 29 H 0.06 1.00 7.65 -2.39 -0.02 0.98 16 30 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 31 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.16 3.96 6.26 -2.91 -0.02 3.94 16 33 H 0.13 5.19 5.94 -2.91 -0.02 5.18 16 34 H 0.38 21.97 6.73 -92.70 -0.62 21.34 16 35 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -66.70 302.48 5.84 -60.86 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.51 Total: 36.97 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.16 Total: -4.72 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -0.70 Total: -84.09 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.15 Total: -51.83 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -66.70 5.84 -60.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.552 kcal (2) G-P(sol) polarization free energy of solvation -66.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds