Wall clock time and date at job start Sun Mar 29 2020 23:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29579 * 1 3 3 Si 1.86803 * 119.99741 * 2 1 4 4 H 1.48501 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47172 * 300.00507 * 3 2 1 6 6 H 1.48504 * 109.46891 * 60.00299 * 3 2 1 7 7 C 1.46484 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.38611 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.41209 * 127.16268 * 354.01356 * 9 7 2 11 11 N 1.33143 * 109.22867 * 180.02562 * 10 9 7 12 12 H 0.97002 * 124.41050 * 179.97438 * 11 10 9 13 13 C 1.38560 * 111.18024 * 0.02562 * 11 10 9 14 14 C 1.38986 * 132.63912 * 179.97438 * 13 11 10 15 15 C 1.38233 * 120.19685 * 180.02562 * 14 13 11 16 16 C 1.38200 * 120.72371 * 0.02562 * 15 14 13 17 17 C 1.39088 * 120.06482 * 359.97438 * 16 15 14 18 18 N 1.39014 * 120.25458 * 180.02562 * 17 16 15 19 19 C 1.41273 * 119.99962 * 319.76875 * 18 17 16 20 20 C 1.38927 * 126.03776 * 354.58387 * 19 18 17 21 21 C 1.39026 * 107.97969 * 179.87040 * 20 19 18 22 22 C 1.38508 * 108.05605 * 0.39837 * 21 20 19 23 23 C 1.38935 * 126.03675 * 174.89616 * 19 18 17 24 24 H 1.08007 * 126.01032 * 359.95980 * 23 19 18 25 25 C 1.39717 * 119.48779 * 0.02601 * 17 16 15 26 26 H 0.97003 * 120.00625 * 359.97438 * 1 2 3 27 27 H 1.07998 * 125.39136 * 359.74617 * 10 9 7 28 28 H 1.08005 * 119.89900 * 0.02618 * 14 13 11 29 29 H 1.07996 * 119.63684 * 179.97438 * 15 14 13 30 30 H 1.07999 * 119.96564 * 179.97438 * 16 15 14 31 31 H 0.97008 * 119.99850 * 139.77346 * 18 17 16 32 32 H 1.08005 * 126.00887 * 0.02562 * 20 19 18 33 33 H 1.07997 * 125.96909 * 180.14421 * 21 20 19 34 34 H 1.07988 * 125.96794 * 179.76035 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2297 1.6178 0.0000 4 1 3.6898 1.3465 -0.0006 5 1 1.8709 2.3966 -1.2124 6 1 1.8710 2.3964 1.2126 7 6 2.0283 -1.2686 -0.0006 8 1 3.1082 -1.2685 -0.0010 9 6 1.3352 -2.4690 -0.0016 10 6 -0.0606 -2.6482 0.1151 11 7 -0.3407 -3.9491 0.0719 12 1 -1.2351 -4.3196 0.1336 13 6 0.8117 -4.7049 -0.0715 14 6 1.0346 -6.0738 -0.1630 15 6 2.3205 -6.5609 -0.3039 16 6 3.4001 -5.6997 -0.3552 17 6 3.2007 -4.3262 -0.2655 18 7 4.2838 -3.4563 -0.3172 19 6 5.4842 -3.7823 0.3524 20 6 5.6859 -4.8789 1.1812 21 6 6.9990 -4.8372 1.6361 22 6 7.6044 -3.7138 1.0978 23 6 6.6697 -3.0595 0.3034 24 1 6.8361 -2.1495 -0.2540 25 6 1.9033 -3.8275 -0.1230 26 1 -0.4851 0.8400 0.0004 27 1 -0.7858 -1.8558 0.2266 28 1 0.2005 -6.7588 -0.1240 29 1 2.4833 -7.6263 -0.3737 30 1 4.3997 -6.0937 -0.4651 31 1 4.2152 -2.6253 -0.8132 32 1 4.9525 -5.6328 1.4266 33 1 7.4643 -5.5533 2.2973 34 1 8.6242 -3.4009 1.2658 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171364223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:06 Heat of formation + Delta-G solvation = 82.746933 kcal Electronic energy + Delta-G solvation = -18920.745488 eV Core-core repulsion = 16090.480212 eV Total energy + Delta-G solvation = -2830.265277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.28901 -36.04305 -34.26884 -32.51031 -31.53616 -28.59079 -26.60682 -26.08291 -24.20117 -23.39316 -22.68039 -19.70304 -19.10655 -18.25480 -16.45238 -15.88156 -15.09506 -14.57844 -14.19337 -13.65064 -13.22115 -12.76378 -12.17396 -11.80213 -11.52988 -11.38057 -10.35726 -10.30726 -10.09251 -9.94248 -9.67845 -9.54731 -9.19040 -8.92000 -8.63001 -8.60472 -8.45369 -8.36282 -8.29654 -8.10348 -7.46325 -6.37404 -5.60251 -5.53554 -5.04111 -4.11673 -3.30546 -2.58427 3.78415 3.93908 3.98656 4.18880 4.26382 5.06486 5.31807 5.90699 6.22731 6.41882 6.49046 6.65092 6.91078 7.16660 7.46308 7.79992 7.88764 8.14230 8.23399 8.32695 8.49628 8.53121 8.59751 8.66960 8.84188 8.87813 8.97827 9.08071 9.10915 9.30228 9.62403 9.79241 9.85112 9.88596 10.16443 10.21013 10.31002 10.38735 10.62310 10.83535 11.09195 11.20738 11.42287 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.008401 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.734551 B = 3332.064757 C = 5190.063793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.053 3.947 3 Si 0.909 3.091 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.420 4.420 8 H 0.079 0.921 9 C 0.037 3.963 10 C -0.148 4.148 11 N -0.583 5.583 12 H 0.383 0.617 13 C 0.104 3.896 14 C -0.224 4.224 15 C -0.079 4.079 16 C -0.242 4.242 17 C 0.279 3.721 18 N -0.670 5.670 19 C 0.045 3.955 20 C -0.280 4.280 21 C -0.262 4.262 22 C -0.260 4.260 23 C -0.296 4.296 24 H 0.063 0.937 25 C -0.181 4.181 26 H 0.268 0.732 27 H 0.175 0.825 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.390 0.610 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -0.721 -2.799 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.453 4.453 8 H 0.097 0.903 9 C 0.032 3.968 10 C -0.273 4.273 11 N -0.183 5.183 12 H 0.215 0.785 13 C -0.007 4.007 14 C -0.248 4.248 15 C -0.099 4.099 16 C -0.266 4.266 17 C 0.174 3.826 18 N -0.290 5.290 19 C -0.046 4.046 20 C -0.301 4.301 21 C -0.281 4.281 22 C -0.279 4.279 23 C -0.317 4.317 24 H 0.081 0.919 25 C -0.190 4.190 26 H 0.079 0.921 27 H 0.192 0.808 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.224 0.776 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.196 -0.504 -2.705 8.646 hybrid contribution -0.115 0.985 -0.003 0.992 sum -8.312 0.481 -2.708 8.755 Atomic orbital electron populations 1.68951 1.08240 1.27472 1.39411 1.27076 0.94292 1.00551 0.94171 0.86193 0.81860 0.81048 0.77313 1.18002 1.20851 1.20728 1.19778 0.93836 0.88220 1.43444 0.90312 1.17925 0.90357 0.89235 0.99320 1.22597 0.97735 0.82668 1.24279 1.40647 1.05179 1.06541 1.65900 0.78519 1.17954 0.86520 0.91673 1.04574 1.19347 0.95892 0.91099 1.18432 1.20116 0.91881 0.96934 1.00970 1.20533 0.98246 0.92279 1.15582 1.17131 0.85362 0.89377 0.90728 1.41716 1.10387 1.21582 1.55337 1.17440 0.84774 1.00011 1.02409 1.20014 0.96404 1.02474 1.11185 1.19959 0.96188 1.01485 1.10494 1.19869 0.95553 1.01585 1.10874 1.19757 0.94900 1.02872 1.14206 0.91854 1.19233 0.91311 0.94958 1.13544 0.92053 0.80790 0.89671 0.88718 0.86912 0.77565 0.90442 0.92072 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -30.33 10.50 55.98 0.59 -29.74 16 2 C 0.05 2.03 5.66 -15.18 -0.09 1.94 16 3 Si 0.91 30.00 29.64 -169.99 -5.04 24.96 16 4 H -0.26 -8.77 7.11 56.52 0.40 -8.37 16 5 H -0.28 -8.88 7.11 56.52 0.40 -8.48 16 6 H -0.28 -8.96 7.11 56.52 0.40 -8.56 16 7 C -0.42 -17.58 9.31 -36.12 -0.34 -17.92 16 8 H 0.08 3.38 6.09 -52.49 -0.32 3.06 16 9 C 0.04 1.56 6.10 -104.75 -0.64 0.92 16 10 C -0.15 -5.79 10.93 -15.86 -0.17 -5.96 16 11 N -0.58 -20.81 5.86 -9.76 -0.06 -20.86 16 12 H 0.38 11.80 8.96 -40.82 -0.37 11.44 16 13 C 0.10 3.96 7.22 -83.83 -0.61 3.35 16 14 C -0.22 -7.82 10.07 -39.31 -0.40 -8.22 16 15 C -0.08 -2.78 10.00 -39.60 -0.40 -3.18 16 16 C -0.24 -9.47 7.84 -39.28 -0.31 -9.78 16 17 C 0.28 11.63 6.18 -83.74 -0.52 11.11 16 18 N -0.67 -28.73 5.10 -7.96 -0.04 -28.77 16 19 C 0.05 2.02 6.78 -82.99 -0.56 1.46 16 20 C -0.28 -12.50 8.94 -39.03 -0.35 -12.85 16 21 C -0.26 -11.40 10.88 -39.19 -0.43 -11.83 16 22 C -0.26 -11.25 10.88 -39.19 -0.43 -11.68 16 23 C -0.30 -13.14 10.90 -39.03 -0.43 -13.57 16 24 H 0.06 2.69 8.06 -52.48 -0.42 2.26 16 25 C -0.18 -7.51 6.28 -104.74 -0.66 -8.17 16 26 H 0.27 9.16 8.27 -40.82 -0.34 8.83 16 27 H 0.18 6.74 5.84 -52.49 -0.31 6.44 16 28 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 29 H 0.09 2.95 8.06 -52.49 -0.42 2.52 16 30 H 0.11 4.51 6.53 -52.49 -0.34 4.16 16 31 H 0.39 16.43 7.26 -40.82 -0.30 16.14 16 32 H 0.08 3.41 6.36 -52.48 -0.33 3.07 16 33 H 0.06 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.06 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -2.00 -85.92 290.02 -9.70 -95.61 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: -3.21 Total: 38.78 kcal Atomic # 6 Polarization: -78.05 SS G_CDS: -6.31 Total: -84.35 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: 0.49 Total: -79.37 kcal Atomic # 14 Polarization: 30.00 SS G_CDS: -5.04 Total: 24.96 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -85.92 -9.70 -95.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171364223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.358 kcal (2) G-P(sol) polarization free energy of solvation -85.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds