Wall clock time and date at job start Mon Mar 30 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21281 * 119.99806 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00091 * 180.02562 * 14 13 3 17 17 H 1.08996 * 115.54887 * 325.57386 * 16 14 13 18 18 C 1.52995 * 117.50098 * 111.24799 * 16 14 13 19 19 C 1.53005 * 117.49862 * 179.90691 * 16 14 13 20 20 H 1.08999 * 117.49704 * 0.02562 * 19 16 14 21 21 C 1.52995 * 117.49598 * 145.01523 * 19 16 14 22 22 F 1.39895 * 109.47108 * 60.00837 * 21 19 16 23 23 F 1.39904 * 109.47054 * 180.02562 * 21 19 16 24 24 F 1.39899 * 109.47477 * 300.00145 * 21 19 16 25 25 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.09001 * 117.50021 * 214.97434 * 18 16 14 33 33 H 1.09009 * 117.49929 * 0.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0368 3.3386 2.6546 17 1 0.4286 2.8837 3.5642 18 6 -0.1189 4.8605 2.6363 19 6 -1.3574 3.9651 2.7219 20 1 -1.9867 3.8892 1.8352 21 6 -2.0947 3.9055 4.0612 22 9 -1.3436 4.5695 5.0369 23 9 -3.3438 4.5225 3.9338 24 9 -2.2711 2.5696 4.4374 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 0.1701 5.4068 3.5341 33 1 0.0664 5.3741 1.6928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182326556.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:23 Heat of formation + Delta-G solvation = -177.551055 kcal Electronic energy + Delta-G solvation = -20494.904515 eV Core-core repulsion = 16720.123288 eV Total energy + Delta-G solvation = -3774.781227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.17753 -47.72632 -47.64047 -39.58634 -36.77613 -34.90915 -32.42713 -30.96147 -27.60713 -26.83749 -24.20599 -22.75471 -21.79839 -20.14571 -19.43624 -18.70699 -18.40959 -17.79828 -17.10770 -15.73343 -15.44047 -14.76590 -14.69149 -14.54510 -14.39004 -14.10644 -13.86881 -13.82631 -13.55433 -13.44751 -12.72583 -12.42715 -12.11570 -11.77939 -11.58540 -11.30341 -11.08370 -10.95961 -10.86696 -10.65857 -10.35720 -10.20999 -9.67734 -9.17810 -9.08536 -8.54573 -7.91493 -6.16546 -4.26337 2.58166 2.76602 3.21731 3.28847 3.30465 3.44603 3.57061 3.86625 4.13441 4.30356 4.37496 4.53690 4.73527 5.00523 5.14894 5.33371 5.53213 5.74590 5.78988 6.36237 6.42361 6.62155 7.00354 7.14722 7.30641 7.37087 7.56941 7.67530 7.84388 8.13238 8.57504 8.71412 9.02415 9.41021 10.88731 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.036698 B = 0.004477 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.809653 B = 6252.433721 C = 6616.386558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.530 3.470 15 O -0.545 6.545 16 C -0.155 4.155 17 H 0.129 0.871 18 C -0.122 4.122 19 C -0.204 4.204 20 H 0.159 0.841 21 C 0.485 3.515 22 F -0.183 7.183 23 F -0.180 7.180 24 F -0.178 7.178 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.023 0.977 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.117 0.883 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 6.698 11.451 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.314 3.686 15 O -0.424 6.424 16 C -0.177 4.177 17 H 0.147 0.853 18 C -0.159 4.159 19 C -0.224 4.224 20 H 0.176 0.824 21 C 0.431 3.569 22 F -0.165 7.165 23 F -0.161 7.161 24 F -0.160 7.160 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.135 0.865 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.373 6.548 10.594 14.473 hybrid contribution 1.101 -0.181 0.545 1.242 sum -6.272 6.367 11.139 14.282 Atomic orbital electron populations 1.21845 0.98319 0.98177 1.01197 1.21948 0.92641 0.99731 1.02413 1.18839 0.94332 0.89224 0.80749 0.93209 1.21220 0.90590 1.39071 1.06502 0.92024 1.24885 0.98660 0.94739 0.95348 1.69893 1.35172 1.37402 1.09439 0.86446 0.84778 0.78468 0.77402 1.20527 1.21061 1.19849 1.46417 1.14139 1.55216 1.18754 1.19150 0.83103 0.79308 0.87076 1.90688 1.51541 1.60131 1.40017 1.22494 0.96855 0.97504 1.00807 0.85318 1.23194 0.95541 0.91457 1.05721 1.23403 0.92816 1.10260 0.95876 0.82369 1.19550 0.77465 0.73539 0.86307 1.93152 1.76240 1.81040 1.66057 1.93184 1.43765 1.83042 1.96096 1.93209 1.95469 1.34716 1.92590 0.94291 0.93147 0.95759 0.88179 0.94956 0.92510 0.77711 0.86468 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.52 37.16 0.32 -2.71 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.55 2.24 -69.09 -0.16 6.39 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.19 11.28 55.43 0.63 -23.56 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.70 -13.66 5.02 -54.93 -0.28 -13.94 16 14 C 0.53 9.72 6.18 -10.98 -0.07 9.66 16 15 O -0.54 -11.86 13.40 5.56 0.07 -11.78 16 16 C -0.16 -2.07 5.83 -91.77 -0.54 -2.60 16 17 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 18 C -0.12 -1.32 9.63 -26.70 -0.26 -1.58 16 19 C -0.20 -2.50 5.41 -90.58 -0.49 -2.99 16 20 H 0.16 2.09 7.67 -51.93 -0.40 1.69 16 21 C 0.49 5.74 3.36 37.15 0.12 5.87 16 22 F -0.18 -2.06 15.89 2.25 0.04 -2.02 16 23 F -0.18 -2.16 17.32 2.25 0.04 -2.12 16 24 F -0.18 -2.33 17.27 2.25 0.04 -2.30 16 25 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 26 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 6.59 8.54 -40.82 -0.35 6.24 16 32 H 0.12 1.03 7.22 -51.93 -0.37 0.65 16 33 H 0.12 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -28.46 290.73 -5.46 -33.92 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -3.76 Total: 5.81 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.60 Total: -3.50 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.35 Total: -37.50 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.44 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.46 -5.46 -33.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182326556.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.632 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds