Wall clock time and date at job start Mon Mar 30 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21281 * 119.99806 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00091 * 180.02562 * 14 13 3 17 17 H 1.08996 * 115.54887 * 325.57386 * 16 14 13 18 18 C 1.52995 * 117.50098 * 111.24799 * 16 14 13 19 19 C 1.53005 * 117.49862 * 179.90691 * 16 14 13 20 20 H 1.08999 * 117.49704 * 0.02562 * 19 16 14 21 21 C 1.52995 * 117.49598 * 145.01523 * 19 16 14 22 22 F 1.39895 * 109.47108 * 60.00837 * 21 19 16 23 23 F 1.39904 * 109.47054 * 180.02562 * 21 19 16 24 24 F 1.39899 * 109.47477 * 300.00145 * 21 19 16 25 25 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.09001 * 117.50021 * 214.97434 * 18 16 14 33 33 H 1.09009 * 117.49929 * 0.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0368 3.3386 2.6546 17 1 0.4286 2.8837 3.5642 18 6 -0.1189 4.8605 2.6363 19 6 -1.3574 3.9651 2.7219 20 1 -1.9867 3.8892 1.8352 21 6 -2.0947 3.9055 4.0612 22 9 -1.3436 4.5695 5.0369 23 9 -3.3438 4.5225 3.9338 24 9 -2.2711 2.5696 4.4374 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 0.1701 5.4068 3.5341 33 1 0.0664 5.3741 1.6928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182326556.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:22 Heat of formation + Delta-G solvation = -194.738762 kcal Electronic energy + Delta-G solvation = -20495.649830 eV Core-core repulsion = 16720.123288 eV Total energy + Delta-G solvation = -3775.526542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.11833 -48.64275 -48.60819 -41.02474 -38.07080 -36.60499 -34.28813 -32.77958 -29.23821 -28.10603 -25.68311 -24.42542 -22.77610 -21.76867 -21.07237 -19.77618 -19.38020 -18.82032 -18.63216 -17.34597 -17.18083 -16.28684 -16.21053 -15.57910 -15.49300 -15.09511 -15.04639 -14.82327 -14.77158 -14.64985 -14.50620 -13.87425 -13.57727 -13.40232 -13.15064 -12.91526 -12.71021 -12.66044 -12.17198 -12.12930 -11.88806 -11.75885 -11.57990 -11.04567 -10.73457 -10.50850 -9.64713 -8.15239 -6.32373 1.46282 1.47012 1.50365 1.57130 1.64644 2.21386 2.40846 2.52272 2.87039 2.99297 3.14935 3.32498 3.52615 3.75239 3.99235 4.11263 4.49361 4.57300 4.57891 4.76041 4.79524 4.88864 5.07096 5.26410 5.43338 5.56170 5.62491 5.79791 5.92189 6.17498 6.75710 6.96772 7.34393 7.55732 8.90044 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.036698 B = 0.004477 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.809653 B = 6252.433721 C = 6616.386558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.697 5.697 14 C 0.527 3.473 15 O -0.584 6.584 16 C -0.161 4.161 17 H 0.156 0.844 18 C -0.097 4.097 19 C -0.205 4.205 20 H 0.146 0.854 21 C 0.494 3.506 22 F -0.175 7.175 23 F -0.181 7.181 24 F -0.186 7.186 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.406 0.594 32 H 0.148 0.852 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 7.494 13.489 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.345 5.345 14 C 0.313 3.687 15 O -0.466 6.466 16 C -0.182 4.182 17 H 0.173 0.827 18 C -0.134 4.134 19 C -0.225 4.225 20 H 0.163 0.837 21 C 0.440 3.560 22 F -0.157 7.157 23 F -0.162 7.162 24 F -0.167 7.167 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.166 0.834 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.601 7.360 12.679 16.078 hybrid contribution 0.800 -0.396 -0.102 0.899 sum -5.800 6.965 12.577 15.503 Atomic orbital electron populations 1.21685 0.97020 0.99157 1.00288 1.21805 0.93712 0.99296 1.01353 1.18392 0.93707 0.89114 0.81337 0.98129 1.21579 0.91376 1.38762 1.06799 0.90894 1.25750 1.03185 0.94399 0.95054 1.70048 1.37035 1.38302 1.09993 0.85387 0.79262 0.78855 0.77080 1.19846 1.21416 1.18792 1.46162 1.15250 1.55393 1.17719 1.19905 0.81960 0.78397 0.88410 1.90675 1.52467 1.61338 1.42086 1.22343 0.98083 0.99152 0.98632 0.82683 1.23373 0.93264 0.89710 1.07068 1.23341 0.92610 1.10713 0.95821 0.83663 1.19356 0.77352 0.73242 0.86057 1.93168 1.75997 1.80812 1.65689 1.93186 1.43890 1.83018 1.96104 1.93199 1.95513 1.35379 1.92641 0.93711 0.95456 0.93725 0.90994 0.94048 0.92640 0.75917 0.83372 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.52 71.98 0.61 -4.90 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.28 13.74 2.24 44.25 0.10 13.84 16 4 H 0.00 0.05 7.58 -2.38 -0.02 0.03 16 5 C -0.55 -27.97 8.73 25.60 0.22 -27.74 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.92 -51.43 11.28 21.45 0.24 -51.19 16 9 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.70 -26.93 5.02 -446.10 -2.24 -29.17 16 14 C 0.53 19.05 6.18 87.66 0.54 19.59 16 15 O -0.58 -25.90 13.40 -3.03 -0.04 -25.94 16 16 C -0.16 -3.93 5.83 -11.54 -0.07 -4.00 16 17 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 18 C -0.10 -1.83 9.63 30.62 0.29 -1.53 16 19 C -0.21 -4.64 5.41 -10.77 -0.06 -4.70 16 20 H 0.15 3.74 7.67 -2.39 -0.02 3.72 16 21 C 0.49 10.52 3.36 71.98 0.24 10.76 16 22 F -0.18 -3.35 15.89 44.97 0.71 -2.63 16 23 F -0.18 -4.01 17.32 44.97 0.78 -3.23 16 24 F -0.19 -4.49 17.27 44.97 0.78 -3.71 16 25 H 0.04 1.90 5.65 -2.38 -0.01 1.89 16 26 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 3.91 5.94 -2.38 -0.01 3.90 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 31 H 0.41 13.06 8.54 -92.71 -0.79 12.27 16 32 H 0.15 1.93 7.22 -2.39 -0.02 1.91 16 33 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -62.41 290.73 5.12 -57.29 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.36 Total: 18.63 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 2.50 Total: -3.13 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -2.00 Total: -80.36 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.04 Total: -25.94 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 2.27 Total: -9.58 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -62.41 5.12 -57.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182326556.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.446 kcal (2) G-P(sol) polarization free energy of solvation -62.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds