Wall clock time and date at job start Mon Mar 30 2020 00:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47429 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.47116 * 30.00463 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99992 * 3 2 1 7 7 C 1.37878 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00161 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 H 1.08995 * 115.54871 * 34.13521 * 15 13 12 17 17 C 1.52999 * 117.49844 * 248.46973 * 15 13 12 18 18 C 1.52996 * 117.49546 * 179.81078 * 15 13 12 19 19 H 1.08995 * 117.50529 * 359.97438 * 18 15 13 20 20 C 1.53008 * 117.49622 * 215.00101 * 18 15 13 21 21 F 1.39893 * 109.47082 * 59.99922 * 20 18 15 22 22 F 1.39895 * 109.46910 * 180.02562 * 20 18 15 23 23 F 1.39907 * 109.46949 * 300.00052 * 20 18 15 24 24 H 0.96990 * 120.00275 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 26 26 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 27 27 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 28 28 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 29 29 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 30 30 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 31 31 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 32 32 H 1.09007 * 117.49732 * 359.97438 * 17 15 13 33 33 H 1.08998 * 117.49972 * 145.01907 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0014 11 6 5.5516 -2.6365 -0.0001 12 7 6.0400 -4.0176 -0.0009 13 6 7.3651 -4.2639 0.0005 14 8 8.1532 -3.3420 0.0019 15 6 7.8675 -5.6847 -0.0065 16 1 7.2579 -6.3961 -0.5636 17 6 8.5699 -6.1919 1.2546 18 6 9.3825 -5.8982 -0.0090 19 1 10.0158 -5.0112 -0.0060 20 6 9.9260 -7.0941 -0.7935 21 9 9.5679 -6.9701 -2.1402 22 9 11.3201 -7.1298 -0.6826 23 9 9.3868 -8.2762 -0.2746 24 1 -0.4850 0.8399 0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8753 -0.6796 -0.8895 27 1 3.6586 -3.1493 -0.8920 28 1 3.6580 -3.1512 0.8880 29 1 5.9143 -2.1237 0.8907 30 1 5.9157 -2.1215 -0.8892 31 1 5.4097 -4.7549 -0.0016 32 1 8.6690 -5.4977 2.0892 33 1 8.4228 -7.2370 1.5268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182328980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:04 Heat of formation + Delta-G solvation = -183.290070 kcal Electronic energy + Delta-G solvation = -19354.730606 eV Core-core repulsion = 15579.700517 eV Total energy + Delta-G solvation = -3775.030090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.43371 -47.97600 -47.90189 -40.15519 -37.14315 -35.52245 -33.38813 -31.53458 -28.11200 -27.08252 -24.59494 -22.56673 -22.02123 -20.83288 -19.95706 -18.94528 -18.65798 -18.15599 -17.16895 -16.66455 -15.85076 -15.54206 -14.91918 -14.79309 -14.45438 -14.36151 -14.34557 -14.08480 -14.06550 -13.96337 -13.61887 -12.81223 -12.74982 -12.13879 -12.11321 -11.98459 -11.40152 -11.18246 -11.15083 -10.93364 -10.32356 -10.05327 -9.84994 -9.68159 -9.27269 -9.01666 -8.59135 -6.09784 -4.08918 2.14342 2.30428 2.85947 3.09706 3.28574 3.36362 3.39893 3.49513 3.61464 3.94211 4.14353 4.34405 4.41095 4.56885 4.69244 5.09160 5.24178 5.32756 5.38857 5.48709 5.56815 5.92904 6.22213 6.36856 6.58843 6.71839 7.17255 7.30729 7.45697 7.72086 8.11731 8.46306 8.93829 9.52265 11.03454 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.050722 B = 0.002949 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.900414 B = 9491.513825 C = 9664.676246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.716 5.716 13 C 0.539 3.461 14 O -0.540 6.540 15 C -0.159 4.159 16 H 0.136 0.864 17 C -0.118 4.118 18 C -0.201 4.201 19 H 0.160 0.840 20 C 0.486 3.514 21 F -0.177 7.177 22 F -0.177 7.177 23 F -0.182 7.182 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.403 0.597 32 H 0.120 0.880 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.152 -15.795 0.927 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.366 5.366 13 C 0.324 3.676 14 O -0.418 6.418 15 C -0.181 4.181 16 H 0.154 0.846 17 C -0.156 4.156 18 C -0.220 4.220 19 H 0.177 0.823 20 C 0.432 3.568 21 F -0.159 7.159 22 F -0.158 7.158 23 F -0.163 7.163 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.237 0.763 32 H 0.138 0.862 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 19.548 -15.013 0.904 24.665 hybrid contribution 0.075 0.366 -0.288 0.472 sum 19.623 -14.647 0.615 24.494 Atomic orbital electron populations 1.69905 1.06331 1.27016 1.50886 1.25030 0.94749 0.99257 0.94426 0.86773 0.80375 0.83515 0.78611 1.20220 1.21341 1.18917 1.21088 0.89273 0.94534 1.51239 0.90990 1.19501 0.97322 0.91383 0.96689 1.21716 0.90407 1.01176 1.01865 1.21722 0.96339 0.80724 1.02142 1.46052 1.06233 1.10372 1.73950 1.19316 0.82910 0.88786 0.76616 1.90723 1.55485 1.45602 1.49982 1.22361 0.93265 0.97759 1.04683 0.84609 1.23257 0.97375 1.04259 0.90680 1.23433 0.96217 0.99081 1.03276 0.82250 1.19474 0.75782 0.83425 0.78135 1.93219 1.91565 1.95949 1.35139 1.93199 1.30055 1.96710 1.95874 1.93171 1.85897 1.50674 1.86562 0.92648 0.96290 0.96722 0.92002 0.91989 0.91578 0.91550 0.76298 0.86152 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 11 C 0.11 1.75 5.67 -4.04 -0.02 1.73 16 12 N -0.72 -8.82 5.56 -60.29 -0.33 -9.16 16 13 C 0.54 6.81 7.61 -10.98 -0.08 6.72 16 14 O -0.54 -8.90 16.26 5.55 0.09 -8.81 16 15 C -0.16 -1.39 5.83 -91.77 -0.54 -1.92 16 16 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.12 -0.81 9.63 -26.69 -0.26 -1.06 16 18 C -0.20 -1.71 5.41 -90.58 -0.49 -2.20 16 19 H 0.16 1.48 7.67 -51.93 -0.40 1.08 16 20 C 0.49 4.29 3.36 37.16 0.12 4.42 16 21 F -0.18 -1.80 17.27 2.25 0.04 -1.77 16 22 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 23 F -0.18 -1.54 15.90 2.25 0.04 -1.50 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.40 3.85 8.47 -40.82 -0.35 3.51 16 32 H 0.12 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.12 0.63 7.22 -51.93 -0.38 0.25 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -32.05 299.72 -5.47 -37.52 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.01 Total: -1.41 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.95 Total: -7.83 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.44 Total: -35.85 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.11 Total: -4.90 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.05 -5.47 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182328980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.770 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds