Wall clock time and date at job start Sun Mar 29 2020 23:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00093 * 2 1 4 4 H 1.48506 * 109.47470 * 240.00149 * 3 2 1 5 5 H 1.48502 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46816 * 120.00334 * 3 2 1 7 7 C 1.39945 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99738 * 162.60772 * 7 2 1 9 9 C 1.41431 * 119.99722 * 342.60267 * 7 2 1 10 10 C 1.40787 * 120.17550 * 154.91247 * 9 7 2 11 11 C 1.37712 * 120.04220 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41075 * 359.74104 * 11 10 9 13 13 C 1.39886 * 120.35889 * 0.51709 * 12 11 10 14 14 C 1.47881 * 120.02603 * 179.76270 * 13 12 11 15 15 O 1.21552 * 119.99638 * 179.44879 * 14 13 12 16 16 N 1.34778 * 120.00264 * 359.72683 * 14 13 12 17 17 C 1.46500 * 119.99908 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46794 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.47188 * 304.99898 * 18 17 16 20 20 O 1.42903 * 109.47180 * 64.99797 * 18 17 16 21 21 C 1.52996 * 109.47161 * 184.99483 * 18 17 16 22 22 O 1.42899 * 109.47304 * 174.99979 * 21 18 17 23 23 C 1.39035 * 119.94724 * 359.48738 * 13 12 11 24 24 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.97705 * 0.04615 * 10 9 7 26 26 H 1.07995 * 119.79395 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.82182 * 180.25972 * 12 11 10 28 28 H 0.96999 * 119.99975 * 359.97438 * 16 14 13 29 29 H 1.08996 * 109.46931 * 299.98883 * 17 16 14 30 30 H 1.08995 * 109.47563 * 60.00044 * 17 16 14 31 31 H 0.96700 * 113.99720 * 59.99916 * 20 18 17 32 32 H 1.09003 * 109.47254 * 295.00218 * 21 18 17 33 33 H 1.08999 * 109.46730 * 55.00132 * 21 18 17 34 34 H 0.96697 * 113.99936 * 180.02562 * 22 21 18 35 35 H 1.07996 * 120.19960 * 180.23435 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0510 -1.2332 -0.2801 9 6 1.3493 -2.4089 0.3652 10 6 1.8188 -3.6485 -0.1094 11 6 1.1750 -4.8122 0.2480 12 6 0.0684 -4.7740 1.0778 13 6 -0.4158 -3.5514 1.5548 14 6 -1.6022 -3.5187 2.4370 15 8 -2.0165 -2.4568 2.8592 16 7 -2.2207 -4.6668 2.7774 17 6 -3.3963 -4.6343 3.6509 18 6 -3.9021 -6.0603 3.8785 19 1 -4.0885 -6.5376 2.9165 20 8 -2.9174 -6.8059 4.5973 21 6 -5.2003 -6.0181 4.6870 22 8 -5.7342 -7.3387 4.8001 23 6 0.2227 -2.3673 1.2033 24 1 -0.4849 0.8401 0.0004 25 1 2.6846 -3.6867 -0.7538 26 1 1.5388 -5.7609 -0.1180 27 1 -0.4267 -5.6928 1.3554 28 1 -1.8879 -5.5144 2.4434 29 1 -3.1259 -4.1874 4.6075 30 1 -4.1814 -4.0414 3.1817 31 1 -2.7014 -6.4378 5.4650 32 1 -4.9960 -5.6222 5.6819 33 1 -5.9221 -5.3764 4.1818 34 1 -6.5597 -7.3876 5.3013 35 1 -0.1454 -1.4214 1.5723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:14 Heat of formation + Delta-G solvation = -152.958118 kcal Electronic energy + Delta-G solvation = -19310.804417 eV Core-core repulsion = 16078.946359 eV Total energy + Delta-G solvation = -3231.858057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99849 -39.34534 -38.66978 -36.89922 -35.68772 -35.24656 -32.35820 -31.31683 -30.92450 -27.37740 -26.60173 -23.90324 -22.97191 -22.67673 -21.15276 -19.56816 -18.64072 -17.92960 -17.52993 -17.35410 -17.04918 -16.55704 -16.25630 -15.93099 -15.27655 -15.12609 -14.81405 -14.55144 -14.35498 -14.26634 -13.66729 -13.57847 -13.35445 -12.94254 -12.80193 -12.53208 -12.21170 -11.96099 -11.87367 -11.51948 -11.25847 -11.06880 -10.99765 -10.77727 -10.20208 -9.47874 -9.39251 -8.66413 -6.38599 0.36292 1.00802 1.36734 1.48230 1.50972 2.07879 2.11168 2.19767 2.78211 3.15093 3.42154 3.69115 3.85418 3.96240 4.09006 4.19401 4.37868 4.41572 4.53679 4.58930 4.63551 4.89850 4.98262 5.08471 5.18138 5.30404 5.39660 5.51470 5.85454 5.91975 6.04412 6.27754 6.48132 6.64648 6.73784 6.87581 6.87991 6.93862 7.26578 8.30472 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.032364 B = 0.004062 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.939948 B = 6892.267998 C = 7584.246894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.030 3.970 3 Si 0.984 3.016 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.140 4.140 14 C 0.561 3.439 15 O -0.588 6.588 16 N -0.709 5.709 17 C 0.091 3.909 18 C 0.106 3.894 19 H 0.106 0.894 20 O -0.565 6.565 21 C 0.051 3.949 22 O -0.586 6.586 23 C -0.130 4.130 24 H 0.287 0.713 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.413 0.587 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.389 0.611 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 -9.766 7.924 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.102 0.898 9 C 0.065 3.935 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.143 4.143 14 C 0.351 3.649 15 O -0.470 6.470 16 N -0.363 5.363 17 C -0.033 4.033 18 C 0.046 3.954 19 H 0.124 0.876 20 O -0.372 6.372 21 C -0.027 4.027 22 O -0.395 6.395 23 C -0.150 4.150 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.251 0.749 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.238 0.762 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.250 0.750 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.493 -9.406 7.348 14.649 hybrid contribution -0.135 1.219 0.492 1.322 sum -8.628 -8.187 7.840 14.246 Atomic orbital electron populations 1.69884 1.09237 1.30685 1.35302 1.26863 0.95433 1.04956 0.91284 0.85223 0.78684 0.75403 0.80253 1.17673 1.19604 1.18506 1.19849 0.98462 0.92165 1.42346 0.89762 1.17944 0.91807 0.93908 0.89814 1.21423 1.03886 0.92831 1.05477 1.20921 0.95397 0.97741 0.97354 1.20850 1.00698 0.95146 1.05109 1.19780 0.97087 0.95495 1.01985 1.18700 0.83124 0.83461 0.79604 1.90668 1.67573 1.31929 1.56787 1.45622 1.30831 1.08814 1.50997 1.22006 0.88115 0.97983 0.95172 1.22032 0.87206 0.89246 0.96905 0.87627 1.86606 1.60262 1.54897 1.35485 1.22730 0.94912 0.84804 1.00289 1.86471 1.45501 1.28449 1.79085 1.21436 0.98254 0.96339 0.99007 0.90272 0.87278 0.84441 0.84932 0.74891 0.90823 0.90678 0.76191 0.91113 0.90982 0.75011 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.15 10.97 21.83 0.24 -45.91 16 2 C 0.03 1.55 5.14 85.26 0.44 1.99 16 3 Si 0.98 39.65 29.59 68.60 2.03 41.68 16 4 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.50 -27.33 9.05 23.47 0.21 -27.12 16 8 H 0.08 4.34 7.90 -2.91 -0.02 4.32 16 9 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 10 C -0.22 -10.24 9.78 22.77 0.22 -10.01 16 11 C -0.10 -3.89 10.01 22.18 0.22 -3.67 16 12 C -0.20 -8.00 9.55 22.70 0.22 -7.78 16 13 C -0.14 -6.72 5.87 -20.13 -0.12 -6.84 16 14 C 0.56 24.64 7.77 86.80 0.67 25.31 16 15 O -0.59 -30.14 16.33 -3.88 -0.06 -30.21 16 16 N -0.71 -22.38 5.45 -465.94 -2.54 -24.92 16 17 C 0.09 2.20 5.31 86.38 0.46 2.66 16 18 C 0.11 2.01 3.28 30.59 0.10 2.11 16 19 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 20 O -0.57 -11.68 13.25 -144.34 -1.91 -13.60 16 21 C 0.05 0.71 6.68 71.98 0.48 1.19 16 22 O -0.59 -9.28 13.62 -144.34 -1.97 -11.25 16 23 C -0.13 -7.27 8.23 23.01 0.19 -7.08 16 24 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 25 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 26 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 27 H 0.13 4.19 6.38 -2.91 -0.02 4.17 16 28 H 0.41 11.45 6.49 -92.71 -0.60 10.85 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.39 5.47 9.05 -74.06 -0.67 4.80 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.40 2.41 9.12 -74.06 -0.68 1.73 16 35 H 0.10 6.18 5.77 -2.91 -0.02 6.16 16 Total: -1.00 -73.78 306.61 -2.03 -75.81 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.80 Total: 34.05 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 2.98 Total: -25.66 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -2.30 Total: -70.83 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -3.94 Total: -55.05 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -73.78 -2.03 -75.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.148 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds