Wall clock time and date at job start Mon Mar 30 2020 00:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34023 * 119.56725 * 2 1 4 4 C 1.33778 * 122.06111 * 179.97438 * 3 2 1 5 5 C 1.34843 * 121.02825 * 359.97438 * 4 3 2 6 6 C 1.41734 * 119.01934 * 359.76486 * 5 4 3 7 7 O 1.22165 * 120.92363 * 180.25466 * 6 5 4 8 8 C 1.35108 * 119.57382 * 179.97438 * 2 1 3 9 9 O 1.36087 * 120.55933 * 359.97438 * 8 2 1 10 10 C 1.42904 * 117.00239 * 89.99703 * 9 8 2 11 11 H 1.09004 * 110.88219 * 333.87833 * 10 9 8 12 12 C 1.55157 * 111.00567 * 210.00351 * 10 9 8 13 13 C 1.54321 * 102.93981 * 206.38334 * 12 10 9 14 14 N 1.47020 * 107.27348 * 22.19198 * 13 12 10 15 15 C 1.36929 * 125.64817 * 181.02587 * 14 13 12 16 16 H 1.08001 * 120.00390 * 185.86016 * 15 14 13 17 17 C 1.38815 * 120.00214 * 5.85300 * 15 14 13 18 18 N 1.31620 * 119.99646 * 7.32913 * 17 15 14 19 19 Si 1.86797 * 120.00191 * 187.32803 * 17 15 14 20 20 H 1.48501 * 109.47357 * 265.01605 * 19 17 15 21 21 H 1.48499 * 109.47206 * 25.01555 * 19 17 15 22 22 H 1.48494 * 109.47172 * 145.01502 * 19 17 15 23 23 C 1.47423 * 108.70333 * 1.28517 * 14 13 12 24 24 H 1.09004 * 109.47757 * 270.01827 * 1 2 3 25 25 H 1.08992 * 109.47601 * 30.02403 * 1 2 3 26 26 H 1.09001 * 109.46989 * 150.02683 * 1 2 3 27 27 H 1.07994 * 119.48671 * 179.97438 * 4 3 2 28 28 H 1.08006 * 120.48856 * 180.02562 * 5 4 3 29 29 H 1.08998 * 110.72558 * 88.01455 * 12 10 9 30 30 H 1.09001 * 110.71639 * 324.74776 * 12 10 9 31 31 H 1.08997 * 109.88191 * 262.76841 * 13 12 10 32 32 H 1.09009 * 110.00926 * 141.67978 * 13 12 10 33 33 H 0.97003 * 119.99469 * 179.97438 * 18 17 15 34 34 H 1.08998 * 110.36579 * 94.48111 * 23 14 13 35 35 H 1.09002 * 110.36870 * 216.80998 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1683 1.1657 0.0000 4 6 3.5048 1.2239 0.0005 5 6 4.2495 0.0998 0.0016 6 6 3.5959 -1.1579 0.0072 7 8 4.2364 -2.1982 0.0130 8 6 2.1738 -1.1751 0.0005 9 8 1.4961 -2.3552 0.0016 10 6 1.1724 -2.9187 -1.2712 11 1 1.1011 -2.1423 -2.0330 12 6 -0.1380 -3.7461 -1.1961 13 6 0.0339 -4.7699 -2.3379 14 7 1.4744 -4.8835 -2.6093 15 6 2.0458 -5.6766 -3.5681 16 1 3.1207 -5.7630 -3.6274 17 6 1.2434 -6.3700 -4.4639 18 7 -0.0550 -6.1553 -4.4868 19 14 2.0064 -7.6076 -5.6368 20 1 2.2822 -6.9502 -6.9395 21 1 3.2766 -8.1174 -5.0608 22 1 1.0669 -8.7390 -5.8424 23 6 2.2022 -4.0067 -1.6739 24 1 -0.3635 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 3.9950 2.1862 0.0001 28 1 5.3280 0.1569 0.0024 29 1 -1.0058 -3.1112 -1.3747 30 1 -0.2202 -4.2516 -0.2339 31 1 -0.4851 -4.4204 -3.2304 32 1 -0.3634 -5.7383 -2.0335 33 1 -0.6156 -6.6395 -5.1131 34 1 2.5241 -4.5703 -0.7982 35 1 3.0598 -3.5518 -2.1696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227241184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:53 Heat of formation + Delta-G solvation = -34.269174 kcal Electronic energy + Delta-G solvation = -20325.142688 eV Core-core repulsion = 17098.431369 eV Total energy + Delta-G solvation = -3226.711319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07404 -39.15560 -37.92678 -36.22807 -33.05367 -32.60603 -31.91069 -29.29755 -28.08168 -27.05818 -24.65822 -23.99595 -22.71610 -20.52638 -20.09457 -18.54158 -18.44792 -16.98363 -16.95134 -16.55767 -15.65365 -14.73335 -14.50265 -14.35469 -14.18935 -13.78126 -13.60373 -13.44624 -13.23090 -12.90509 -12.54244 -12.24322 -12.13807 -11.77989 -11.33951 -10.84955 -10.76002 -10.31539 -10.10117 -9.93414 -9.80847 -9.74921 -9.65970 -9.02568 -8.58344 -8.48860 -6.77666 -5.66034 -3.01601 0.83502 0.91175 2.12622 3.26985 3.43860 3.49278 3.52548 3.80662 4.25579 4.35412 4.55624 4.69856 4.98871 5.08322 5.24601 5.33711 5.41914 5.44240 5.57669 5.59366 5.72976 5.76756 5.87536 6.00771 6.24385 6.47550 6.51940 6.76239 6.88970 6.95922 7.49166 7.58253 7.67314 7.83587 7.97878 8.30597 9.25537 9.86058 10.51881 11.43802 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.030468 B = 0.005026 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.779352 B = 5569.685710 C = 6101.911412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.092 3.908 3 O -0.210 6.210 4 C 0.103 3.897 5 C -0.304 4.304 6 C 0.378 3.622 7 O -0.463 6.463 8 C -0.069 4.069 9 O -0.296 6.296 10 C 0.071 3.929 11 H 0.067 0.933 12 C -0.137 4.137 13 C 0.172 3.828 14 N -0.604 5.604 15 C -0.224 4.224 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.128 3.872 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.203 0.797 28 H 0.158 0.842 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.252 0.748 34 H 0.034 0.966 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 18.352 9.676 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.044 3.956 3 O -0.113 6.113 4 C 0.038 3.962 5 C -0.325 4.325 6 C 0.264 3.736 7 O -0.347 6.347 8 C -0.116 4.116 9 O -0.212 6.212 10 C 0.015 3.985 11 H 0.086 0.914 12 C -0.175 4.175 13 C 0.047 3.953 14 N -0.331 5.331 15 C -0.352 4.352 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.743 3.257 20 H -0.217 1.217 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.001 3.999 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.220 0.780 28 H 0.176 0.824 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.987 17.762 9.657 20.242 hybrid contribution 0.712 -0.631 -0.804 1.246 sum 1.699 17.131 8.853 19.358 Atomic orbital electron populations 1.20872 0.85034 1.05185 1.04788 1.22825 0.95009 0.82537 0.95223 1.82905 1.20454 1.32234 1.75717 1.24037 0.79080 1.00740 0.92332 1.23133 1.03196 0.93518 1.12603 1.18024 0.88772 0.89953 0.76857 1.90853 1.68601 1.35110 1.40111 1.20208 0.92851 0.87005 1.11521 1.86187 1.72647 1.32388 1.29985 1.23926 0.97303 0.94972 0.82269 0.91447 1.23041 0.94432 0.98465 1.01580 1.21256 0.85796 0.94702 0.93508 1.44380 1.01750 1.49274 1.37727 1.19095 0.91540 1.18684 1.05903 0.90418 1.24800 0.95714 1.00872 0.99166 1.69939 1.03238 1.44490 1.39426 0.86086 0.78063 0.80872 0.80718 1.21679 1.20586 1.21611 1.21881 0.93535 0.90755 0.93684 0.88668 0.89710 0.87963 0.78039 0.82423 0.91647 0.91204 0.91609 0.94795 0.93808 0.94819 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.96 36.00 0.36 -0.56 16 2 C 0.09 1.08 6.97 -35.42 -0.25 0.83 16 3 O -0.21 -1.97 9.74 7.84 0.08 -1.89 16 4 C 0.10 0.79 11.36 29.53 0.34 1.13 16 5 C -0.30 -3.43 10.03 -39.45 -0.40 -3.83 16 6 C 0.38 6.30 6.81 -36.72 -0.25 6.05 16 7 O -0.46 -9.77 17.66 -10.25 -0.18 -9.95 16 8 C -0.07 -1.09 5.59 -39.16 -0.22 -1.31 16 9 O -0.30 -5.43 8.89 -35.03 -0.31 -5.75 16 10 C 0.07 1.41 2.82 -24.46 -0.07 1.34 16 11 H 0.07 1.29 7.93 -51.93 -0.41 0.87 16 12 C -0.14 -2.66 6.68 -24.90 -0.17 -2.83 16 13 C 0.17 4.31 5.45 -3.07 -0.02 4.30 16 14 N -0.60 -16.55 3.39 -169.94 -0.58 -17.13 16 15 C -0.22 -6.61 10.26 -15.06 -0.15 -6.76 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C -0.01 -0.28 5.45 -17.43 -0.09 -0.38 16 18 N -0.92 -27.62 10.45 55.49 0.58 -27.04 16 19 Si 0.91 22.81 29.56 -169.99 -5.02 17.79 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.13 3.09 6.89 -2.41 -0.02 3.07 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.10 1.06 6.77 -51.93 -0.35 0.71 16 27 H 0.20 0.49 8.06 -52.49 -0.42 0.07 16 28 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.78 6.88 -51.93 -0.36 1.43 16 32 H 0.03 0.92 7.97 -51.92 -0.41 0.50 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -35.81 299.95 -6.32 -42.13 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.46 Total: -3.73 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.94 Total: 1.05 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.00 Total: -44.17 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.42 Total: -17.59 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.81 -6.32 -42.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227241184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.860 kcal (2) G-P(sol) polarization free energy of solvation -35.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds