Wall clock time and date at job start Mon Mar 30 2020 00:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34512 * 119.49388 * 2 1 4 4 C 1.42141 * 119.12755 * 180.02562 * 3 2 1 5 5 O 1.22211 * 120.87197 * 179.97438 * 4 3 2 6 6 C 1.41137 * 118.24803 * 359.75368 * 4 3 2 7 7 C 1.35969 * 118.91574 * 0.50686 * 6 4 3 8 8 O 1.35089 * 119.61952 * 179.76199 * 7 6 4 9 9 C 1.42905 * 117.00274 * 179.72154 * 8 7 6 10 10 H 1.09006 * 110.88029 * 32.42965 * 9 8 7 11 11 C 1.55159 * 111.03777 * 156.32816 * 9 8 7 12 12 C 1.54336 * 103.02051 * 153.39931 * 11 9 8 13 13 N 1.47029 * 107.26326 * 338.14598 * 12 11 9 14 14 C 1.36929 * 125.64636 * 178.85131 * 13 12 11 15 15 H 1.08003 * 119.99993 * 186.34007 * 14 13 12 16 16 C 1.38818 * 120.00101 * 6.33485 * 14 13 12 17 17 N 1.31614 * 119.99753 * 7.38047 * 16 14 13 18 18 Si 1.86799 * 119.99896 * 187.38511 * 16 14 13 19 19 H 1.48499 * 109.47061 * 265.01784 * 18 16 14 20 20 H 1.48503 * 109.47574 * 25.01602 * 18 16 14 21 21 H 1.48506 * 109.47217 * 145.01935 * 18 16 14 22 22 C 1.47421 * 108.70357 * 358.58311 * 13 12 11 23 23 O 1.34025 * 119.49639 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46653 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46786 * 299.97847 * 1 2 3 26 26 H 1.09002 * 109.46927 * 59.98357 * 1 2 3 27 27 H 1.07996 * 120.43344 * 359.97353 * 3 2 1 28 28 H 1.08006 * 120.53824 * 180.27206 * 6 4 3 29 29 H 1.08994 * 110.72493 * 271.96118 * 11 9 8 30 30 H 1.09004 * 110.71629 * 35.05803 * 11 9 8 31 31 H 1.08991 * 109.99068 * 218.66798 * 12 11 9 32 32 H 1.09000 * 109.77594 * 97.49873 * 12 11 9 33 33 H 0.97002 * 119.99929 * 180.02562 * 17 16 14 34 34 H 1.08998 * 110.36610 * 143.19785 * 22 13 12 35 35 H 1.09004 * 110.36443 * 265.40947 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1692 1.1708 0.0000 4 6 3.5906 1.1617 -0.0006 5 8 4.2244 2.2066 -0.0010 6 6 4.2506 -0.0858 0.0043 7 6 3.5061 -1.2235 -0.0013 8 8 4.1232 -2.4253 -0.0017 9 6 3.2869 -3.5840 -0.0015 10 1 2.3622 -3.3959 -0.5473 11 6 4.0362 -4.8118 -0.5834 12 6 3.3308 -6.0041 0.0969 13 7 2.6902 -5.4934 1.3178 14 6 1.9422 -6.2319 2.1953 15 1 1.4278 -5.7440 3.0100 16 6 1.8449 -7.6077 2.0376 17 7 2.5838 -8.2207 1.1374 18 14 0.6651 -8.5887 3.1030 19 1 1.3934 -9.1309 4.2781 20 1 -0.4347 -7.7052 3.5668 21 1 0.0987 -9.7101 2.3111 22 6 2.9921 -4.0560 1.4442 23 8 2.1669 -1.1665 -0.0005 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5135 0.8901 26 1 -0.3633 0.5141 -0.8899 27 1 1.6281 2.1054 -0.0004 28 1 5.3295 -0.1359 0.0084 29 1 3.9187 -4.8578 -1.6660 30 1 5.0916 -4.7835 -0.3122 31 1 4.0608 -6.7714 0.3544 32 1 2.5763 -6.4171 -0.5726 33 1 2.5156 -9.1820 1.0270 34 1 2.1327 -3.5221 1.8497 35 1 3.8652 -3.9061 2.0793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230894810.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:57 Heat of formation + Delta-G solvation = -65.505928 kcal Electronic energy + Delta-G solvation = -19940.891779 eV Core-core repulsion = 16712.825933 eV Total energy + Delta-G solvation = -3228.065846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.32272 -40.64251 -39.49062 -38.27815 -34.64658 -34.44186 -33.23960 -31.23220 -29.45942 -28.63841 -26.60184 -25.47571 -23.89176 -22.29922 -22.01388 -20.18624 -19.12194 -18.83183 -18.37002 -18.12436 -16.91932 -16.54129 -16.16060 -16.05960 -15.52449 -15.17116 -15.09578 -14.88179 -14.25548 -14.17161 -14.05256 -13.81984 -13.60742 -13.38822 -13.05704 -12.90890 -12.73501 -12.26177 -12.06610 -12.02556 -11.81728 -11.60950 -10.82792 -10.76477 -10.25030 -9.75025 -8.98528 -7.88833 -5.28530 -0.12235 0.06672 0.68028 1.48298 1.48840 1.58236 1.67733 2.41712 2.48411 3.29411 3.35340 3.44291 3.49034 3.62169 3.79415 3.88132 3.93874 4.17794 4.31504 4.48135 4.57265 4.61156 4.68235 4.70876 4.74585 4.87432 4.96041 5.16826 5.20282 5.38053 5.54490 5.61853 5.70221 6.04818 6.14684 6.73868 7.03197 7.68154 8.30735 9.20072 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.004515 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.993765 B = 6200.031177 C = 6755.416958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.161 3.839 3 C -0.319 4.319 4 C 0.404 3.596 5 O -0.558 6.558 6 C -0.370 4.370 7 C 0.351 3.649 8 O -0.259 6.259 9 C 0.073 3.927 10 H 0.110 0.890 11 C -0.122 4.122 12 C 0.179 3.821 13 N -0.620 5.620 14 C -0.249 4.249 15 H 0.084 0.916 16 C -0.058 4.058 17 N -0.947 5.947 18 Si 0.979 3.021 19 H -0.289 1.289 20 H -0.266 1.266 21 H -0.292 1.292 22 C 0.118 3.882 23 O -0.245 6.245 24 H 0.091 0.909 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.181 0.819 28 H 0.156 0.844 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.015 0.985 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 13.379 -4.609 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 C -0.339 4.339 4 C 0.300 3.700 5 O -0.451 6.451 6 C -0.391 4.391 7 C 0.256 3.744 8 O -0.170 6.170 9 C 0.017 3.983 10 H 0.128 0.872 11 C -0.160 4.160 12 C 0.054 3.946 13 N -0.347 5.347 14 C -0.377 4.377 15 H 0.102 0.898 16 C -0.252 4.252 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.216 1.216 20 H -0.191 1.191 21 H -0.219 1.219 22 C -0.008 4.008 23 O -0.151 6.151 24 H 0.110 0.890 25 H 0.142 0.858 26 H 0.145 0.855 27 H 0.199 0.801 28 H 0.173 0.827 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.296 13.382 -4.582 15.104 hybrid contribution -0.013 -0.971 0.595 1.139 sum -5.309 12.411 -3.986 14.075 Atomic orbital electron populations 1.21290 0.81176 1.06576 1.07228 1.23096 0.95762 0.80086 0.89557 1.22928 0.95880 1.00216 1.14841 1.17373 0.90022 0.88133 0.74495 1.90766 1.70893 1.35542 1.47866 1.21998 1.02875 0.90089 1.24161 1.20664 0.78834 0.87177 0.87721 1.86482 1.33220 1.11520 1.85822 1.23832 0.94251 0.81845 0.98359 0.87216 1.22923 1.00277 0.91399 1.01387 1.21048 0.94528 0.92753 0.86305 1.44582 1.60327 1.04407 1.25419 1.19424 1.21755 0.89481 1.07074 0.89774 1.25647 1.01518 0.97294 1.00723 1.70127 1.42743 1.08495 1.38146 0.85069 0.78607 0.78136 0.77526 1.21559 1.19060 1.21883 1.21988 0.98670 0.85910 0.94242 1.82744 1.19379 1.36771 1.76251 0.89002 0.85819 0.85457 0.80144 0.82678 0.87946 0.89964 0.94814 0.96693 0.94103 0.92594 0.95646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.14 71.24 0.72 -0.13 16 2 C 0.16 2.84 6.95 24.83 0.17 3.01 16 3 C -0.32 -6.77 9.66 22.39 0.22 -6.55 16 4 C 0.40 12.22 6.79 23.95 0.16 12.39 16 5 O -0.56 -21.10 17.91 -6.01 -0.11 -21.21 16 6 C -0.37 -10.70 9.94 22.45 0.22 -10.48 16 7 C 0.35 9.46 7.60 67.29 0.51 9.97 16 8 O -0.26 -7.55 9.88 -60.82 -0.60 -8.15 16 9 C 0.07 2.28 3.25 31.98 0.10 2.38 16 10 H 0.11 3.12 7.22 -2.38 -0.02 3.10 16 11 C -0.12 -4.03 6.69 31.79 0.21 -3.82 16 12 C 0.18 8.14 5.43 86.73 0.47 8.61 16 13 N -0.62 -30.00 3.39 -691.98 -2.35 -32.35 16 14 C -0.25 -13.24 10.26 84.04 0.86 -12.38 16 15 H 0.08 4.27 7.84 -2.91 -0.02 4.24 16 16 C -0.06 -3.14 5.45 84.86 0.46 -2.68 16 17 N -0.95 -54.26 10.48 21.65 0.23 -54.03 16 18 Si 0.98 43.46 29.56 68.60 2.03 45.49 16 19 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 C 0.12 4.53 6.97 86.85 0.61 5.13 16 23 O -0.25 -5.64 8.23 25.47 0.21 -5.43 16 24 H 0.09 0.79 8.13 -2.38 -0.02 0.77 16 25 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 28 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16 29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.03 1.77 6.99 -2.39 -0.02 1.75 16 32 H 0.01 0.74 7.91 -2.39 -0.02 0.72 16 33 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.81 301.25 5.22 -64.59 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.09 Total: 5.64 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 4.72 Total: 5.46 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -2.12 Total: -86.38 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.50 Total: -34.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.81 5.22 -64.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230894810.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.915 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds