Wall clock time and date at job start Mon Mar 30 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47053 * 300.00761 * 3 2 1 6 6 H 1.48503 * 109.47127 * 60.00374 * 3 2 1 7 7 C 1.37873 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.53512 * 114.17138 * 180.02562 * 9 7 2 11 11 N 1.47485 * 87.93177 * 220.14094 * 10 9 7 12 12 C 1.46903 * 111.00110 * 138.70291 * 11 10 9 13 13 C 1.50702 * 109.46871 * 169.99981 * 12 11 10 14 14 C 1.38238 * 119.90667 * 270.23018 * 13 12 11 15 15 C 1.38667 * 120.08262 * 180.27905 * 14 13 12 16 16 O 1.35995 * 120.04290 * 179.76791 * 15 14 13 17 17 C 1.38977 * 119.91098 * 359.49183 * 15 14 13 18 18 O 1.36095 * 120.08765 * 180.23501 * 17 15 14 19 19 C 1.38976 * 119.82346 * 0.25304 * 17 15 14 20 20 O 1.36005 * 120.04205 * 180.02562 * 19 17 15 21 21 C 1.38230 * 119.91199 * 89.99674 * 13 12 11 22 22 C 1.47482 * 87.83591 * 27.00828 * 11 10 9 23 23 H 0.96994 * 120.00068 * 359.97438 * 1 2 3 24 24 H 1.08996 * 113.25551 * 312.95345 * 9 7 2 25 25 H 1.08995 * 113.48213 * 105.37391 * 10 9 7 26 26 H 1.09005 * 113.47696 * 334.90030 * 10 9 7 27 27 H 1.08995 * 109.47234 * 50.00175 * 12 11 10 28 28 H 1.09002 * 109.47160 * 289.99630 * 12 11 10 29 29 H 1.07994 * 119.95762 * 0.04835 * 14 13 12 30 30 H 0.96700 * 114.00111 * 269.72415 * 16 15 14 31 31 H 0.96705 * 114.00309 * 89.99348 * 18 17 15 32 32 H 0.96694 * 114.00192 * 89.99918 * 20 19 17 33 33 H 1.07999 * 119.95126 * 359.96341 * 21 13 12 34 34 H 1.08996 * 113.47671 * 87.76230 * 22 11 10 35 35 H 1.08997 * 113.47752 * 218.22672 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1497 -3.7438 -0.0005 11 7 1.2050 -4.3602 -0.9507 12 6 1.9206 -5.0901 -2.0058 13 6 0.9383 -5.9037 -2.8084 14 6 0.6419 -7.1989 -2.4269 15 6 -0.2570 -7.9528 -3.1661 16 8 -0.5444 -9.2286 -2.7927 17 6 -0.8682 -7.4010 -4.2857 18 8 -1.7546 -8.1361 -5.0110 19 6 -0.5714 -6.0968 -4.6628 20 8 -1.1673 -5.5522 -5.7574 21 6 0.3325 -5.3512 -3.9213 22 6 0.8518 -2.9993 -1.3959 23 1 -0.4850 0.8400 0.0004 24 1 0.4452 -2.5308 0.7327 25 1 2.1890 -4.2510 0.9634 26 1 3.1380 -3.5658 -0.4246 27 1 2.6574 -5.7535 -1.5530 28 1 2.4250 -4.3799 -2.6609 29 1 1.1139 -7.6254 -1.5542 30 1 0.0324 -9.8945 -3.1913 31 1 -2.6711 -8.0522 -4.7141 32 1 -1.9995 -5.0980 -5.5671 33 1 0.5635 -4.3375 -4.2135 34 1 1.4935 -2.6226 -2.1923 35 1 -0.2089 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233011039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:33 Heat of formation + Delta-G solvation = -94.014715 kcal Electronic energy + Delta-G solvation = -19590.311126 eV Core-core repulsion = 16361.009046 eV Total energy + Delta-G solvation = -3229.302080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.56966 -40.57589 -38.79605 -37.83634 -36.98566 -34.72671 -32.38933 -30.44113 -29.55828 -27.18255 -26.52096 -24.46292 -23.80560 -22.35353 -20.47628 -19.89763 -19.10112 -18.56905 -18.46857 -17.69005 -16.73439 -16.69374 -16.33042 -15.98091 -15.82444 -15.39866 -15.21301 -14.67113 -14.04987 -13.92655 -13.50481 -13.34177 -13.08780 -12.89651 -12.82476 -12.70126 -12.31598 -12.11872 -11.93781 -11.52803 -11.16440 -11.11767 -10.86667 -10.50493 -9.74314 -9.68031 -9.48209 -8.14981 -6.26136 0.01175 0.07932 1.42093 1.44566 1.55588 2.29332 2.43374 2.83176 3.14783 3.15871 3.38642 3.42545 3.78152 4.03796 4.13710 4.25626 4.30404 4.44500 4.57667 4.68948 4.76887 4.79926 4.87729 4.97323 5.04337 5.14787 5.24526 5.34829 5.54052 5.59217 5.63815 5.85793 6.29442 6.36716 6.49284 6.70564 6.84071 6.89657 7.42820 8.95008 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.004177 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.123500 B = 6701.443841 C = 7233.689337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.018 3.982 10 C 0.010 3.990 11 N -0.477 5.477 12 C 0.056 3.944 13 C -0.045 4.045 14 C -0.124 4.124 15 C 0.097 3.903 16 O -0.496 6.496 17 C 0.042 3.958 18 O -0.491 6.491 19 C 0.092 3.908 20 O -0.498 6.498 21 C -0.140 4.140 22 C 0.020 3.980 23 H 0.262 0.738 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.147 0.853 30 H 0.411 0.589 31 H 0.404 0.596 32 H 0.408 0.592 33 H 0.128 0.872 34 H 0.054 0.946 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -14.683 -8.006 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.001 4.001 10 C -0.118 4.118 11 N -0.199 5.199 12 C -0.072 4.072 13 C -0.046 4.046 14 C -0.143 4.143 15 C 0.052 3.948 16 O -0.309 6.309 17 C -0.004 4.004 18 O -0.303 6.303 19 C 0.046 3.954 20 O -0.311 6.311 21 C -0.159 4.159 22 C -0.109 4.109 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.165 0.835 30 H 0.270 0.730 31 H 0.262 0.738 32 H 0.267 0.733 33 H 0.146 0.854 34 H 0.072 0.928 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.267 -15.216 -8.081 17.231 hybrid contribution 0.156 1.678 -0.179 1.694 sum -0.110 -13.538 -8.260 15.859 Atomic orbital electron populations 1.70101 1.07553 1.27489 1.51016 1.25812 0.95556 1.02664 0.94358 0.85533 0.79249 0.79490 0.77554 1.18701 1.20736 1.20691 1.21413 0.93079 0.91360 1.50791 0.92074 1.20060 0.94625 0.92229 0.93197 1.23862 0.95531 0.95465 0.96963 1.68854 1.27683 1.12772 1.10633 1.21686 0.94357 0.97493 0.93685 1.19529 0.97283 0.93807 0.93942 1.21363 0.98099 0.94169 1.00716 1.18589 0.96972 0.87149 0.92131 1.84744 1.60937 1.13425 1.71773 1.19128 0.97939 0.91133 0.92171 1.84805 1.21058 1.67721 1.56692 1.18592 0.97192 0.90807 0.88774 1.84819 1.42422 1.74503 1.29309 1.21377 0.98734 1.00465 0.95372 1.23831 0.98941 0.88284 0.99879 0.92895 0.95308 0.90527 0.91495 0.88351 0.92775 0.83521 0.73005 0.73800 0.73346 0.85400 0.92825 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.26 21.45 0.28 -53.11 16 2 C 0.02 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.53 -28.18 8.83 25.60 0.23 -27.95 16 8 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.02 0.89 3.76 -11.20 -0.04 0.85 16 10 C 0.01 0.40 7.25 83.58 0.61 1.01 16 11 N -0.48 -18.08 6.32 -932.42 -5.89 -23.97 16 12 C 0.06 1.68 4.94 85.56 0.42 2.11 16 13 C -0.04 -1.28 5.46 -19.87 -0.11 -1.39 16 14 C -0.12 -3.19 9.63 22.37 0.22 -2.97 16 15 C 0.10 2.38 6.71 22.55 0.15 2.53 16 16 O -0.50 -10.25 13.29 -79.55 -1.06 -11.31 16 17 C 0.04 1.07 6.73 22.62 0.15 1.23 16 18 O -0.49 -10.87 13.07 -70.48 -0.92 -11.79 16 19 C 0.09 2.46 6.71 22.55 0.15 2.61 16 20 O -0.50 -12.04 13.29 -79.66 -1.06 -13.09 16 21 C -0.14 -4.04 9.63 22.37 0.22 -3.83 16 22 C 0.02 0.89 7.28 83.58 0.61 1.50 16 23 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.03 1.61 8.11 -2.39 -0.02 1.59 16 25 H 0.08 2.81 8.14 -2.39 -0.02 2.80 16 26 H 0.07 2.48 7.87 -2.38 -0.02 2.46 16 27 H 0.10 2.53 8.02 -2.39 -0.02 2.51 16 28 H 0.05 1.65 7.24 -2.39 -0.02 1.63 16 29 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 30 H 0.41 4.67 9.06 -74.06 -0.67 4.00 16 31 H 0.40 5.47 9.07 -74.05 -0.67 4.80 16 32 H 0.41 6.05 9.06 -74.06 -0.67 5.38 16 33 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.05 2.37 7.38 -2.39 -0.02 2.35 16 35 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -67.72 306.82 -4.42 -72.14 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.86 Total: 19.70 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.06 Total: -23.01 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -5.60 Total: -77.08 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -3.04 Total: -36.20 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -67.72 -4.42 -72.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233011039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.872 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds