Wall clock time and date at job start Mon Mar 30 2020 00:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27339 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27541 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27499 * 3 2 1 7 7 C 1.40125 * 119.99667 * 180.27433 * 2 1 3 8 8 H 1.07999 * 119.99948 * 179.72764 * 7 2 1 9 9 C 1.40884 * 119.99762 * 359.72538 * 7 2 1 10 10 C 1.40943 * 119.65400 * 179.72983 * 9 7 2 11 11 C 1.36570 * 119.27960 * 179.72536 * 10 9 7 12 12 C 1.40521 * 118.58686 * 0.53573 * 11 10 9 13 13 C 1.47249 * 120.36744 * 179.70408 * 12 11 10 14 14 C 1.31699 * 118.11356 * 295.01732 * 13 12 11 15 15 C 1.50093 * 123.77299 * 180.41995 * 14 13 12 16 16 C 1.53008 * 110.13550 * 342.80977 * 15 14 13 17 17 F 1.39901 * 109.63558 * 169.47499 * 16 15 14 18 18 F 1.39904 * 109.63191 * 290.06436 * 16 15 14 19 19 C 1.53363 * 108.51175 * 49.76955 * 16 15 14 20 20 C 1.50095 * 118.11609 * 114.76077 * 13 12 11 21 21 C 1.40347 * 119.26364 * 359.72630 * 12 11 10 22 22 N 1.31132 * 120.65327 * 359.97438 * 21 12 11 23 23 H 0.97000 * 119.99946 * 359.72775 * 1 2 3 24 24 H 1.07997 * 120.35782 * 359.97438 * 10 9 7 25 25 H 1.08003 * 120.70871 * 180.23893 * 11 10 9 26 26 H 1.07999 * 118.11626 * 0.40383 * 14 13 12 27 27 H 1.08997 * 109.36338 * 103.01599 * 15 14 13 28 28 H 1.09004 * 109.36467 * 222.60782 * 15 14 13 29 29 H 1.08997 * 109.63415 * 51.63485 * 19 16 15 30 30 H 1.09004 * 109.63219 * 172.22017 * 19 16 15 31 31 H 1.09005 * 109.35699 * 283.05122 * 20 13 12 32 32 H 1.09000 * 109.36220 * 42.64213 * 20 13 12 33 33 H 1.08002 * 119.67422 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4828 2.0497 -1.4001 5 1 1.4415 2.6509 0.7058 6 1 3.5416 1.4383 0.6942 7 6 2.0076 -1.2135 -0.0058 8 1 3.0876 -1.2136 -0.0103 9 6 1.3031 -2.4336 -0.0058 10 6 2.0150 -3.6499 -0.0174 11 6 1.3244 -4.8281 -0.0116 12 6 -0.0801 -4.7842 -0.0057 13 6 -0.8639 -6.0308 -0.0059 14 6 -0.7827 -6.8147 -1.0610 15 6 -1.5323 -8.1077 -1.1995 16 6 -2.0310 -8.5766 0.1689 17 9 -2.9233 -9.6415 0.0045 18 9 -0.9448 -8.9851 0.9504 19 6 -2.7469 -7.4058 0.8536 20 6 -1.7048 -6.3378 1.1989 21 6 -0.7276 -3.5390 -0.0001 22 7 -0.0351 -2.4254 0.0002 23 1 -0.4850 0.8400 0.0040 24 1 3.0949 -3.6502 -0.0268 25 1 1.8465 -5.7735 -0.0164 26 1 -0.1400 -6.5096 -1.8736 27 1 -2.3839 -7.9623 -1.8641 28 1 -0.8718 -8.8649 -1.6222 29 1 -3.4941 -6.9883 0.1788 30 1 -3.2286 -7.7548 1.7671 31 1 -1.0647 -6.6996 2.0036 32 1 -2.2139 -5.4308 1.5249 33 1 -1.8068 -3.4975 0.0041 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242234627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:38 Heat of formation + Delta-G solvation = -70.545193 kcal Electronic energy + Delta-G solvation = -19307.639816 eV Core-core repulsion = 15968.267936 eV Total energy + Delta-G solvation = -3339.371880 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.85404 -46.87276 -38.60808 -37.04402 -33.76780 -31.53962 -30.94805 -30.48342 -28.52336 -25.38950 -23.52935 -22.33496 -21.70147 -20.80890 -18.13142 -17.54830 -17.36345 -16.33812 -15.86833 -15.59087 -15.00062 -14.42230 -14.07034 -13.96626 -13.65228 -13.20281 -13.02891 -12.90717 -12.62504 -12.50355 -12.19626 -12.13719 -11.98422 -11.56106 -11.39791 -11.24297 -11.08250 -10.71613 -10.38224 -10.16806 -9.95335 -9.45248 -8.59986 -8.29420 -7.62214 -7.46253 -6.50539 -4.60820 2.34694 2.79917 3.02629 3.04052 3.05860 3.16080 3.82808 3.85756 4.15184 4.47590 4.51000 4.63372 5.18849 5.24848 5.45015 5.47269 5.61109 5.70853 5.80093 5.86898 5.97618 6.04873 6.11832 6.18811 6.39019 6.72021 6.76030 6.96535 7.00654 7.28161 7.38621 7.54098 7.73307 7.96521 8.12489 8.54458 8.83360 10.02392 10.19474 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.054285 B = 0.004018 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.669998 B = 6967.697132 C = 7180.899057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.085 0.915 9 C 0.254 3.746 10 C -0.275 4.275 11 C -0.036 4.036 12 C -0.284 4.284 13 C -0.012 4.012 14 C -0.198 4.198 15 C -0.113 4.113 16 C 0.284 3.716 17 F -0.208 7.208 18 F -0.197 7.197 19 C -0.154 4.154 20 C -0.082 4.082 21 C 0.150 3.850 22 N -0.488 5.488 23 H 0.275 0.725 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -9.375 -0.122 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.160 4.160 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.451 4.451 8 H 0.103 0.897 9 C 0.130 3.870 10 C -0.297 4.297 11 C -0.060 4.060 12 C -0.290 4.290 13 C -0.013 4.013 14 C -0.216 4.216 15 C -0.150 4.150 16 C 0.248 3.752 17 F -0.189 7.189 18 F -0.178 7.178 19 C -0.192 4.192 20 C -0.119 4.119 21 C -0.018 4.018 22 N -0.200 5.200 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.829 -8.402 -0.102 9.692 hybrid contribution 0.888 -0.357 0.017 0.958 sum -3.941 -8.759 -0.085 9.605 Atomic orbital electron populations 1.70118 1.07308 1.28059 1.27253 1.26145 0.94948 1.01288 0.93604 0.86297 0.80503 0.80560 0.79356 1.19275 1.19978 1.18427 1.19677 0.94492 0.89608 1.41345 0.89684 1.18622 0.88472 0.91891 0.87971 1.21388 0.98769 0.93637 1.15947 1.20624 0.92808 0.96565 0.95975 1.19111 0.93130 0.92646 1.24073 1.19535 0.95021 0.93621 0.93077 1.22061 1.04161 0.95287 1.00094 1.21259 1.01699 0.98088 0.93981 1.21164 0.78190 0.83275 0.92532 1.92978 1.69141 1.60406 1.96331 1.92994 1.56188 1.91714 1.76906 1.22639 0.99542 0.94878 1.02189 1.20485 0.95901 0.98059 0.97488 1.22683 0.98366 0.87722 0.93015 1.68767 1.07086 1.26253 1.17850 0.91392 0.88362 0.88769 0.86792 0.88631 0.89571 0.88671 0.89687 0.89998 0.89463 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.30 11.44 55.56 0.64 -17.67 16 2 C 0.07 1.65 5.50 -17.32 -0.10 1.55 16 3 Si 0.91 17.99 29.56 -169.99 -5.02 12.96 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.42 -10.99 9.11 -37.87 -0.35 -11.33 16 8 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 9 C 0.25 6.79 6.55 -84.97 -0.56 6.24 16 10 C -0.27 -6.62 9.76 -39.16 -0.38 -7.00 16 11 C -0.04 -0.79 9.75 -39.32 -0.38 -1.18 16 12 C -0.28 -6.03 5.13 -104.58 -0.54 -6.56 16 13 C -0.01 -0.20 5.25 -103.13 -0.54 -0.74 16 14 C -0.20 -3.10 9.34 -36.48 -0.34 -3.44 16 15 C -0.11 -1.44 5.61 -28.17 -0.16 -1.60 16 16 C 0.28 3.82 2.14 -26.54 -0.06 3.76 16 17 F -0.21 -2.81 17.08 2.25 0.04 -2.77 16 18 F -0.20 -3.03 16.30 2.25 0.04 -3.00 16 19 C -0.15 -1.89 5.61 -26.46 -0.15 -2.04 16 20 C -0.08 -1.21 5.42 -28.10 -0.15 -1.36 16 21 C 0.15 3.50 10.80 -17.06 -0.18 3.31 16 22 N -0.49 -13.09 7.83 -10.79 -0.08 -13.17 16 23 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 24 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 25 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 26 H 0.11 1.88 7.95 -52.49 -0.42 1.46 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 32 H 0.09 1.26 8.00 -51.93 -0.42 0.84 16 33 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -27.99 290.21 -7.65 -35.65 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.75 Total: 4.03 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -3.88 Total: -20.40 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.55 Total: -30.84 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.08 Total: -5.77 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.96 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.99 -7.65 -35.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242234627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.898 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds