Wall clock time and date at job start Mon Mar 30 2020 00:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30003 * 127.33949 * 2 1 4 4 O 1.20652 * 112.31896 * 180.32756 * 3 2 1 5 5 C 1.33467 * 113.17642 * 359.68762 * 4 3 2 6 6 C 1.50701 * 126.83330 * 180.02562 * 5 4 3 7 7 C 1.37433 * 106.33029 * 0.02562 * 5 4 3 8 8 C 1.47250 * 128.57710 * 180.02562 * 7 5 4 9 9 O 1.21533 * 120.00318 * 89.99073 * 8 7 5 10 10 O 1.34765 * 119.99871 * 269.99563 * 8 7 5 11 11 C 1.45204 * 117.00092 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46844 * 330.00298 * 11 10 8 13 13 C 1.50702 * 109.47064 * 210.00085 * 11 10 8 14 14 H 1.08003 * 119.99700 * 0.02562 * 13 11 10 15 15 C 1.37873 * 119.99831 * 179.97438 * 13 11 10 16 16 N 1.31514 * 120.00337 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99905 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47052 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47073 * 120.00271 * 17 15 13 20 20 H 1.48502 * 109.46904 * 240.00050 * 17 15 13 21 21 C 1.52996 * 109.46855 * 90.00133 * 11 10 8 22 22 C 1.53002 * 117.49888 * 231.25352 * 21 11 10 23 23 C 1.53000 * 117.50107 * 299.91114 * 21 11 10 24 24 H 1.09000 * 109.47163 * 270.16071 * 1 2 3 25 25 H 1.09003 * 109.46975 * 30.15777 * 1 2 3 26 26 H 1.08996 * 109.47103 * 150.15983 * 1 2 3 27 27 H 1.09008 * 109.47119 * 269.99847 * 6 5 4 28 28 H 1.08999 * 109.47745 * 30.00093 * 6 5 4 29 29 H 1.09002 * 109.47416 * 150.00468 * 6 5 4 30 30 H 0.96991 * 120.00328 * 179.97438 * 16 15 13 31 31 H 1.09002 * 115.54951 * 85.58326 * 21 11 10 32 32 H 1.09000 * 117.49996 * 215.00804 * 22 21 11 33 33 H 1.08999 * 117.49664 * 0.02562 * 22 21 11 34 34 H 1.09008 * 117.49673 * 359.97438 * 23 21 11 35 35 H 1.08999 * 117.49942 * 144.97366 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7209 -0.0064 5 6 3.6502 -0.6003 -0.0051 6 6 4.9723 -1.3234 -0.0112 7 6 2.3995 -1.1699 0.0028 8 6 2.0410 -2.5981 0.0077 9 8 1.8988 -3.1853 1.0622 10 8 1.8707 -3.2541 -1.1571 11 6 1.5187 -4.6605 -1.0763 12 1 1.9453 -5.0902 -0.1700 13 6 2.0634 -5.3847 -2.2804 14 1 2.6191 -4.8422 -3.0310 15 6 1.8535 -6.7398 -2.4231 16 7 1.1773 -7.4004 -1.5087 17 14 2.5294 -7.6377 -3.9153 18 1 3.2466 -6.6749 -4.7893 19 1 3.4686 -8.6986 -3.4711 20 1 1.4095 -8.2530 -4.6719 21 6 -0.0042 -4.8038 -1.0408 22 6 -0.6075 -5.6585 0.0756 23 6 -0.7499 -4.1350 0.1157 24 1 -0.3633 0.0029 1.0277 25 1 -0.3633 0.8886 -0.5163 26 1 -0.3633 -0.8914 -0.5113 27 1 5.2854 -1.4996 -1.0403 28 1 5.7210 -0.7162 0.4975 29 1 4.8669 -2.2778 0.5048 30 1 1.0293 -8.3537 -1.6093 31 1 -0.4972 -4.8242 -2.0127 32 1 -1.4974 -6.2414 -0.1618 33 1 0.0805 -6.1184 0.7850 34 1 -0.1556 -3.5932 0.8516 35 1 -1.7334 -3.7151 -0.0954 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:56 Heat of formation + Delta-G solvation = -22.367350 kcal Electronic energy + Delta-G solvation = -20431.185222 eV Core-core repulsion = 17204.990005 eV Total energy + Delta-G solvation = -3226.195217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.01024 -41.36276 -38.30179 -36.75526 -35.70406 -34.72627 -34.64582 -30.18757 -29.79248 -29.00282 -26.28459 -24.95185 -23.08774 -22.46755 -21.31706 -21.00725 -19.42044 -18.95457 -18.41976 -18.05140 -17.26019 -16.89231 -16.43661 -15.73357 -15.19325 -14.92016 -14.44571 -14.41814 -14.25697 -14.05294 -13.64833 -13.56681 -13.46188 -13.30440 -12.99369 -12.81871 -12.29579 -12.21265 -12.19213 -11.79482 -11.75732 -11.35733 -11.04832 -10.95355 -10.62622 -10.50704 -10.45731 -8.22344 -6.39388 0.15474 0.72030 0.93858 1.43119 1.43947 1.53938 1.61277 2.11973 2.42760 3.01269 3.05830 3.14552 3.23873 3.77443 3.88887 4.10428 4.16162 4.30051 4.38736 4.42371 4.54279 4.54633 4.59825 4.66429 4.73770 4.80213 5.02133 5.04532 5.11622 5.23039 5.36462 5.45859 5.52009 5.78236 6.05096 6.60046 6.85351 7.06093 7.29995 8.84164 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.006211 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.822708 B = 4507.190372 C = 5241.714154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.062 3.938 3 N -0.368 5.368 4 O 0.101 5.899 5 C 0.047 3.953 6 C -0.083 4.083 7 C -0.269 4.269 8 C 0.549 3.451 9 O -0.525 6.525 10 O -0.349 6.349 11 C 0.254 3.746 12 H 0.013 0.987 13 C -0.556 4.556 14 H 0.064 0.936 15 C 0.029 3.971 16 N -0.893 5.893 17 Si 0.973 3.027 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.275 1.275 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.200 4.200 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.268 0.732 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 11.246 1.793 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 N -0.077 5.077 4 O 0.042 5.958 5 C -0.016 4.016 6 C -0.139 4.139 7 C -0.275 4.275 8 C 0.393 3.607 9 O -0.416 6.416 10 O -0.265 6.265 11 C 0.202 3.798 12 H 0.031 0.969 13 C -0.593 4.593 14 H 0.082 0.918 15 C -0.174 4.174 16 N -0.529 5.529 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.237 4.237 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.951 12.157 2.132 12.496 hybrid contribution 0.004 -1.764 -0.469 1.826 sum 1.955 10.393 1.663 10.705 Atomic orbital electron populations 1.20408 0.83291 1.05137 1.05004 1.25109 0.99854 0.85443 0.99598 1.73544 0.89375 1.23142 1.21637 1.84487 1.21189 1.22198 1.67927 1.25166 0.97796 0.83394 0.95287 1.20760 0.87724 0.99018 1.06440 1.21136 0.95134 0.91994 1.19213 1.19840 0.72528 0.85935 0.82431 1.90780 1.48019 1.69129 1.33646 1.86645 1.78204 1.28900 1.32744 1.19993 0.90704 0.71643 0.97505 0.96913 1.21173 1.37256 0.93693 1.07192 0.91781 1.25669 0.94816 0.97293 0.99601 1.70150 1.38808 1.09166 1.34789 0.85287 0.78241 0.78166 0.78614 1.19076 1.20161 1.20060 1.22428 0.94988 1.04992 0.93006 1.22302 1.01180 0.91696 1.00718 1.23286 1.02022 0.96335 1.02010 0.88200 0.87652 0.90160 0.86637 0.85354 0.89790 0.92293 0.90059 0.89138 0.91533 0.89782 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 10.49 71.24 0.75 -1.24 16 2 C 0.06 1.91 7.59 45.17 0.34 2.25 16 3 N -0.37 -10.98 12.01 -44.74 -0.54 -11.52 16 4 O 0.10 2.76 11.06 77.22 0.85 3.62 16 5 C 0.05 1.32 7.55 25.50 0.19 1.51 16 6 C -0.08 -1.64 10.33 71.24 0.74 -0.91 16 7 C -0.27 -9.39 6.37 -18.76 -0.12 -9.51 16 8 C 0.55 23.41 6.96 70.19 0.49 23.90 16 9 O -0.53 -24.73 14.20 19.73 0.28 -24.45 16 10 O -0.35 -16.71 9.85 -56.76 -0.56 -17.27 16 11 C 0.25 13.40 2.25 29.85 0.07 13.46 16 12 H 0.01 0.77 6.92 -2.39 -0.02 0.76 16 13 C -0.56 -30.59 8.88 25.60 0.23 -30.36 16 14 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 15 C 0.03 1.52 5.30 84.65 0.45 1.97 16 16 N -0.89 -48.76 11.43 21.45 0.25 -48.51 16 17 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 21 C -0.14 -6.53 4.47 -10.79 -0.05 -6.58 16 22 C -0.12 -5.49 9.04 30.62 0.28 -5.22 16 23 C -0.20 -8.19 9.80 30.62 0.30 -7.89 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.94 8.11 -2.39 -0.02 1.92 16 30 H 0.27 13.76 8.31 -92.72 -0.77 12.99 16 31 H 0.08 4.03 8.11 -2.39 -0.02 4.01 16 32 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.07 3.29 8.05 -2.39 -0.02 3.27 16 34 H 0.08 3.63 5.37 -2.38 -0.01 3.62 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 Total: -1.00 -64.87 308.12 7.07 -57.80 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.10 Total: 15.20 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 3.66 Total: -18.59 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.29 Total: -60.03 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: 0.57 Total: -38.10 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.87 7.07 -57.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.433 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds