Wall clock time and date at job start Mon Mar 30 2020 00:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30634 * 125.41631 * 2 1 4 4 C 1.33658 * 109.01125 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.28052 * 180.02562 * 4 3 2 6 6 C 1.36445 * 107.43875 * 359.97438 * 4 3 2 7 7 C 1.46538 * 126.64819 * 179.97438 * 6 4 3 8 8 O 1.21607 * 120.00049 * 359.97438 * 7 6 4 9 9 O 1.34888 * 119.99736 * 179.97438 * 7 6 4 10 10 C 1.45196 * 116.99953 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47418 * 330.00148 * 10 9 7 12 12 C 1.50699 * 109.46974 * 210.00369 * 10 9 7 13 13 H 1.08001 * 119.99624 * 274.97239 * 12 10 9 14 14 C 1.37875 * 120.00177 * 94.97681 * 12 10 9 15 15 N 1.31519 * 120.00155 * 184.90561 * 14 12 10 16 16 Si 1.86796 * 119.99939 * 4.90503 * 14 12 10 17 17 H 1.48504 * 109.47293 * 84.83388 * 16 14 12 18 18 H 1.48507 * 109.47131 * 204.83100 * 16 14 12 19 19 H 1.48499 * 109.47169 * 324.83119 * 16 14 12 20 20 C 1.52994 * 109.47131 * 90.00204 * 10 9 7 21 21 C 1.53002 * 117.50124 * 225.91527 * 20 10 9 22 22 C 1.53004 * 117.49954 * 294.57799 * 20 10 9 23 23 O 1.33654 * 125.41252 * 180.28674 * 2 1 3 24 24 H 1.08999 * 109.46872 * 90.00170 * 1 2 3 25 25 H 1.08995 * 109.47231 * 210.00238 * 1 2 3 26 26 H 1.08998 * 109.46671 * 330.00025 * 1 2 3 27 27 H 1.09003 * 109.46712 * 269.99819 * 5 4 3 28 28 H 1.08999 * 109.47365 * 29.99821 * 5 4 3 29 29 H 1.08993 * 109.47282 * 150.00361 * 5 4 3 30 30 H 0.96997 * 120.00454 * 179.97438 * 15 14 12 31 31 H 1.09000 * 115.55370 * 80.24609 * 20 10 9 32 32 H 1.09001 * 117.50010 * 214.99764 * 21 20 10 33 33 H 1.08998 * 117.49581 * 0.02962 * 21 20 10 34 34 H 1.08997 * 117.49892 * 359.97352 * 22 20 10 35 35 H 1.08997 * 117.50052 * 144.99439 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0646 0.0000 4 6 3.5462 0.6871 0.0006 5 6 4.7447 1.6006 0.0013 6 6 3.5708 -0.6771 0.0015 7 6 4.7621 -1.5304 0.0019 8 8 5.8697 -1.0284 0.0008 9 8 4.6301 -2.8728 0.0033 10 6 5.8531 -3.6555 0.0030 11 1 6.6384 -3.1022 -0.5121 12 6 5.6123 -4.9633 -0.7059 13 1 5.1986 -5.8021 -0.1658 14 6 5.9202 -5.0891 -2.0439 15 7 5.6215 -6.1972 -2.6862 16 14 6.7617 -3.6855 -2.9446 17 1 8.2299 -3.7761 -2.7408 18 1 6.4569 -3.7749 -4.3954 19 1 6.2672 -2.3897 -2.4139 20 6 6.2839 -3.9289 1.4453 21 6 7.7579 -3.7142 1.7952 22 6 6.7000 -2.7286 2.2980 23 8 2.2815 -1.0893 -0.0055 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3632 0.8900 0.5138 27 1 5.0342 1.8210 -1.0262 28 1 4.4940 2.5286 0.5151 29 1 5.5729 1.1130 0.5154 30 1 5.8377 -6.2856 -3.6276 31 1 5.7617 -4.7446 1.9454 32 1 8.2052 -4.3886 2.5254 33 1 8.4205 -3.3777 0.9978 34 1 6.6672 -1.7441 1.8313 35 1 6.4515 -2.7545 3.3590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:32 Heat of formation + Delta-G solvation = -44.128908 kcal Electronic energy + Delta-G solvation = -20386.337534 eV Core-core repulsion = 17159.198666 eV Total energy + Delta-G solvation = -3227.138869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.31982 -39.57666 -36.77628 -35.46312 -34.83981 -32.88442 -32.73745 -29.37587 -28.93651 -27.30870 -23.43557 -22.38771 -21.75382 -21.68711 -20.51460 -19.48820 -17.95670 -16.98829 -16.97396 -16.26769 -15.57196 -15.49168 -14.57002 -14.28557 -13.96310 -13.53256 -13.23805 -13.09222 -13.06085 -12.74679 -12.71210 -12.17425 -12.05321 -11.67239 -11.46203 -11.02692 -10.94367 -10.88623 -10.79578 -10.36032 -9.98953 -9.81699 -9.51657 -9.41020 -9.13278 -8.83839 -8.70484 -6.45101 -4.51987 0.91138 2.42460 2.48115 3.12036 3.21691 3.28778 3.31748 3.48659 3.91480 4.16139 4.50947 4.73714 4.90773 5.13823 5.18207 5.19023 5.39701 5.53727 5.62820 5.63534 5.65058 5.72052 5.88809 5.95084 5.99239 6.15320 6.18414 6.35354 6.43012 6.57320 6.71445 6.89302 7.24612 7.42832 7.61792 8.13431 8.53843 8.65852 9.15503 10.64130 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.007068 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.671889 B = 3960.646337 C = 4439.688569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.211 3.789 3 N -0.492 5.492 4 C 0.072 3.928 5 C -0.079 4.079 6 C -0.086 4.086 7 C 0.541 3.459 8 O -0.501 6.501 9 O -0.340 6.340 10 C 0.203 3.797 11 H 0.055 0.945 12 C -0.502 4.502 13 H 0.087 0.913 14 C 0.088 3.912 15 N -0.863 5.863 16 Si 0.871 3.129 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.260 1.260 20 C -0.138 4.138 21 C -0.168 4.168 22 C -0.204 4.204 23 O -0.170 6.170 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.273 0.727 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 11.749 5.573 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.006 3.994 3 N -0.224 5.224 4 C -0.051 4.051 5 C -0.136 4.136 6 C -0.140 4.140 7 C 0.385 3.615 8 O -0.394 6.394 9 O -0.256 6.256 10 C 0.152 3.848 11 H 0.072 0.928 12 C -0.538 4.538 13 H 0.105 0.895 14 C -0.121 4.121 15 N -0.498 5.498 16 Si 0.697 3.303 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.184 1.184 20 C -0.156 4.156 21 C -0.205 4.205 22 C -0.241 4.241 23 O -0.055 6.055 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.391 12.232 5.397 14.416 hybrid contribution 0.647 -0.152 -0.618 0.907 sum -4.744 12.080 4.779 13.830 Atomic orbital electron populations 1.20349 0.80847 1.05408 1.05066 1.26557 0.96810 0.78895 0.97159 1.70304 1.01443 1.30019 1.20616 1.22054 0.93583 0.90992 0.98491 1.20373 0.92271 0.97251 1.03693 1.22382 0.82106 0.93874 1.15657 1.19264 0.84966 0.83882 0.73402 1.90769 1.24590 1.76005 1.48058 1.87260 1.43870 1.14180 1.80292 1.20757 0.82185 0.90168 0.91648 0.92768 1.20912 1.43751 0.93820 0.95311 0.89523 1.25186 0.93991 0.95857 0.97028 1.69891 1.42970 1.26393 1.10556 0.86903 0.80900 0.83304 0.79222 1.19100 1.20585 1.18440 1.22617 0.97205 0.99042 0.96780 1.22800 0.92093 1.02558 1.03042 1.23205 1.05338 0.96351 0.99243 1.84570 1.16054 1.36551 1.68364 0.88476 0.88812 0.87909 0.90088 0.90545 0.88600 0.91672 0.87881 0.89255 0.89146 0.87969 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.21 3.09 8.32 -12.79 -0.11 2.98 16 3 N -0.49 -7.91 11.25 -7.05 -0.08 -7.99 16 4 C 0.07 1.25 7.16 -82.45 -0.59 0.66 16 5 C -0.08 -1.12 9.87 36.00 0.36 -0.77 16 6 C -0.09 -1.70 7.25 -36.88 -0.27 -1.97 16 7 C 0.54 12.07 7.39 34.08 0.25 12.32 16 8 O -0.50 -11.17 11.78 -19.35 -0.23 -11.39 16 9 O -0.34 -8.42 9.88 -41.99 -0.41 -8.84 16 10 C 0.20 5.04 1.87 -27.89 -0.05 4.99 16 11 H 0.05 1.39 4.12 -51.93 -0.21 1.17 16 12 C -0.50 -14.02 9.24 -34.44 -0.32 -14.34 16 13 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 14 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 15 N -0.86 -25.13 13.96 55.43 0.77 -24.35 16 16 Si 0.87 21.52 26.99 -169.99 -4.59 16.93 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.26 -6.58 6.82 56.52 0.39 -6.19 16 20 C -0.14 -2.95 5.33 -90.62 -0.48 -3.43 16 21 C -0.17 -3.10 10.18 -26.69 -0.27 -3.37 16 22 C -0.20 -3.79 9.83 -26.69 -0.26 -4.06 16 23 O -0.17 -3.12 10.79 4.37 0.05 -3.07 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.44 6.47 -51.93 -0.34 1.10 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.10 2.16 8.14 -51.93 -0.42 1.74 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.69 8.08 -51.93 -0.42 1.27 16 34 H 0.10 2.01 5.57 -51.93 -0.29 1.72 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -31.75 303.86 -5.59 -37.34 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.21 Total: 1.53 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.46 Total: -4.74 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.69 Total: -32.34 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.60 Total: -23.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.59 Total: 16.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.75 -5.59 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.785 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds