Wall clock time and date at job start Mon Mar 30 2020 00:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48500 * 109.46990 * 270.00278 * 3 2 1 5 5 H 1.48504 * 109.46779 * 30.00128 * 3 2 1 6 6 H 1.48498 * 109.47260 * 150.00120 * 3 2 1 7 7 C 1.37884 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99663 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99998 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47277 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99701 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99785 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99498 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46921 * 179.97438 * 14 13 11 16 16 C 1.35449 * 126.77663 * 89.98074 * 15 14 13 17 17 C 1.41387 * 103.98917 * 180.02562 * 16 15 14 18 18 C 1.50694 * 126.80435 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49958 * 343.74850 * 18 17 16 20 20 C 1.52995 * 117.50195 * 275.08673 * 18 17 16 21 21 N 1.30173 * 106.39214 * 0.02562 * 17 16 15 22 22 O 1.20923 * 111.60616 * 359.97438 * 21 17 16 23 23 H 0.96999 * 120.00547 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47329 * 60.00056 * 9 7 2 25 25 H 1.08994 * 109.47336 * 299.99602 * 9 7 2 26 26 H 1.09005 * 109.46821 * 59.99954 * 10 9 7 27 27 H 1.08994 * 109.47401 * 300.00133 * 10 9 7 28 28 H 1.08998 * 109.47223 * 59.99949 * 14 13 11 29 29 H 1.08996 * 109.46859 * 299.99747 * 14 13 11 30 30 H 1.08004 * 128.00729 * 0.07331 * 16 15 14 31 31 H 1.09005 * 115.55017 * 129.41236 * 18 17 16 32 32 H 1.08998 * 117.49821 * 359.97438 * 19 18 17 33 33 H 1.09000 * 117.50048 * 145.02131 * 19 18 17 34 34 H 1.08998 * 117.50084 * 214.97900 * 20 18 17 35 35 H 1.09006 * 117.49384 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5287 -2.6364 -0.0022 12 8 6.1327 -1.5900 -0.0036 13 8 6.1998 -3.7989 -0.0028 14 6 7.6498 -3.7228 -0.0034 15 6 8.2259 -5.1153 -0.0035 16 6 8.5351 -5.8649 -1.0884 17 6 9.0332 -7.0695 -0.5408 18 6 9.5287 -8.2710 -1.3036 19 6 9.1573 -8.3701 -2.7845 20 6 8.4884 -9.2940 -1.7637 21 7 8.9779 -6.9355 0.7528 22 8 8.5326 -5.8570 1.0701 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8745 -0.6800 -0.8911 26 1 3.6579 -3.1505 -0.8908 27 1 3.6587 -3.1501 0.8892 28 1 7.9861 -3.1909 0.8865 29 1 7.9853 -3.1904 -0.8934 30 1 8.4270 -5.6028 -2.1306 31 1 10.5067 -8.6477 -1.0037 32 1 8.5542 -7.5664 -3.2069 33 1 9.8906 -8.8124 -3.4588 34 1 8.7819 -10.3438 -1.7669 35 1 7.4455 -9.0982 -1.5143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327125531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:57 Heat of formation + Delta-G solvation = -6.370924 kcal Electronic energy + Delta-G solvation = -18785.981831 eV Core-core repulsion = 15560.480271 eV Total energy + Delta-G solvation = -3225.501560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.21899 -40.23907 -37.94356 -36.60263 -33.72981 -33.65455 -32.76813 -31.44988 -27.87545 -26.09023 -24.97163 -23.17946 -22.40299 -21.98572 -20.15802 -19.93647 -18.00512 -17.73116 -17.47831 -16.68352 -16.45507 -16.25683 -15.46454 -14.89315 -14.35077 -14.23716 -14.06941 -13.36778 -12.86247 -12.63765 -12.50648 -12.34109 -11.98355 -11.89554 -11.51043 -11.47571 -11.06690 -10.89642 -10.66679 -10.41427 -10.27169 -10.15502 -10.03981 -9.84563 -9.62568 -9.29869 -8.58867 -6.10125 -4.10515 0.98471 1.82483 2.53188 2.57678 3.18796 3.25341 3.31858 3.39252 3.47499 3.70728 4.13486 4.39026 4.43253 4.51773 4.65283 4.69673 4.90131 4.90999 5.11770 5.19270 5.24431 5.32225 5.36551 5.42366 5.61227 5.67296 5.69351 5.92630 5.94322 6.34364 6.62413 7.18116 7.25745 7.66432 7.96075 8.03857 8.43054 8.92021 9.51230 11.02411 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.038260 B = 0.003114 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.651016 B = 8989.750844 C = 9299.503183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.462 3.538 12 O -0.507 6.507 13 O -0.358 6.358 14 C 0.145 3.855 15 C -0.029 4.029 16 C -0.200 4.200 17 C 0.045 3.955 18 C -0.089 4.089 19 C -0.163 4.163 20 C -0.162 4.162 21 N -0.352 5.352 22 O 0.112 5.888 23 H 0.265 0.735 24 H 0.027 0.973 25 H 0.022 0.978 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.175 0.825 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.645 -15.109 -4.313 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.132 4.132 11 C 0.306 3.694 12 O -0.393 6.393 13 O -0.277 6.277 14 C 0.070 3.930 15 C -0.093 4.093 16 C -0.222 4.222 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.200 4.200 20 C -0.200 4.200 21 N -0.054 5.054 22 O 0.042 5.958 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.193 0.807 31 H 0.141 0.859 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.030 -15.463 -3.270 25.514 hybrid contribution 0.374 1.275 -0.744 1.523 sum 20.404 -14.188 -4.014 25.174 Atomic orbital electron populations 1.69898 1.06294 1.27131 1.50468 1.24959 0.94727 0.99222 0.94191 0.86799 0.80583 0.83401 0.78779 1.20154 1.21302 1.18567 1.21016 0.88781 0.94832 1.52002 0.90626 1.19497 0.96988 0.89463 0.98013 1.21595 0.82802 1.03705 1.05098 1.24847 0.92689 0.80537 0.71302 1.90642 1.70464 1.32876 1.45337 1.86643 1.19143 1.36873 1.84999 1.20973 0.79150 0.87628 1.05285 1.23911 1.02549 0.96416 0.86384 1.22443 1.05298 0.93297 1.01120 1.22648 1.02209 0.96769 0.89735 1.20102 1.00229 0.94399 0.96007 1.23060 1.03551 1.02806 0.90578 1.23055 0.98190 0.96260 1.02523 1.73841 1.15713 0.99662 1.16149 1.84870 1.58872 1.19090 1.32933 0.92550 0.95505 0.95973 0.88139 0.88051 0.88705 0.87631 0.80735 0.85893 0.88066 0.87710 0.87816 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.53 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 -0.05 3.33 -27.89 -0.09 -0.14 16 10 C -0.09 -1.76 5.75 -27.88 -0.16 -1.92 16 11 C 0.46 8.01 7.96 36.01 0.29 8.30 16 12 O -0.51 -9.98 15.73 -18.75 -0.29 -10.28 16 13 O -0.36 -5.26 10.20 -39.25 -0.40 -5.66 16 14 C 0.14 1.67 6.03 36.00 0.22 1.89 16 15 C -0.03 -0.33 7.13 -35.31 -0.25 -0.59 16 16 C -0.20 -2.03 10.40 -39.38 -0.41 -2.44 16 17 C 0.04 0.49 6.95 -82.10 -0.57 -0.08 16 18 C -0.09 -0.72 6.33 -91.78 -0.58 -1.30 16 19 C -0.16 -0.99 10.05 -26.69 -0.27 -1.26 16 20 C -0.16 -1.14 10.24 -26.70 -0.27 -1.41 16 21 N -0.35 -4.61 12.07 33.42 0.40 -4.21 16 22 O 0.11 1.45 11.20 17.17 0.19 1.64 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 25 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 26 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 27 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 28 H 0.09 1.03 8.13 -51.93 -0.42 0.61 16 29 H 0.11 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.18 1.32 7.63 -52.48 -0.40 0.92 16 31 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.60 7.34 -51.93 -0.38 0.22 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -32.39 311.75 -6.34 -38.73 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -4.51 Total: -3.54 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.53 Total: -11.96 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 1.18 Total: -30.71 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.50 Total: -14.30 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.39 -6.34 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327125531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.357 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds