Wall clock time and date at job start Mon Mar 30 2020 00:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35451 * 126.77704 * 2 1 4 4 C 1.41379 * 103.98536 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.80531 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47092 * 124.99994 * 5 4 3 7 7 O 1.20829 * 120.00077 * 0.02562 * 6 5 4 8 8 O 1.34224 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.45207 * 117.00145 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47305 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.54913 * 294.89081 * 10 9 8 12 12 H 1.07995 * 120.00397 * 95.16717 * 11 10 9 13 13 C 1.37878 * 119.99626 * 274.88524 * 11 10 9 14 14 N 1.31520 * 120.00038 * 6.39360 * 13 11 10 15 15 Si 1.86796 * 120.00205 * 186.39563 * 13 11 10 16 16 H 1.48504 * 109.47020 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47190 * 119.99838 * 15 13 11 18 18 H 1.48496 * 109.47249 * 239.99932 * 15 13 11 19 19 C 1.53006 * 117.49693 * 80.55213 * 10 9 8 20 20 C 1.52997 * 117.49830 * 149.21413 * 10 9 8 21 21 N 1.30180 * 106.39747 * 0.26454 * 4 3 2 22 22 O 1.20927 * 111.59774 * 359.53682 * 21 4 3 23 23 H 1.08997 * 109.47015 * 89.99242 * 1 2 3 24 24 H 1.08994 * 109.47204 * 209.99692 * 1 2 3 25 25 H 1.08998 * 109.47078 * 329.99733 * 1 2 3 26 26 H 1.08001 * 128.00832 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.46633 * 5.00403 * 5 4 3 28 28 H 1.08995 * 109.47240 * 245.00245 * 5 4 3 29 29 H 1.09000 * 109.47008 * 60.00041 * 9 8 6 30 30 H 1.08998 * 109.46903 * 299.99954 * 9 8 6 31 31 H 0.96995 * 120.00267 * 180.02562 * 14 13 11 32 32 H 1.08998 * 117.49874 * 215.00127 * 19 10 9 33 33 H 1.08995 * 117.49819 * 0.02968 * 19 10 9 34 34 H 1.08998 * 117.50062 * 359.97438 * 20 10 9 35 35 H 1.09000 * 117.49878 * 144.97626 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9212 1.2999 -0.0003 6 6 5.7670 0.8505 1.1631 7 8 5.3568 -0.0021 1.9146 8 8 6.9762 1.3972 1.3644 9 6 7.7360 0.9155 2.5042 10 6 9.0771 1.6492 2.5701 11 6 10.0176 1.3886 1.4218 12 1 10.0418 2.0642 0.5796 13 6 10.8513 0.2908 1.4491 14 7 10.7390 -0.5964 2.4135 15 14 12.1403 0.0635 0.1164 16 1 12.0617 1.1919 -0.8458 17 1 13.4905 0.0321 0.7339 18 1 11.8931 -1.2142 -0.5986 19 6 9.0869 3.0490 3.1876 20 6 9.6941 1.8703 3.9526 21 7 3.4764 -0.7564 -0.0067 22 8 2.3095 -1.0736 -0.0007 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 2.0346 2.1271 -0.0004 27 1 4.7164 2.3667 0.0901 28 1 5.4541 1.1099 -0.9319 29 1 7.9127 -0.1547 2.3970 30 1 7.1745 1.1012 3.4198 31 1 11.3258 -1.3685 2.4329 32 1 9.7736 3.7814 2.7634 33 1 8.1381 3.4471 3.5473 34 1 9.1445 1.4935 4.8152 35 1 10.7804 1.8269 4.0316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330212740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:14 Heat of formation + Delta-G solvation = -5.245550 kcal Electronic energy + Delta-G solvation = -19469.712698 eV Core-core repulsion = 16244.259938 eV Total energy + Delta-G solvation = -3225.452760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.94148 -39.74978 -36.86306 -35.35171 -34.59827 -33.47876 -31.96147 -29.82711 -27.92830 -26.69105 -25.22693 -23.18676 -21.66366 -21.10705 -19.50842 -19.23514 -17.75990 -17.32244 -16.79259 -16.42821 -15.79472 -15.32063 -14.61065 -14.55577 -13.99016 -13.85193 -13.49371 -13.21674 -13.09942 -12.81566 -12.47918 -12.08281 -11.86662 -11.59997 -11.09728 -11.00055 -10.85298 -10.52202 -10.30014 -10.22974 -9.96006 -9.84270 -9.54459 -9.35672 -8.82378 -8.47547 -8.21754 -6.06898 -4.12348 1.45780 2.13803 2.74848 3.06260 3.28046 3.36411 3.37389 3.40638 4.07975 4.38116 4.39989 4.88450 5.00750 5.08635 5.11805 5.17898 5.23294 5.38217 5.39902 5.46436 5.60501 5.73877 5.96904 5.98338 6.23819 6.33046 6.52908 6.65034 6.72056 7.02144 7.25790 7.35598 7.46494 7.86589 8.31559 8.34898 8.44146 8.89637 9.53732 11.02593 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.004186 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.846180 B = 6687.607505 C = 7150.006696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.226 4.226 4 C 0.024 3.976 5 C -0.036 4.036 6 C 0.454 3.546 7 O -0.510 6.510 8 O -0.336 6.336 9 C 0.117 3.883 10 C 0.038 3.962 11 C -0.490 4.490 12 H 0.064 0.936 13 C 0.068 3.932 14 N -0.881 5.881 15 Si 0.893 3.107 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.205 4.205 20 C -0.146 4.146 21 N -0.334 5.334 22 O 0.106 5.894 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.172 0.828 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.891 4.757 -4.862 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.247 4.247 4 C -0.135 4.135 5 C -0.074 4.074 6 C 0.295 3.705 7 O -0.399 6.399 8 O -0.252 6.252 9 C 0.044 3.956 10 C 0.037 3.963 11 C -0.528 4.528 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.517 5.517 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.242 4.242 20 C -0.183 4.183 21 N -0.034 5.034 22 O 0.036 5.964 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.190 0.810 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.000 3.300 -4.546 17.904 hybrid contribution 0.456 0.436 -0.437 0.767 sum -16.544 3.735 -4.982 17.677 Atomic orbital electron populations 1.20298 0.84140 1.04568 1.03894 1.24479 0.96393 0.86364 1.03354 1.22331 0.90922 1.01001 1.10459 1.22850 0.96076 0.90175 1.04428 1.19558 0.89002 1.00674 0.98180 1.23100 0.81785 0.79952 0.85618 1.90661 1.72568 1.30343 1.46349 1.86495 1.27313 1.61412 1.49959 1.22913 0.89963 1.00146 0.82591 1.18784 0.91295 0.92107 0.94103 1.20425 1.19075 1.09774 1.03517 0.91773 1.25028 0.97201 0.95465 0.95814 1.70007 1.38070 1.11208 1.32446 0.86524 0.81436 0.78149 0.81883 1.19556 1.20905 1.21005 1.23008 1.00772 0.93124 1.07317 1.22547 0.99860 1.01165 0.94750 1.73943 0.96256 1.16234 1.16994 1.84870 1.11355 1.33188 1.67006 0.89543 0.89887 0.89197 0.81036 0.85726 0.85862 0.90549 0.94372 0.92931 0.90023 0.91558 0.91654 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.45 36.01 0.38 -0.02 16 2 C -0.04 -0.45 7.49 -35.30 -0.26 -0.71 16 3 C -0.23 -2.50 11.05 -39.38 -0.44 -2.94 16 4 C 0.02 0.35 6.10 -82.10 -0.50 -0.15 16 5 C -0.04 -0.51 6.41 -29.04 -0.19 -0.70 16 6 C 0.45 9.06 7.95 36.00 0.29 9.34 16 7 O -0.51 -11.80 15.35 -18.75 -0.29 -12.09 16 8 O -0.34 -7.49 10.16 -39.24 -0.40 -7.89 16 9 C 0.12 2.86 5.29 37.16 0.20 3.05 16 10 C 0.04 0.95 1.61 -155.66 -0.25 0.70 16 11 C -0.49 -13.49 8.77 -34.44 -0.30 -13.80 16 12 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 13 C 0.07 1.88 5.39 -17.82 -0.10 1.79 16 14 N -0.88 -25.25 12.93 55.43 0.72 -24.54 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C -0.20 -4.48 9.96 -26.69 -0.27 -4.74 16 20 C -0.15 -3.42 9.43 -26.69 -0.25 -3.67 16 21 N -0.33 -5.75 11.48 33.42 0.38 -5.37 16 22 O 0.11 1.53 11.20 17.19 0.19 1.72 16 23 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.08 2.09 8.13 -51.93 -0.42 1.66 16 30 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 32 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -33.67 315.54 -5.97 -39.64 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.61 Total: -0.65 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.69 Total: -11.85 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 1.10 Total: -29.91 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.49 Total: -18.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.67 -5.97 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330212740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.394 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds