Wall clock time and date at job start Sun Mar 29 2020 23:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47075 * 179.97438 * 19 17 16 21 21 O 1.42902 * 109.47319 * 180.02562 * 20 19 17 22 22 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 23 23 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 24 24 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 25 25 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 26 26 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 27 27 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 28 28 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 29 29 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 30 30 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 31 31 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 32 32 H 1.09001 * 109.47096 * 299.99644 * 20 19 17 33 33 H 1.09000 * 109.47823 * 59.99924 * 20 19 17 34 34 H 0.96701 * 114.00252 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5954 -0.0095 19 6 0.4297 -9.5670 -2.3664 20 6 -0.2672 -10.9224 -2.2324 21 8 -0.4909 -11.4736 -3.5317 22 6 1.4365 -4.7345 0.2253 23 1 -0.4849 0.8401 -0.0004 24 1 3.9527 -2.4857 -0.0140 25 1 5.2811 -4.5471 0.1902 26 1 4.1533 -6.7247 0.4045 27 1 2.1300 -7.9004 1.0433 28 1 0.5456 -7.0924 0.9734 29 1 1.5547 -7.3009 -1.6561 30 1 -0.1994 -8.8900 -2.9444 31 1 1.3848 -9.6986 -2.8749 32 1 0.3624 -11.5991 -1.6546 33 1 -1.2222 -10.7913 -1.7236 34 1 -0.9300 -12.3351 -3.5233 35 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337807588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:59 Heat of formation + Delta-G solvation = -123.779163 kcal Electronic energy + Delta-G solvation = -18805.526317 eV Core-core repulsion = 15574.933554 eV Total energy + Delta-G solvation = -3230.592763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10018 -40.57236 -38.52107 -37.70234 -35.79130 -34.29260 -32.83586 -31.73697 -30.72222 -27.66032 -26.93261 -24.33064 -23.26276 -22.40883 -21.38623 -19.64923 -19.03432 -18.65909 -17.35316 -17.10854 -16.94620 -16.69524 -16.40370 -16.07575 -15.51637 -15.49606 -14.97148 -14.72647 -14.49638 -14.32322 -13.93756 -13.74164 -13.41053 -13.03114 -12.82519 -12.54943 -12.39599 -12.28192 -12.23807 -12.11856 -11.23083 -11.09969 -10.94972 -10.81015 -10.15186 -9.76563 -9.04190 -8.47589 -6.16223 0.37401 0.69877 1.35708 1.44436 1.53011 1.56814 2.14814 2.17488 2.83646 3.14026 3.38871 3.46554 3.76299 3.83593 4.06892 4.09637 4.29457 4.31560 4.40693 4.52137 4.56770 4.70405 4.73941 4.86284 4.87566 5.00979 5.11262 5.24944 5.34041 5.61605 5.69847 5.71000 6.01073 6.15906 6.48267 6.85325 6.97286 7.15896 7.77387 8.75528 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.003340 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.074465 B = 8381.758251 C = 8857.841743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.235 4.235 12 C -0.069 4.069 13 C -0.168 4.168 14 C -0.059 4.059 15 C 0.173 3.827 16 N -0.713 5.713 17 C 0.518 3.482 18 O -0.585 6.585 19 C -0.137 4.137 20 C 0.094 3.906 21 O -0.589 6.589 22 C -0.183 4.183 23 H 0.272 0.728 24 H 0.121 0.879 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.414 0.586 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.402 0.598 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -16.648 -4.376 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.254 4.254 12 C -0.087 4.087 13 C -0.187 4.187 14 C -0.060 4.060 15 C 0.049 3.951 16 N -0.365 5.365 17 C 0.306 3.694 18 O -0.465 6.465 19 C -0.177 4.177 20 C 0.015 3.985 21 O -0.398 6.398 22 C -0.202 4.202 23 H 0.081 0.919 24 H 0.138 0.862 25 H 0.167 0.833 26 H 0.167 0.833 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.250 0.750 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.252 0.748 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.588 -16.357 -3.866 17.712 hybrid contribution -0.255 0.891 -0.001 0.927 sum 5.332 -15.466 -3.867 16.810 Atomic orbital electron populations 1.70188 1.08066 1.28793 1.48877 1.26588 0.96819 1.02774 0.95881 0.84590 0.77825 0.74579 0.79262 1.18760 1.19818 1.17560 1.21826 0.92554 0.81351 1.53163 0.87895 1.83946 1.35971 1.12584 1.81427 1.19860 0.91657 0.87834 0.94443 1.21389 0.93004 1.00475 1.10543 1.21170 1.00457 0.91133 0.95973 1.21004 0.93035 0.98288 1.06383 1.19454 0.93995 0.92560 0.99982 1.20050 0.99728 0.90366 0.84909 1.46032 1.60505 1.20328 1.09643 1.20857 0.76248 0.80610 0.91704 1.90693 1.52725 1.61428 1.41685 1.21474 1.05030 0.97740 0.93422 1.21697 0.99175 0.93543 0.84035 1.86349 1.83503 1.41241 1.28710 1.20229 0.99425 0.90208 1.10375 0.91871 0.86170 0.83314 0.83319 0.89351 0.91891 0.74958 0.87007 0.86164 0.92853 0.93474 0.74756 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.03 13.67 21.61 0.30 -55.73 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 3 Si 1.02 42.04 29.55 68.60 2.03 44.06 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.41 -23.49 9.49 67.92 0.64 -22.84 16 8 H 0.10 5.32 5.21 -2.91 -0.02 5.30 16 9 O -0.23 -13.67 9.76 -22.74 -0.22 -13.89 16 10 C 0.11 5.34 6.65 22.58 0.15 5.49 16 11 C -0.23 -9.54 9.17 22.39 0.21 -9.34 16 12 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 13 C -0.17 -4.63 9.70 22.30 0.22 -4.42 16 14 C -0.06 -1.83 5.25 -19.88 -0.10 -1.93 16 15 C 0.17 4.54 5.80 85.63 0.50 5.03 16 16 N -0.71 -16.15 5.55 -466.79 -2.59 -18.74 16 17 C 0.52 12.18 7.83 87.66 0.69 12.86 16 18 O -0.58 -18.06 15.98 -3.03 -0.05 -18.10 16 19 C -0.14 -2.35 6.07 29.85 0.18 -2.17 16 20 C 0.09 1.64 6.34 71.98 0.46 2.10 16 21 O -0.59 -9.39 13.66 -148.98 -2.04 -11.42 16 22 C -0.18 -7.37 9.65 22.39 0.22 -7.15 16 23 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 25 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 26 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 27 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 28 H 0.06 1.83 8.08 -2.39 -0.02 1.81 16 29 H 0.41 8.02 8.46 -92.71 -0.78 7.23 16 30 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.40 2.75 9.12 -74.06 -0.68 2.07 16 35 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -74.67 310.51 0.94 -73.73 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.33 Total: 25.19 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.84 Total: -25.10 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.29 Total: -74.47 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.31 Total: -43.42 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -74.67 0.94 -73.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337807588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.050 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds